CmoCh13G003100 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr13 : 3338036 .. 3342265 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGTACTCAATGTTCAAATCAAGGGAGAGAAATTTGAATATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGATCAAAGCAAACCCATGCAGCTTGCTGATTGATGATAGTGGAAGTTGCACGAATGTGGTAAGCAGTTTCCTTGTAAAAAGACTTCAACTTTCTGTCTATCCACATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAATTCCCAAGCTCTTATTTCTTTTACTCTTGGAAGATATAAAGATGAAGTTCTTTATGATGTCGTACCAATGCATGCGGGGGACATCTTTATCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTCATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAAAAAAGAACAGAATCTGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAGGGGAGAAAAAAAAGTGAGAAAAAAAAAATTCAGTTCTTGTCCGGAAAGAACGATGAATTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGGGGATGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGTCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTAAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGAGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGCTTATCATATGTCCTAGAATCGAGACGTGAGCAAAACTCAGAAGAAGTGTGGGTGAACACGGCCAGCCAGGGAGGAAAGAAAAGGGAGGGGGGAAAGCCTTAGCCCTGAGAATCAAACGTGGCGCTGCTGGATGCTTCTAATCAATAATTGGTGAAGAGGTCCGTGGGTTCCCTTTCTTTATTGGTTGGAACTATCTTTCTATTTCTTTTTCTTTTGAATCGAATTGGTCAGGGGCTCTTTCTTTTACCTTGGAAAATCAATCATACAGTTACCTCACAGAGAGTTAGCTGCAACCACAAATGAGATAAATACTACTCTTGCTTTAGCTTTACTCACATCAGTAGCATATTTCTATGCCGGTCTTAGCTAAAAAGGATTATGAAGGTCTTTCGGGAAATACATTCAACCAACTACAATCCTTTTACCACCCATTAGCACATCTTAGAAGATTGAACAAAACCCCCTTATCACTTTGTTTTCTATCTACTTGTTGGAAATATATTAGCTGATGAATTAGTAGTAGTTGTTCTTGTTTCTTTAGTACATTTAGTAGTTCCTATACCAGTATAGGTCCTTAAATACAAGTGGTATTCAAGCTCTGATTTTAGCAACTTTAGCTGCGGCTTATATAGGCGAATCCATGGAGGGGCATCATTGATTAGTTTTCGAAATAGTCTTTTGGTTTTATCTTAGACCAAGGCAATGTATACATGGCTCAAGATAATCTAGGGAACATAAATATACAAAGAATTTTCAAATACAGAAGAGATATATACTATCTAGGGAATCAGAGTAATAGTAAACCAAAGATTGCGCTATTCCTATTCTTCAGGAATTGTCTGTCAAAAAAGGAAAGAGATCTCAACACTTTTTCCTCTCAACGATTGAACAAAAGAAAAAAAAAAGCAGAAATTACACTTAGCTTAGATTAAGAAAATCTTGATATTTCTAGGCTATGCAAGGATTCGGACTAAACTAATTCATTTGTCCATTTAGATTGATTGTCTACATGTGGGTGGGATAATTCTAAAGAAAAAGGGGGACAAAGAGAAAAAAGGATTGGTTAGGGTAGAGTGGAGTCTACTAGATGTATTGAATCGAATTGCTATAAGACAACCCTTGCCTATGGATGTTTCGAAGAATGATTACAGAACTAGAATTGGAATCCATGAATAATGAATTGGTTTACGTTAGGGAAGAAAGACATGTATATGCTCTACTATATTAGATAGAGACTAGTTATATAGGAACTCAAGATATATCTAATCCCCGCCCGCCCTACTACTGTGAGTTTAGATAGGGCTTGCAATGGGAGTCCTTCCGTTTCCTTCCTCTGTCAGATTCAATCAAGAACAAAGAATGAAGCTTTAGAAAAAAGAAAGAGCAGAACAGCAGAACAAGAGTTGTATGGATTCACAAAAACTACGGGGGTGGATAGGAAAAAGAGAGATTGAAATAGTTTGGACAATTCAATATCCATAAGATTCTAACTTACTTCTTTTTATCAGGATAAATCTTAGCGATGGAATAATCAGTGATATGAGAATGAATTGGTTGATCGTCTGTCTCATTAATCATTTCTTTCTTTTGGTGTTAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA

mRNA sequence

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA

Coding sequence (CDS)

