CmoCh13G003100 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G003100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr13 : 3338036 .. 3342265 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGTACTCAATGTTCAAATCAAGGGAGAGAAATTTGAATATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGATCAAAGCAAACCCATGCAGCTTGCTGATTGATGATAGTGGAAGTTGCACGAATGTGGTAAGCAGTTTCCTTGTAAAAAGACTTCAACTTTCTGTCTATCCACATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAATTCCCAAGCTCTTATTTCTTTTACTCTTGGAAGATATAAAGATGAAGTTCTTTATGATGTCGTACCAATGCATGCGGGGGACATCTTTATCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTCATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAAAAAAGAACAGAATCTGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAGGGGAGAAAAAAAAGTGAGAAAAAAAAAATTCAGTTCTTGTCCGGAAAGAACGATGAATTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGGGGATGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGTCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTAAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGAGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGCTTATCATATGTCCTAGAATCGAGACGTGAGCAAAACTCAGAAGAAGTGTGGGTGAACACGGCCAGCCAGGGAGGAAAGAAAAGGGAGGGGGGAAAGCCTTAGCCCTGAGAATCAAACGTGGCGCTGCTGGATGCTTCTAATCAATAATTGGTGAAGAGGTCCGTGGGTTCCCTTTCTTTATTGGTTGGAACTATCTTTCTATTTCTTTTTCTTTTGAATCGAATTGGTCAGGGGCTCTTTCTTTTACCTTGGAAAATCAATCATACAGTTACCTCACAGAGAGTTAGCTGCAACCACAAATGAGATAAATACTACTCTTGCTTTAGCTTTACTCACATCAGTAGCATATTTCTATGCCGGTCTTAGCTAAAAAGGATTATGAAGGTCTTTCGGGAAATACATTCAACCAACTACAATCCTTTTACCACCCATTAGCACATCTTAGAAGATTGAACAAAACCCCCTTATCACTTTGTTTTCTATCTACTTGTTGGAAATATATTAGCTGATGAATTAGTAGTAGTTGTTCTTGTTTCTTTAGTACATTTAGTAGTTCCTATACCAGTATAGGTCCTTAAATACAAGTGGTATTCAAGCTCTGATTTTAGCAACTTTAGCTGCGGCTTATATAGGCGAATCCATGGAGGGGCATCATTGATTAGTTTTCGAAATAGTCTTTTGGTTTTATCTTAGACCAAGGCAATGTATACATGGCTCAAGATAATCTAGGGAACATAAATATACAAAGAATTTTCAAATACAGAAGAGATATATACTATCTAGGGAATCAGAGTAATAGTAAACCAAAGATTGCGCTATTCCTATTCTTCAGGAATTGTCTGTCAAAAAAGGAAAGAGATCTCAACACTTTTTCCTCTCAACGATTGAACAAAAGAAAAAAAAAAGCAGAAATTACACTTAGCTTAGATTAAGAAAATCTTGATATTTCTAGGCTATGCAAGGATTCGGACTAAACTAATTCATTTGTCCATTTAGATTGATTGTCTACATGTGGGTGGGATAATTCTAAAGAAAAAGGGGGACAAAGAGAAAAAAGGATTGGTTAGGGTAGAGTGGAGTCTACTAGATGTATTGAATCGAATTGCTATAAGACAACCCTTGCCTATGGATGTTTCGAAGAATGATTACAGAACTAGAATTGGAATCCATGAATAATGAATTGGTTTACGTTAGGGAAGAAAGACATGTATATGCTCTACTATATTAGATAGAGACTAGTTATATAGGAACTCAAGATATATCTAATCCCCGCCCGCCCTACTACTGTGAGTTTAGATAGGGCTTGCAATGGGAGTCCTTCCGTTTCCTTCCTCTGTCAGATTCAATCAAGAACAAAGAATGAAGCTTTAGAAAAAAGAAAGAGCAGAACAGCAGAACAAGAGTTGTATGGATTCACAAAAACTACGGGGGTGGATAGGAAAAAGAGAGATTGAAATAGTTTGGACAATTCAATATCCATAAGATTCTAACTTACTTCTTTTTATCAGGATAAATCTTAGCGATGGAATAATCAGTGATATGAGAATGAATTGGTTGATCGTCTGTCTCATTAATCATTTCTTTCTTTTGGTGTTAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA

mRNA sequence

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA

Coding sequence (CDS)

