CmoCh13G003080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase subunit beta''
Location	Cmo_Chr13 : 3322167 .. 3326022 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATCCACAAGGACGATTGATTTACCCATTCAAAGGTGAGGGGCTTACACAGAATATAGATCTTGCTACGGAGGGGGAGCGCATAAAGAGTTGTGGATACTGCTGTACGAACGAGTATATCTTACACGCAGACTTGTTGATTCAACACATTGATGATTCTGAAAGCATTTTGATCCAAACATTAATTGATCATGTAGTAGCAGACGATATATATATGGGCCCGCGATCCATTAGCATACTCAAGATATTGGTATTGGACTTATCCAGCGATTCATAACCTTTCAAACACAACCGATAGCCATTCGGACTCCCTTTACCTGTAGGAGTACATTTTGGATCTGCCCATTATGTTATGGACGAAGGAAGTCCTACTCACGGGGACATGGTCGAATTGGAAGAACCCTAGAGTATTCTTGCGGGGCAATCTATTGGAGAAGAATCGGTCAACTAACATTAAGAACTTTTCATACCGGGGCGGAGTATGAACAGGGGGGACTGCAGAACATATACGAGCTCCTGATAATGGAAAAATCTAATTCAATGAGGATTTGGTTCCACACGTACACGTCATGGGCATCCTTTTTGTGTTATTGTTATATAGACTTGTATCTAAGGAGAGTGAGGGAGGATATTATACATAACGTCACTATTCCACCCAAAAGTTGATTGACTTTGAGTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGTGCGGGAACACACACTCTGTCAAAGAAAGAGAGGGTTCAAAAAGATATTGATTATGATTCAGAGAGAAGTTTCATTTATCATTGAGAATGAAAAAAAATTGCATCTGACGTACCTGAGCAGGTATATGAGTATAGCATCAAAAATCAGTATAAGACTTTCATAATCAGGTGGTGATCCAAACCTGAACTTGCCAATCGAGTCAATTCCTATTCAATCCTGTAAACTCCTTACAGTCAAAGTGACCGAGATGCGAGGGAAAAACTTTTGTTTCACATTTCCGGGATGTGTGATCATCGGAGACTGGATCCTATGCAGGAGTACTGATGTGTACCATGCACCCGAATATACATATAGTCTAGTATAGTATAGTAGTATAGTACATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTCCCTTTTTCACTCTACAAGCAAGGATCAAGATCAAATTAATGTTCATTCTCTTTCTGTCGAATGAAAGAATATTTATAGCCTTTCAGTAAATAAAGTGAGACATTTGATGGTCTGGATCTCCCTGGTAAAAACGAAAGCATCATTCCTTATTATTCATCACTTAATCCAATCCTATCTATGTACGGGTCAATCTAATCTAACCCTGTTATTTTCCACGGTAATTATGATTGATTGGCAAAGAAGCGAAGAAATAGATTCATCATTCAAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCCTCACTCAATGGTATTTTTTGTGGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAAAAGAAAGAGTGAAGGAATTACTAAATATGGGACTACTGACTATAGGAATGCATTCAATCCTCAAGAAGATTTGATTGAGTATGGAGGAGTCAAAGACGTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCCATTTTTGTTCATTCCCGAGGAAGTTTATATATATTTGACCGAAATCTTCTTCCATAATGGTACGGAACAATAGTCTCTCTCATTGGAGTAGCTACACAACTAACTTCAAGTATAAGAAGCCGAGTAGGCGTATTGGTCCGAGTGGAGAAGGATTGAACTCAAAGGATTTTCTAGAGATATACATTTTCCTGGAGAGATAGATAAGATATCCCGACACAATGGCATCTTGCTACCACCTAAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAAGGGGATTTATGTCCAGCACACCTACCAAGAAAGAAAAAGTCTTTTGTTTTTGTTCGACCTGTAATCATTCATATATGAACTAGCCGATGGTATCAATTTAGTAACATCCCACAAGATCTATATCTATTGCAAGAAAGGCAGAATCAGGAGCTTAGAGTTATCAATTCTATCCTTTAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGAACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAACAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACTGAGACTTCGTATATCAGAAAAAGGCAAGATACGGCAGGTTCAGGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTACTAGTTATTCCAAGACAAGGGTTCCACAATCCAGCCCTTAGTCAAAATCAAGGAACTATTCGTACCGTACGTTGTTGAATAGAAATAAAGAACGCCAGCCGATCTTTTCTCATTTTGGCAGCATCGAAATGTTTGCAAATGGATCTATTCAACGATGTCAAAGATTAATTATTATGTCATGTCATAAAAGACTCCTCCCTCATCAAGTAAAAAGGAACCTCTAATTTCAATTAGGAATTCGTTAGGACCTTTAGGCCCGGCCCCTCAAATTCTTCATTTTCATTCATTTTCTCAGTTACTCATAATCCGATCTCCCTAACATTTGCAACTTGACAATTGAAAACAGACTTTGAAAGTACTTCCATATTATTTAATGGATGAAAACAGAGGTATTTTGATTGAATTCCGATCCATGCAATAACATTTCAATACATTTCTCATTGGCATTTTACGCATCATAATTATCACCATAATGATTGTGAAGAAAGACCTACATTAGCCTTGGACAGTTTCTTTATTGCAAATATATGTATAGCTAGCCCCACACTTAAAATCGGGTCAAATTCTCATTGTTCAAGTTGAGTTGATTCCGTAGTAATAAGATAAGATAAGATAAGATAAGCCTTATTTGGCCACTCAAGGAGCAATTGTTCATCGACATTATGTAAAAATCCTTGTAGAAGGAGATACATACCTTAGTTACATAGATATATGCAAAATCACGATCTGGCGACGCAGGGTCTTCCAAAAGTGTAATAAGTATTAGATAGAAGTGCGTTCTTTCTTTTGATTACCTAGAAAAGAGAATTGAGGGTTGGTTGGAATGGAACTGGCGTGTAACAAGAATGATTGGAATTCCTTGGGTTTGATTGGTGTTGAACTAAAGTGCAAAGTCGTATCTCTCTCTTTCTTTGGTTAATAAGATCAAAAAGGGTTCTCGATCCTAGGGGCAGGGGGTGGAGATCCATAATAGACATATCTAAATGATAAAAGTGTTGGTTTCATCAGAATGTCTAATGTTCACTTGGAGAACTCATTGGATTGTTGCTAGCGGAACAAACAGCAGGGCGTGCTTCGGAAGAATCCGTTACCGAGCCCCCTATTATTGGGAATAACAAAAACATCTATAAATACTCATCCAACAACAAGAATATCGGAAGCAAGAAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCGCCGAGTATCGATTGGTTGAGAGGTCGGAAAAAGAACTTCTAGGAGGAATGATACCCCTTGGTACCGGATTCAGAGAATTAGTGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCAAACTAATTTGTCGAGGGGGAGAGAGATTTTGTTCCACCACAAACAATTATTGCATTTTTGCATTTCAACGAATTTACATGATAGATCAGAACAAGCATTTCTAGGATTTCATTCTTTCTCAAAGTAG