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCGTTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA
Homology
[Close]
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-06
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLISSASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISSASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_NICTO (ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_MANES (ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match: ATPH_NICSY (ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. TrEMBL
Match: A0A087FXQ7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs49867U000100 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 119/292 (40.75%), Postives = 178/292 (60.96%), Query Frame = 1 

Query: 75  QPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAE 134
           +P R      D  GG+K++IPPF GT + EAYL WE KIE VF C   +E+ K+R+A  E
Sbjct: 68  RPERDRAPLRDTLGGLKIQIPPFHGTNNLEAYLDWETKIELVFICRECTEDTKVRIAATE 127

Query: 135 FTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKS 194
           F N+A  W+  L + RRR  + PIETW ++K VMRKR+ P +Y+R L  +L+ L QG+ S
Sbjct: 128 FYNYALSWWDQLVTTRRRAGDYPIETWNQMKAVMRKRFVPSYYQRELHQRLRDLVQGSSS 187

Query: 195 VAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIED 254
           + +Y+++MET+M RA +REE E  MSRF+GGLNR+I  L++      +E++ H A+  E 
Sbjct: 188 MEDYFKDMETLMLRADIREEGETLMSRFMGGLNRDIQDLLETQHYVEIEELLHKAVMFEQ 247

Query: 255 QLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNE 314
           Q+K  K  S  Y S    FS   ++ K+  ++      P   F   K  E +      NE
Sbjct: 248 QIKRRKAKSS-YGSTKMGFSGKPSYAKEEKLSFPRDSKP---FAKPKNEEHDP-----NE 307

Query: 315 ASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDS 366
            +K    ++  I+C+KC+G GH + EC N++VM+++ NG L+S+DE  +HD+
Sbjct: 308 KAKG-GSRARDIRCFKCQGRGHYANECSNKRVMILQDNGELESEDEQPEHDA 349

[Close]
BLAST of CmoCh13G003100 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 124/341 (36.36%), Postives = 202/341 (59.24%), Query Frame = 1 

Query: 38  AQQQRQERTLQEDEGIVVQERQVDGRWRGRNNH---ATIMQPRRMERVHEDRDGGVKLKI 97
           A +   ER L+E +G  +Q+R  +   R +N++       + RR  R   D   G+K+K+
Sbjct: 18  AMRDNFERLLRE-QGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQGGDNLRGIKIKV 77

Query: 98  PPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKE 157
           P F G +D EAYL+WE K+E +F+C+ YS  +K+++A  EF  +A  W+  L  +RRR  
Sbjct: 78  PTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRRYA 137

Query: 158 ENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRAKVREE 217
           E PI+TWEE+K +MR+R+ P +Y R L  KLQ L QG+KSV EY++EME +  RA V E+
Sbjct: 138 ERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEED 197

Query: 218 EEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFS 277
           +E TM+RFL GLN +I+ +V+ +    ++++ H A+K+E QLK  K  ++R         
Sbjct: 198 DEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR--------- 257

Query: 278 NSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGF 337
           NS T+N  S+ +K    + K    ++K    E+  GK   +S +    + S++C+KC+G 
Sbjct: 258 NSTTFNSQSWKDK----TKKEGASSSKEATVEN-KGKTITSSSSSVSTNKSVKCFKCQGQ 317

Query: 338 GHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYD 376
           GH++ +C  ++ M++       ++E  D+D +  EEI + D
Sbjct: 318 GHIASQCPTKRTMLMEENEEIVEEEDGDYDKEFGEEIPSGD 342

[Close]
BLAST of CmoCh13G003100 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.1e-48
Identity = 125/343 (36.44%), Postives = 205/343 (59.77%), Query Frame = 1 

Query: 38  AQQQRQERTLQEDEGIVVQERQVDGRWRGRNNH---ATIMQPRRMERVHEDRDGGVKLKI 97
           A +   ER L+E +G  +Q+R  +   R +N++       + RR  R   D   G+K+K+
Sbjct: 18  AMRDNFERLLRE-QGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQRGDNLRGIKIKV 77

Query: 98  PPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKE 157
           P F G +D EAYL+WE K+E +F+C+ YS  +K+++A  EF  +A  W+  L  +RRR  
Sbjct: 78  PTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRRYA 137

Query: 158 ENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRAKVREE 217
           E PI+TWEE+K +MR+R+ P +Y R L  KL+ L QG+KSV EY++EME +  RA V E+
Sbjct: 138 ERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEED 197