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-06
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLISSASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISSASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_NICTO (ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_MANES (ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_NICSY (ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. TrEMBL
Match: A0A087FXQ7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs49867U000100 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 119/292 (40.75%), Postives = 178/292 (60.96%), Query Frame = 1

Query: 75  QPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAE 134
           +P R      D  GG+K++IPPF GT + EAYL WE KIE VF C   +E+ K+R+A  E
Sbjct: 68  RPERDRAPLRDTLGGLKIQIPPFHGTNNLEAYLDWETKIELVFICRECTEDTKVRIAATE 127

Query: 135 FTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKS 194
           F N+A  W+  L + RRR  + PIETW ++K VMRKR+ P +Y+R L  +L+ L QG+ S
Sbjct: 128 FYNYALSWWDQLVTTRRRAGDYPIETWNQMKAVMRKRFVPSYYQRELHQRLRDLVQGSSS 187

Query: 195 VAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIED 254
           + +Y+++MET+M RA +REE E  MSRF+GGLNR+I  L++      +E++ H A+  E 
Sbjct: 188 MEDYFKDMETLMLRADIREEGETLMSRFMGGLNRDIQDLLETQHYVEIEELLHKAVMFEQ 247

Query: 255 QLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNE 314
           Q+K  K  S  Y S    FS   ++ K+  ++      P   F   K  E +      NE
Sbjct: 248 QIKRRKAKSS-YGSTKMGFSGKPSYAKEEKLSFPRDSKP---FAKPKNEEHDP-----NE 307

Query: 315 ASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDS 366
            +K    ++  I+C+KC+G GH + EC N++VM+++ NG L+S+DE  +HD+
Sbjct: 308 KAKG-GSRARDIRCFKCQGRGHYANECSNKRVMILQDNGELESEDEQPEHDA 349

BLAST of CmoCh13G003100 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 124/341 (36.36%), Postives = 202/341 (59.24%), Query Frame = 1

Query: 38  AQQQRQERTLQEDEGIVVQERQVDGRWRGRNNH---ATIMQPRRMERVHEDRDGGVKLKI 97
           A +   ER L+E +G  +Q+R  +   R +N++       + RR  R   D   G+K+K+
Sbjct: 18  AMRDNFERLLRE-QGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQGGDNLRGIKIKV 77

Query: 98  PPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKE 157
           P F G +D EAYL+WE K+E +F+C+ YS  +K+++A  EF  +A  W+  L  +RRR  
Sbjct: 78  PTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRRYA 137

Query: 158 ENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRAKVREE 217
           E PI+TWEE+K +MR+R+ P +Y R L  KLQ L QG+KSV EY++EME +  RA V E+
Sbjct: 138 ERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEED 197

Query: 218 EEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFS 277
           +E TM+RFL GLN +I+ +V+ +    ++++ H A+K+E QLK  K  ++R         
Sbjct: 198 DEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR--------- 257

Query: 278 NSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGF 337
           NS T+N  S+ +K    + K    ++K    E+  GK   +S +    + S++C+KC+G 
Sbjct: 258 NSTTFNSQSWKDK----TKKEGASSSKEATVEN-KGKTITSSSSSVSTNKSVKCFKCQGQ 317

Query: 338 GHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYD 376
           GH++ +C  ++ M++       ++E  D+D +  EEI + D
Sbjct: 318 GHIASQCPTKRTMLMEENEEIVEEEDGDYDKEFGEEIPSGD 342

BLAST of CmoCh13G003100 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.1e-48
Identity = 125/343 (36.44%), Postives = 205/343 (59.77%), Query Frame = 1

Query: 38  AQQQRQERTLQEDEGIVVQERQVDGRWRGRNNH---ATIMQPRRMERVHEDRDGGVKLKI 97
           A +   ER L+E +G  +Q+R  +   R +N++       + RR  R   D   G+K+K+
Sbjct: 18  AMRDNFERLLRE-QGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQRGDNLRGIKIKV 77

Query: 98  PPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKE 157
           P F G +D EAYL+WE K+E +F+C+ YS  +K+++A  EF  +A  W+  L  +RRR  
Sbjct: 78  PTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRRYA 137