mRNA sequence

ATGTTCGATCCACAAGGACGATTGATTTACCCATTCAAAGGTGAGGGGCTTACACAGAATATAGATCTTGCTACGGAGGGGGAGCGCATAAAGAGTTGTGGATACTGCTGTACGAACGAGTATATCTTACACGCAGACTTGTTGATTCAACACATTGATGATTCTGAAAGCATTTTGATCCAAACATTAATTGATCATGTAGTAGCAGACGATATATATATGGGCCCGCGATCCATTAGCATACTCAAGATATTGCGATTCATAACCTTTCAAACACAACCGATAGCCATTCGGACTCCCTTTACCTGTAGGAGTACATTTTGGATCTGCCCATTATGTTATGGACGAAGGAAGTCCTACTCACGGGGACATGGTCGAATTGGAAGAACCCTAGAGTATTCTTGCGGGGCAATCTATTGGAGAAGAATCGGTCAACTAACATTAAGAACTTTTCATACCGGGGCGGAGTATGAACAGGGGGGACTGCAGAACATATACGAGCTCCTGATAATGGAAAAATCTAATTCAATGAGGATTTGGTTCCACACACTTGTATCTAAGGAGAAATCAGAACAAGTGATTGCTGAGATTCGTGCGGGAACACACACTCTGTCAAAGAAAGAGAGGTATAGTACATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTCCCTTTTTCACTCTACAAGCAAGGATCAAGATCAAATTAATTTATTCCAAGACAAGGGTTCCACAATCCAGCCCTTAGTCAAAATCAAGGAACTATTCGTACCCATCGAAATGTTTGCAAATGGATCTATTCAACGATGTCAAAGATTAATTATTATGTCATGTCATAAAAGACTCCTCCCTCATCAAATATATGCAAAATCACGATCTGGCGACGCAGGGTCTTCCAAAAGTGTAATAAAAAAGAGAATTGAGGGTTGGTTGGAATGGAACTGGCGTGTAACAAGAATGATTGGAATTCCTTGGCAAAAGCCGCCCGCCGAGTATCGATTGGTTGAGAGGTCGGAAAAAGAACTTCTAGGAGGAATGATACCCCTTGGTACCGGATTCAGAGAATTAGTGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCAAACTAATTTGTCGAGGGGGAGAGAGATTTTGTTCCACCACAAACAATTATTGCATTTTTGCATTTCAACGAATTTACATGATAGATCAGAACAAGCATTTCTAGGATTTCATTCTTTCTCAAAGTAG

Coding sequence (CDS)

ATGTTCGATCCACAAGGACGATTGATTTACCCATTCAAAGGTGAGGGGCTTACACAGAATATAGATCTTGCTACGGAGGGGGAGCGCATAAAGAGTTGTGGATACTGCTGTACGAACGAGTATATCTTACACGCAGACTTGTTGATTCAACACATTGATGATTCTGAAAGCATTTTGATCCAAACATTAATTGATCATGTAGTAGCAGACGATATATATATGGGCCCGCGATCCATTAGCATACTCAAGATATTGCGATTCATAACCTTTCAAACACAACCGATAGCCATTCGGACTCCCTTTACCTGTAGGAGTACATTTTGGATCTGCCCATTATGTTATGGACGAAGGAAGTCCTACTCACGGGGACATGGTCGAATTGGAAGAACCCTAGAGTATTCTTGCGGGGCAATCTATTGGAGAAGAATCGGTCAACTAACATTAAGAACTTTTCATACCGGGGCGGAGTATGAACAGGGGGGACTGCAGAACATATACGAGCTCCTGATAATGGAAAAATCTAATTCAATGAGGATTTGGTTCCACACACTTGTATCTAAGGAGAAATCAGAACAAGTGATTGCTGAGATTCGTGCGGGAACACACACTCTGTCAAAGAAAGAGAGGTATAGTACATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTCCCTTTTTCACTCTACAAGCAAGGATCAAGATCAAATTAATTTATTCCAAGACAAGGGTTCCACAATCCAGCCCTTAGTCAAAATCAAGGAACTATTCGTACCCATCGAAATGTTTGCAAATGGATCTATTCAACGATGTCAAAGATTAATTATTATGTCATGTCATAAAAGACTCCTCCCTCATCAAATATATGCAAAATCACGATCTGGCGACGCAGGGTCTTCCAAAAGTGTAATAAAAAAGAGAATTGAGGGTTGGTTGGAATGGAACTGGCGTGTAACAAGAATGATTGGAATTCCTTGGCAAAAGCCGCCCGCCGAGTATCGATTGGTTGAGAGGTCGGAAAAAGAACTTCTAGGAGGAATGATACCCCTTGGTACCGGATTCAGAGAATTAGTGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCAAACTAATTTGTCGAGGGGGAGAGAGATTTTGTTCCACCACAAACAATTATTGCATTTTTGCATTTCAACGAATTTACATGATAGATCAGAACAAGCATTTCTAGGATTTCATTCTTTCTCAAAGTAG