Query: 218 EEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFS 277
           +E TM+RFL GLN +I+ +V+ +    ++++ H A+K+E QLK  K  ++R         
Sbjct: 198 DEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR--------- 257

Query: 278 NSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGF 337
           NS T+N  S+ +K    + K    ++K    E+  GK   +S +    + S++C+KC+G 
Sbjct: 258 NSTTFNSQSWKDK----TKKEGASSSKEATVEN-KGKTITSSSSSVSTNKSVKCFKCQGQ 317

Query: 338 GHMSKECVNEKVMVI--RNGILDSDDECEDHDSQLVEEIAAYD 376
           GH++ +C  ++ M++    GI++ +D   D+D +  EEI + D
Sbjct: 318 GHIASQCPTKRTMLMEENEGIVEEED--GDYDEEFEEEIPSGD 342

[Close]
BLAST of CmoCh13G003100 vs. TrEMBL
Match: A0A151RW41_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 134/375 (35.73%), Postives = 209/375 (55.73%), Query Frame = 1 

Query: 25  MMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHE 84
           M +++ E+ +E   + +R E     +E     ER      RGRN  A    PR      +
Sbjct: 22  MQRLLRENNEELYGRIERLENYEHHEE-----ER------RGRNGGA----PR------Q 81

Query: 85  DRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQ 144
           +R  GVKL +PPF G +D EAY++WE KIEH+F CN Y E +K++LA AEF+++A  W+ 
Sbjct: 82  NRIEGVKLNVPPFKGKSDPEAYVEWELKIEHIFTCNNYDEEQKVKLAAAEFSDYALVWWN 141

Query: 145 HLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMET 204
            LK ER R EE  +ETW E+K +MRKRY P  Y R++K KLQ L QGTK V EY++E++ 
Sbjct: 142 KLKRERLRNEEPLVETWAEMKRLMRKRYVPASYVRDVKFKLQKLSQGTKRVEEYFKELDL 201

Query: 205 MMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSK 264
           +M +A + E+ E TM+RF+ GLN +I  +V+      +ED+ H ++++E QLK +    K
Sbjct: 202 LMMQANIEEDPELTMARFINGLNNDICDVVELQEFVEIEDLLHKSIQVEQQLKRKSVTKK 261

Query: 265 RYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSS 324
                     +S+ +N  S+ +KN     K   VT     + S     ++  +  ++KS 
Sbjct: 262 ----------SSSNYNSFSWKDKN----KKEVAVTLSNPASTSHGKSSSKTLEQPQKKSK 321

Query: 325 SIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQLVEEIAAYDDEYVEEGN 384
            I+C+KC+G GH + EC  ++ MV++ NG   S  +  + +   +EE     +E   EG+
Sbjct: 322 DIKCFKCQGMGHYAYECPTKRTMVLKENGDYTSQSDVSEEEEGDIEE-----EEEALEGD 356

Query: 385 SISLITRKELIMNPL 399
            + +       M+PL
Sbjct: 382 LLMIRRMMGSQMSPL 356

[Close]
BLAST of CmoCh13G003100 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.9e-46
Identity = 136/386 (35.23%), Postives = 205/386 (53.11%), Query Frame = 1 

Query: 15  NTTILQAIQGMMKMMMEDRQERRAQQQ-----RQERTLQEDEGIVVQERQVD--GRWRGR 74
           N  +L A+   M  +++ R E   Q+       ++RT +E    V     +    +   +
Sbjct: 355 NKLMLVALTATMTKLLDARLEAFRQEHINSDPDRDRTRREPRDPVDDRDTMSYYSQSSRQ 414

Query: 75  NNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKK 134
            NH      R    +  D   G+K++IP F GT D + YL+WE+KIE VF+C  Y+E  K
Sbjct: 415 TNHRRRRHDREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESK 474

Query: 135 MRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQG 194
           +++A  EF N+A  W+  L + RRR  + PIE+W ++K +MRKR+ P HY R L  +L+ 
Sbjct: 475 VKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHNRLRN 534

Query: 195 LRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYH 254
           L QG KSV EYY+EMET+M RA ++E+ E  MSRF+GGLNR+I   ++      LE++ H
Sbjct: 535 LVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLH 594

Query: 255 YALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAES 314
            A+  E QL       KR +S+ S  S   +++KD          P   F+  K VE + 
Sbjct: 595 KAIMFEKQL-------KRRSSKPSFGSGKPSYHKDERSGFQKDYKP---FIKPK-VEDQD 654