Query: 158 ENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRAKVREE 217
           E PI+TWEE+K +MR+R+ P +Y R L  KL+ L QG+KSV EY++EME +  RA V E+
Sbjct: 138 ERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEED 197

Query: 218 EEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFS 277
           +E TM+RFL GLN +I+ +V+ +    ++++ H A+K+E QLK  K  ++R         
Sbjct: 198 DEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR--------- 257

Query: 278 NSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGF 337
           NS T+N  S+ +K    + K    ++K    E+  GK   +S +    + S++C+KC+G 
Sbjct: 258 NSTTFNSQSWKDK----TKKEGASSSKEATVEN-KGKTITSSSSSVSTNKSVKCFKCQGQ 317

Query: 338 GHMSKECVNEKVMVI--RNGILDSDDECEDHDSQLVEEIAAYD 376
           GH++ +C  ++ M++    GI++ +D   D+D +  EEI + D
Sbjct: 318 GHIASQCPTKRTMLMEENEGIVEEED--GDYDEEFEEEIPSGD 342

BLAST of CmoCh13G003100 vs. TrEMBL
Match: A0A151RW41_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 134/375 (35.73%), Postives = 209/375 (55.73%), Query Frame = 1

Query: 25  MMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHE 84
           M +++ E+ +E   + +R E     +E     ER      RGRN  A    PR      +
Sbjct: 22  MQRLLRENNEELYGRIERLENYEHHEE-----ER------RGRNGGA----PR------Q 81

Query: 85  DRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQ 144
           +R  GVKL +PPF G +D EAY++WE KIEH+F CN Y E +K++LA AEF+++A  W+ 
Sbjct: 82  NRIEGVKLNVPPFKGKSDPEAYVEWELKIEHIFTCNNYDEEQKVKLAAAEFSDYALVWWN 141

Query: 145 HLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMET 204
            LK ER R EE  +ETW E+K +MRKRY P  Y R++K KLQ L QGTK V EY++E++ 
Sbjct: 142 KLKRERLRNEEPLVETWAEMKRLMRKRYVPASYVRDVKFKLQKLSQGTKRVEEYFKELDL 201

Query: 205 MMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSK 264
           +M +A + E+ E TM+RF+ GLN +I  +V+      +ED+ H ++++E QLK +    K
Sbjct: 202 LMMQANIEEDPELTMARFINGLNNDICDVVELQEFVEIEDLLHKSIQVEQQLKRKSVTKK 261

Query: 265 RYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSS 324
                     +S+ +N  S+ +KN     K   VT     + S     ++  +  ++KS 
Sbjct: 262 ----------SSSNYNSFSWKDKN----KKEVAVTLSNPASTSHGKSSSKTLEQPQKKSK 321

Query: 325 SIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQLVEEIAAYDDEYVEEGN 384
            I+C+KC+G GH + EC  ++ MV++ NG   S  +  + +   +EE     +E   EG+
Sbjct: 322 DIKCFKCQGMGHYAYECPTKRTMVLKENGDYTSQSDVSEEEEGDIEE-----EEEALEGD 356

Query: 385 SISLITRKELIMNPL 399
            + +       M+PL
Sbjct: 382 LLMIRRMMGSQMSPL 356

BLAST of CmoCh13G003100 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.9e-46
Identity = 136/386 (35.23%), Postives = 205/386 (53.11%), Query Frame = 1

Query: 15  NTTILQAIQGMMKMMMEDRQERRAQQQ-----RQERTLQEDEGIVVQERQVD--GRWRGR 74
           N  +L A+   M  +++ R E   Q+       ++RT +E    V     +    +   +
Sbjct: 355 NKLMLVALTATMTKLLDARLEAFRQEHINSDPDRDRTRREPRDPVDDRDTMSYYSQSSRQ 414

Query: 75  NNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKK 134
            NH      R    +  D   G+K++IP F GT D + YL+WE+KIE VF+C  Y+E  K
Sbjct: 415 TNHRRRRHDREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESK 474

Query: 135 MRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQG 194
           +++A  EF N+A  W+  L + RRR  + PIE+W ++K +MRKR+ P HY R L  +L+ 
Sbjct: 475 VKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHNRLRN 534

Query: 195 LRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYH 254
           L QG KSV EYY+EMET+M RA ++E+ E  MSRF+GGLNR+I   ++      LE++ H
Sbjct: 535 LVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLH 594

Query: 255 YALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAES 314
            A+  E QL       KR +S+ S  S   +++KD          P   F+  K VE + 
Sbjct: 595 KAIMFEKQL-------KRRSSKPSFGSGKPSYHKDERSGFQKDYKP---FIKPK-VEDQD 654

Query: 315 FNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQL 374
             GK     K V  ++  I+ +KC+G GH + EC N+++M+I++       E E  D QL
Sbjct: 655 QKGK----GKAVMTRTRDIKGFKCQGHGHYASECSNKRIMIIKD-----TGEIESEDEQL 714

Query: 375 VEEIAAYDDEYVEEGNSISLITRKEL 394
            E  +  D E   +G    L+T K L
Sbjct: 715 EESSSTEDYEAPSKGE--LLVTMKAL 718

BLAST of CmoCh13G003100 vs. TAIR10
Match: ATCG00140.1 (ATCG00140.1 ATP synthase subunit C family protein)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPL+S+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG 33

BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848853262|ref|XP_012842863.1| (PREDICTED: uncharacterized protein LOC105963045 [Erythranthe guttata])

HSP 1 Score: 228.4 bits (581), Expect = 2.3e-56
Identity = 144/332 (43.37%), Postives = 202/332 (60.84%), Query Frame = 1

Query: 64  WRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 123
           +RG NN     +PR+     +D  G +K+ IPPF G  D EAYL+WE+KIE VF+C+ YS
Sbjct: 10  YRGANNGR---RPRQ-----DDDLGSIKVTIPPFQGRNDPEAYLEWEKKIEMVFECHNYS 69

Query: 124 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 183
           ENKK++LA  EFT++A  W+  L  ERRR  E P+ETW+E+K +MRKR+ P +Y R L  
Sbjct: 70  ENKKVKLAAIEFTDYAIIWWDQLLKERRRNYEQPVETWDEMKAIMRKRFIPNYYHRELFN 129

Query: 184 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 243
           KLQ L QG++SV EY++EME  M RA V+E+ E TM+RFL GLNREIA +V+      L 
Sbjct: 130 KLQRLTQGSRSVDEYHKEMEVAMIRASVQEDREATMARFLHGLNREIADVVEMQHYVELT 189

Query: 244 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRV 303
           DM H A+K+E QLK      K   + T     SN+W   +   +++  S K KF  +K  
Sbjct: 190 DMVHQAIKVEQQLKRRNLARKGTGAIT-----SNSWK--AAPKRDEWPSTKPKFEPSKDA 249

Query: 304 E-AESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECE 363
           + A +F     E S +   K+  ++C+KC G GH++ EC N+KVMV+   G ++S+DE E
Sbjct: 250 KPATTFKQGNTEPSTS---KNRDMKCFKCHGRGHIASECPNKKVMVLNAQGEIESEDEKE 309

Query: 364 DHDSQLVEEIAAYDDEYVEEGNSISLITRKEL 394
           D   +L      Y+ +Y  EG    L+ R+ L
Sbjct: 310 DEVDELPSFGDTYEGQYAAEGE--LLVARRAL 321

BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848908254|ref|XP_012853107.1| (PREDICTED: uncharacterized protein LOC105972678 [Erythranthe guttata])

HSP 1 Score: 224.6 bits (571), Expect = 3.4e-55
Identity = 153/366 (41.80%), Postives = 217/366 (59.29%), Query Frame = 1

Query: 36  RRAQQQRQ-ERTLQEDEGIVVQERQVDGR-----WRGRNNHATIMQPRRMERVHEDRDGG 95
           RR Q + Q    + E+E   + ER ++G      +RG NN     +PR+     +D  G 
Sbjct: 60  RRVQPRAQCGDAVDEEELEELDERPMNGGRFERGYRGANNGR---RPRQ-----DDDLGS 119

Query: 96  VKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSE 155
           +K+ IPPF G  D EAYL+WE+KIE VF+C+ YSENKK++LA  EFT++A  W+  L  E
Sbjct: 120 IKVTIPPFQGRNDPEAYLEWEKKIEMVFECHNYSENKKVKLAAIEFTDYAIIWWDQLLKE 179

Query: 156 RRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRA 215
           RRR  E P+ETW+E+K +MRKR+ P +Y R L  KLQ L QG++SV EY++EME  M RA
Sbjct: 180 RRRNYEQPVETWDEMKAIMRKRFIPNYYHRELFNKLQRLTQGSRSVDEYHKEMEVAMIRA 239