Query: 315 FNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQL 374
             GK     K V  ++  I+ +KC+G GH + EC N+++M+I++       E E  D QL
Sbjct: 655 QKGK----GKAVMTRTRDIKGFKCQGHGHYASECSNKRIMIIKD-----TGEIESEDEQL 714

Query: 375 VEEIAAYDDEYVEEGNSISLITRKEL 394
            E  +  D E   +G    L+T K L
Sbjct: 715 EESSSTEDYEAPSKGE--LLVTMKAL 718

[Close]
BLAST of CmoCh13G003100 vs. TAIR10
Match: ATCG00140.1 (ATCG00140.1 ATP synthase subunit C family protein)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 395 MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG 428
           MNPL+S+ASVIAAGLA GLASIGPGVGQGTAAG
Sbjct: 1   MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]
BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848853262|ref|XP_012842863.1| (PREDICTED: uncharacterized protein LOC105963045 [Erythranthe guttata])

HSP 1 Score: 228.4 bits (581), Expect = 2.3e-56
Identity = 144/332 (43.37%), Postives = 202/332 (60.84%), Query Frame = 1 

Query: 64  WRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 123
           +RG NN     +PR+     +D  G +K+ IPPF G  D EAYL+WE+KIE VF+C+ YS
Sbjct: 10  YRGANNGR---RPRQ-----DDDLGSIKVTIPPFQGRNDPEAYLEWEKKIEMVFECHNYS 69

Query: 124 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 183
           ENKK++LA  EFT++A  W+  L  ERRR  E P+ETW+E+K +MRKR+ P +Y R L  
Sbjct: 70  ENKKVKLAAIEFTDYAIIWWDQLLKERRRNYEQPVETWDEMKAIMRKRFIPNYYHRELFN 129

Query: 184 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 243
           KLQ L QG++SV EY++EME  M RA V+E+ E TM+RFL GLNREIA +V+      L 
Sbjct: 130 KLQRLTQGSRSVDEYHKEMEVAMIRASVQEDREATMARFLHGLNREIADVVEMQHYVELT 189

Query: 244 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRV 303
           DM H A+K+E QLK      K   + T     SN+W   +   +++  S K KF  +K  
Sbjct: 190 DMVHQAIKVEQQLKRRNLARKGTGAIT-----SNSWK--AAPKRDEWPSTKPKFEPSKDA 249

Query: 304 E-AESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECE 363
           + A +F     E S +   K+  ++C+KC G GH++ EC N+KVMV+   G ++S+DE E
Sbjct: 250 KPATTFKQGNTEPSTS---KNRDMKCFKCHGRGHIASECPNKKVMVLNAQGEIESEDEKE 309

Query: 364 DHDSQLVEEIAAYDDEYVEEGNSISLITRKEL 394
           D   +L      Y+ +Y  EG    L+ R+ L
Sbjct: 310 DEVDELPSFGDTYEGQYAAEGE--LLVARRAL 321

[Close]
BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848908254|ref|XP_012853107.1| (PREDICTED: uncharacterized protein LOC105972678 [Erythranthe guttata])

HSP 1 Score: 224.6 bits (571), Expect = 3.4e-55
Identity = 153/366 (41.80%), Postives = 217/366 (59.29%), Query Frame = 1 

Query: 36  RRAQQQRQ-ERTLQEDEGIVVQERQVDGR-----WRGRNNHATIMQPRRMERVHEDRDGG 95
           RR Q + Q    + E+E   + ER ++G      +RG NN     +PR+     +D  G 
Sbjct: 60  RRVQPRAQCGDAVDEEELEELDERPMNGGRFERGYRGANNGR---RPRQ-----DDDLGS 119

Query: 96  VKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSE 155
           +K+ IPPF G  D EAYL+WE+KIE VF+C+ YSENKK++LA  EFT++A  W+  L  E
Sbjct: 120 IKVTIPPFQGRNDPEAYLEWEKKIEMVFECHNYSENKKVKLAAIEFTDYAIIWWDQLLKE 179

Query: 156 RRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRA 215
           RRR  E P+ETW+E+K +MRKR+ P +Y R L  KLQ L QG++SV EY++EME  M RA
Sbjct: 180 RRRNYEQPVETWDEMKAIMRKRFIPNYYHRELFNKLQRLTQGSRSVDEYHKEMEVAMIRA 239

Query: 216 KVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSR 275
            V+E+ E TM+RFL GLNREIA +V+      L DM H A+K+E QLK      K   + 
Sbjct: 240 SVQEDREATMARFLHGLNREIADVVEMQHYVELTDMVHQAIKVEQQLKRRNLARKGTGAI 299

Query: 276 TSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVE-AESFNGKMNEASKTVKEKSSSIQC 335
           T     SN+W   +   +++  S K KF  +K  + A +F     E S +   K+  ++C
Sbjct: 300 T-----SNSWK--AAPKRDEWPSTKPKFEPSKDAKPATTFKQGNTEPSTS---KNRDMKC 359

Query: 336 WKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISL 394
           +KC G GH++ EC N+KVMV+   G ++S+DE ED   +L      Y+ +Y  EG    L
Sbjct: 360 FKCHGRGHIASECPNKKVMVLNAQGEIESEDEKEDEVDELPSFGDTYEGQYAAEGE--LL 405

[Close]
BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 129/298 (43.29%), Postives = 188/298 (63.09%), Query Frame = 1 

Query: 65  RGRNNHATIMQPRRMERVHEDRD-GGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 124
           RGR+N       RR  R+  DRD G +KLKIP F G  D EAYL+WE+K+E VFDC+ YS
Sbjct: 85  RGRDN-------RRASRM--DRDLGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYS 144

Query: 125 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 184
           E KK++LA  EFT++A  W+  L   RRR  E PI TWEE+K +MR+R+ P HY R L  
Sbjct: 145 EEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQ 204

Query: 185 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 244
           +LQ L QG++SV +Y++EME +M RA + EE E TM+RFL GLN++IA++VD      LE
Sbjct: 205 RLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMARFLHGLNQDIANVVDLQHYVELE 264

Query: 245 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNS---NTWNKDSFMNKNDSMSPKGKFVTA 304
           DM H A+K+E QLK      K+ ++RT++ S+S   + W+KD  +     + P    +  
Sbjct: 265 DMVHMAMKVERQLK------KKGSTRTNLGSSSSWKSKWSKDEKVVSKPKIEP----IKD 324

Query: 305 KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSD 358
            +       GK    S +   ++  I+C+KC G GH++ +C N++VM++R +G +D++
Sbjct: 325 HKEGGNQSKGK----SDSQHPRNRDIKCFKCLGTGHIASQCPNKRVMILRDDGDVDTE 359

[Close]
BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 217.6 bits (553), Expect = 4.1e-53
Identity = 138/336 (41.07%), Postives = 205/336 (61.01%), Query Frame = 1 

Query: 65  RGRNNHATIMQPRRMERVHEDRD-GGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYS 124
           RGR+N       RR  R+  DRD G +KLKIP F G  D EAYL+WE+K+E VFDC+ YS
Sbjct: 85  RGRDN-------RRARRI--DRDLGSIKLKIPSFQGKHDPEAYLEWEKKVELVFDCHNYS 144

Query: 125 ENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKT 184
           E KK++L   EFT++A  W+  L   RRR  E PI TWEE+K +MR+R+ P HY R L  
Sbjct: 145 EEKKVKLVAVEFTDYAIIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQ 204

Query: 185 KLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLE 244
           +LQ L QG++SV +Y++EME +M RA + EEE +TM+RFL GLN++IA++VD      LE
Sbjct: 205 RLQSLTQGSRSVEDYHKEMEIIMIRANI-EEERETMARFLHGLNQDIANVVDLQHYVELE 264

Query: 245 DMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNS---NTWNKDSFMNKNDSMSPKGKFVTA 304
           DM H A+K+E QLK      K+ ++RT++ S+S   + W+KD  +     + P    +  
Sbjct: 265 DMVHMAMKVERQLK------KKGSTRTNLGSSSSWKSKWSKDEKVVSKPKIEP----IKD 324

Query: 305 KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDE 364
            +       GK    S +   ++  I+C+KC G GH++ +C N++VM++R NG ++++ E
Sbjct: 325 HKEGGNQSKGK----SDSQHSRNRDIKCFKCLGTGHIASQCPNKRVMILRDNGDVETESE 384

Query: 365 CEDHDSQLVEEIAAYDDEYVEEGNSISLITRKELIM 396
            +D     +E+ A    EY  +G    ++ R+ L M
Sbjct: 385 SDDDPMPPLED-ANDGVEYPVDGK--LMVARRALNM 393

[Close]
BLAST of CmoCh13G003100 vs. NCBI nr
Match: gi|848902139|ref|XP_012851061.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105970777 [Erythranthe guttata])