Query: 216 KVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSR 275
            V+E+ E TM+RFL GLNREIA +V+      L DM H A+K+E QLK      K   + 
Sbjct: 240 SVQEDREATMARFLHGLNREIADVVEMQHYVELTDMVHQAIKVEQQLKRRNLARKGTGAI 299

Query: 276 TSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVE-AESFNGKMNEASKTVKEKSSSIQC 335
           T     SN+W   +   +++  S K KF  +K  + A +F     E S +   K+  ++C
Sbjct: 300 T-----SNSWK--AAPKRDEWPSTKPKFEPSKDAKPATTFKQGNTEPSTS---KNRDMKC 359

Query: 336 WKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISL 394
           +KC G GH++ EC N+KVMV+   G ++S+DE ED   +L      Y+ +Y  EG    L
Sbjct: 360 FKCHGRGHIASECPNKKVMVLNAQGEIESEDEKEDEVDELPSFGDTYEGQYAAEGE--LL 405

BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 129/298 (43.29%), Postives = 188/298 (63.09%), Query Frame = 1

Query: 65  RGRNNHATIMQPRRMERVHEDRD-GGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 124
           RGR+N       RR  R+  DRD G +KLKIP F G  D EAYL+WE+K+E VFDC+ YS
Sbjct: 85  RGRDN-------RRASRM--DRDLGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYS 144

Query: 125 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 184
           E KK++LA  EFT++A  W+  L   RRR  E PI TWEE+K +MR+R+ P HY R L  
Sbjct: 145 EEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQ 204

Query: 185 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 244
           +LQ L QG++SV +Y++EME +M RA + EE E TM+RFL GLN++IA++VD      LE
Sbjct: 205 RLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMARFLHGLNQDIANVVDLQHYVELE 264

Query: 245 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNS---NTWNKDSFMNKNDSMSPKGKFVTA 304
           DM H A+K+E QLK      K+ ++RT++ S+S   + W+KD  +     + P    +  
Sbjct: 265 DMVHMAMKVERQLK------KKGSTRTNLGSSSSWKSKWSKDEKVVSKPKIEP----IKD 324

Query: 305 KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSD 358
            +       GK    S +   ++  I+C+KC G GH++ +C N++VM++R +G +D++
Sbjct: 325 HKEGGNQSKGK----SDSQHPRNRDIKCFKCLGTGHIASQCPNKRVMILRDDGDVDTE 359

BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 217.6 bits (553), Expect = 4.1e-53
Identity = 138/336 (41.07%), Postives = 205/336 (61.01%), Query Frame = 1

Query: 65  RGRNNHATIMQPRRMERVHEDRD-GGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 124
           RGR+N       RR  R+  DRD G +KLKIP F G  D EAYL+WE+K+E VFDC+ YS
Sbjct: 85  RGRDN-------RRARRI--DRDLGSIKLKIPSFQGKHDPEAYLEWEKKVELVFDCHNYS 144

Query: 125 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 184
           E KK++L   EFT++A  W+  L   RRR  E PI TWEE+K +MR+R+ P HY R L  
Sbjct: 145 EEKKVKLVAVEFTDYAIIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQ 204

Query: 185 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 244
           +LQ L QG++SV +Y++EME +M RA + EEE +TM+RFL GLN++IA++VD      LE
Sbjct: 205 RLQSLTQGSRSVEDYHKEMEIIMIRANI-EEERETMARFLHGLNQDIANVVDLQHYVELE 264

Query: 245 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNS---NTWNKDSFMNKNDSMSPKGKFVTA 304
           DM H A+K+E QLK      K+ ++RT++ S+S   + W+KD  +     + P    +  
Sbjct: 265 DMVHMAMKVERQLK------KKGSTRTNLGSSSSWKSKWSKDEKVVSKPKIEP----IKD 324

Query: 305 KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDE 364
            +       GK    S +   ++  I+C+KC G GH++ +C N++VM++R NG ++++ E
Sbjct: 325 HKEGGNQSKGK----SDSQHSRNRDIKCFKCLGTGHIASQCPNKRVMILRDNGDVETESE 384