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 152/387 (39.28%), Postives = 220/387 (56.85%), Query Frame = 1 

Query: 19  LQAIQGMMKMMMEDRQERRAQQQRQERTLQ------EDEGIVVQERQVDGR-----WRGR 78
           L+ I   ++ + E+  +R+   +R + T Q      E+E   + ER ++G      +RG 
Sbjct: 38  LEQIHERIEKLEEEATKRQHPPRRVQPTAQWGGAKDEEELEELDERPMNGGRFERGYRGA 97

Query: 79  NNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKK 138
           NN     Q        +D  G +K+ I PF G  D EAYL+WE+KIE VF+C+  SENKK
Sbjct: 98  NNGRRPKQ--------DDDLGSIKVTISPFQGRTDPEAYLEWEKKIEMVFECHNCSENKK 157

Query: 139 MRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQG 198
           ++LA  EFT++A  W+  L  ERRR  E P+ETW+E+K +MRKR+   +Y R L  KLQ 
Sbjct: 158 VKLAAIEFTDYAIIWWDQLLKERRRNYEQPVETWDEMKAIMRKRFILNYYHRELFNKLQR 217

Query: 199 LRQGTKSVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYH 258
           L QG++SV EY++EME  M RA V+E+ E TM+RFL GLNREIA +V+      L DM H
Sbjct: 218 LTQGSRSVDEYHKEMEVAMIRASVQEDREATMARFLHGLNREIADVVEMQHYVELTDMVH 277

Query: 259 YALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAES 318
            A+K+E QLK      K   + T     SN+W   +   +++  S K KF  +K  +  S
Sbjct: 278 QAIKVEQQLKRRNLARKGTGAIT-----SNSWK--AAPKRDEWPSTKPKFEPSKDAKPVS 337

Query: 319 FNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIR-NGILDSDDECEDHDSQ 378
              + N    T   K+  ++C+KC G GH++ EC N+KVMVI   G ++S+DE ED   +
Sbjct: 338 TFKQGNTELST--SKNRDMKCFKCHGRGHIASECPNKKVMVINAQGEIESEDEKEDEVDE 397

Query: 379 LVEEIAAYDDEYVEEGNSISLITRKEL 394
           L      Y+ +Y  EG+   L+ R+ L
Sbjct: 398 LPSFGDTYEGQYAAEGD--LLVARRAL 405

The following BLAST results are available for this feature:
BLAST of CmoCh13G003100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPH_CERDE1.7e-0696.97ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=... [more]
ATPH_NICTO3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 ... [more]
ATPH_AMBTC3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1[more]
ATPH_MANES3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1[more]
ATPH_NICSY3.8e-0693.94ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1[more]
BLAST of CmoCh13G003100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A087FXQ7_ARAAL1.3e-4840.75Uncharacterized protein OS=Arabis alpina GN=AALP_AAs49867U000100 PE=4 SV=1[more]
E7BQD6_PEA3.7e-4836.36Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
E7BQD7_PEA8.1e-4836.44Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A0A151RW41_CAJCA2.4e-4735.73Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1[more]
Q9LQH2_ARATH9.9e-4635.23F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1[more]
BLAST of CmoCh13G003100 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00140.12.8e-0790.91ATCG00140.1 ATP synthase subunit C family protein[more]
BLAST of CmoCh13G003100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848853262|ref|XP_012842863.1|2.3e-5643.37PREDICTED: uncharacterized protein LOC105963045 [Erythranthe guttata][more]
gi|848908254|ref|XP_012853107.1|3.4e-5541.80PREDICTED: uncharacterized protein LOC105972678 [Erythranthe guttata][more]
gi|568833665|ref|XP_006470999.1|2.4e-5343.29PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis][more]
gi|985456365|ref|XP_015387373.1|4.1e-5341.07PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis][more]
gi|848902139|ref|XP_012851061.1|1.6e-5239.28PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105970777 [Erythranth... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003100.1CmoCh13G003100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 323..343
score: 3.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 327..343
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 328..341
score: 8
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 130..228
score: 4.6
NoneNo IPR availableunknownCoilCoilcoord: 30..51
scor
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 82..260
score: 2.4
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 82..260
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G003100CmoCh12G007820Cucurbita moschata (Rifu)cmocmoB135
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003100Wax gourdcmowgoB0259
CmoCh13G003100Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003100Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003100Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003100Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003100Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003100Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003100Watermelon (97103) v1cmowmB186
CmoCh13G003100Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003100Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003100Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003100Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003100Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003100Watermelon (97103) v2cmowmbB198