Query: 365 CEDHDSQLVEEIAAYDDEYVEEGNSISLITRKELIM 396
            +D     +E+ A    EY  +G    ++ R+ L M
Sbjct: 385 SDDDPMPPLED-ANDGVEYPVDGK--LMVARRALNM 393

BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848902139|ref|XP_012851061.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105970777 [Erythranthe guttata])

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 152/387 (39.28%), Postives = 220/387 (56.85%), Query Frame = 1

Query: 19  LQAIQGMMKMMMEDRQERRAQQQRQERTLQ------EDEGIVVQERQVDGR-----WRGR 78
           L+ I   ++ + E+  +R+   +R + T Q      E+E   + ER ++G      +RG 
Sbjct: 38  LEQIHERIEKLEEEATKRQHPPRRVQPTAQWGGAKDEEELEELDERPMNGGRFERGYRGA 97

Query: 79  NNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKK 138
           NN     Q        +D  G +K+ I PF G  D EAYL+WE+KIE VF+C+  SENKK
Sbjct: 98  NNGRRPKQ--------DDDLGSIKVTISPFQGRTDPEAYLEWEKKIEMVFECHNCSENKK 157

Query: 139 MRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQG 198
           ++LA  EFT++A  W+  L  ERRR  E P+ETW+E+K +MRKR+   +Y R L  KLQ 
Sbjct: 158 VKLAAIEFTDYAIIWWDQLLKERRRNYEQPVETWDEMKAIMRKRFILNYYHRELFNKLQR 217

Query: 199 LRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYH 258
           L QG++SV EY++EME  M RA V+E+ E TM+RFL GLNREIA +V+      L DM H
Sbjct: 218 LTQGSRSVDEYHKEMEVAMIRASVQEDREATMARFLHGLNREIADVVEMQHYVELTDMVH 277

Query: 259 YALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAES 318
            A+K+E QLK      K   + T     SN+W   +   +++  S K KF  +K  +  S
Sbjct: 278 QAIKVEQQLKRRNLARKGTGAIT-----SNSWK--AAPKRDEWPSTKPKFEPSKDAKPVS 337

Query: 319 FNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQ 378
              + N    T   K+  ++C+KC G GH++ EC N+KVMVI   G ++S+DE ED   +
Sbjct: 338 TFKQGNTELST--SKNRDMKCFKCHGRGHIASECPNKKVMVINAQGEIESEDEKEDEVDE 397

Query: 379 LVEEIAAYDDEYVEEGNSISLITRKEL 394
           L      Y+ +Y  EG+   L+ R+ L
Sbjct: 398 LPSFGDTYEGQYAAEGD--LLVARRAL 405

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPH_CERDE1.7e-0696.97ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=... [more]
ATPH_NICTO3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 ... [more]
ATPH_AMBTC3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1[more]
ATPH_MANES3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1[more]
ATPH_NICSY3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A087FXQ7_ARAAL1.3e-4840.75Uncharacterized protein OS=Arabis alpina GN=AALP_AAs49867U000100 PE=4 SV=1[more]
E7BQD6_PEA3.7e-4836.36Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
E7BQD7_PEA8.1e-4836.44Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A0A151RW41_CAJCA2.4e-4735.73Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1[more]
Q9LQH2_ARATH9.9e-4635.23F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00140.12.8e-0790.91ATCG00140.1 ATP synthase subunit C family protein[more]
Match NameE-valueIdentityDescription
gi|848853262|ref|XP_012842863.1|2.3e-5643.37PREDICTED: uncharacterized protein LOC105963045 [Erythranthe guttata][more]
gi|848908254|ref|XP_012853107.1|3.4e-5541.80PREDICTED: uncharacterized protein LOC105972678 [Erythranthe guttata][more]
gi|568833665|ref|XP_006470999.1|2.4e-5343.29PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis][more]
gi|985456365|ref|XP_015387373.1|4.1e-5341.07PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis][more]
gi|848902139|ref|XP_012851061.1|1.6e-5239.28PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105970777 [Erythranth... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003100.1CmoCh13G003100.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 323..343
score: 3.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 327..343
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 328..341
score: 8
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 130..228
score: 4.6
NoneNo IPR availableunknownCoilCoilcoord: 30..51
scor
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 82..260
score: 2.4
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 82..260
score: 2.4

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G003100CmoCh12G007820Cucurbita moschata (Rifu)cmocmoB135