Homology

[Close]

BLAST of CmoCh13G003080 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.8e-23
Identity = 67/121 (55.37%), Postives = 76/121 (62.81%), Query Frame = 1


Query: 56  ESILIQTLIDHVVADDIYMGPRSISILK-------ILRFITFQTQPIAIRTPFTCRSTFW 115
           E I IQTLI  V+ADDIYMGPR I +         I RFITFQTQPI+IRTPFTCRST W
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSW 300

Query: 116 ICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTGAEYEQGGLQN 166
           IC LCYGR    S  HG +   L  + G I  + IG    QLTLRTFHTG  +  G  ++
Sbjct: 301 ICRLCYGR----SPTHGDLVE-LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH 356

[Close]

BLAST of CmoCh13G003080 vs. Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-22
Identity = 65/121 (53.72%), Postives = 77/121 (63.64%), Query Frame = 1


Query: 56  ESILIQTLIDHVVADDIYMGPRSISILK-------ILRFITFQTQPIAIRTPFTCRSTFW 115
           E I IQTLI  V+ADDIYMGPR I+I         + RFITF+TQPI+IRTPFTCRST W
Sbjct: 241 ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSW 300

Query: 116 ICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTGAEYEQGGLQN 166
           IC LCYGR    S  HG +   L  + G I  + IG    QLTLRTFHTG  +  G  ++
Sbjct: 301 ICRLCYGR----SPTHGDLVE-LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH 356

[Close]

BLAST of CmoCh13G003080 vs. Swiss-Prot
Match: RPOC2_LOTJA (DNA-directed RNA polymerase subunit beta'' OS=Lotus japonicus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-22
Identity = 86/208 (41.35%), Postives = 104/208 (50.00%), Query Frame = 1


Query: 55  SESILIQTLIDHVVADDIYMGPRSISILK-------ILRFITFQTQPIAIRTPFTCRSTF 114
           SE ILIQTLI  V+ADDIY+G R I +         I RFI FQTQPI IRTPFTCR+T 
Sbjct: 236 SERILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTS 295

Query: 115 WICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTG-------AE 174
           WIC LCYGR    S  HG +    E + G I  + IG    QLTLRTFHTG       AE
Sbjct: 296 WICRLCYGR----SPIHGNLVELGE-AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE 355

Query: 175 YEQGGLQN-----------------------IYELLIMEKSNSMRIWFHTLVSKEK---- 210
           Y +                              +L +  +SN +    H ++   K    
Sbjct: 356 YVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDI---MHNVIIPPKSFLL 415

[Close]

BLAST of CmoCh13G003080 vs. Swiss-Prot
Match: RPOC2_BUXMI (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.3e-22
Identity = 64/122 (52.46%), Postives = 77/122 (63.11%), Query Frame = 1


Query: 55  SESILIQTLIDHVVADDIYMGPRSIS-------ILKILRFITFQTQPIAIRTPFTCRSTF 114
           +E I IQTLI  V+ADDIYMGPR I+       I  + RFITF+ QPI+IRTPFTCRST 
Sbjct: 240 TERIFIQTLIGRVLADDIYMGPRCIATRNQDVGIELVNRFITFRAQPISIRTPFTCRSTS 299

Query: 115 WICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTGAEYEQGGLQ 166
           WIC LCYGR    S  HG +   L  + G I  + IG    QLTLRTFHTG  +  G  +
Sbjct: 300 WICRLCYGR----SPTHGDLVE-LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE 356

[Close]

BLAST of CmoCh13G003080 vs. Swiss-Prot
Match: RPOC2_CARPA (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-21
Identity = 64/121 (52.89%), Postives = 76/121 (62.81%), Query Frame = 1


Query: 56  ESILIQTLIDHVVADDIYMGPRSISILK-------ILRFITFQTQPIAIRTPFTCRSTFW 115
           E I IQTLI  V+ADDIYMGPR I+I         + RFITF+TQ I+IRTPFTCRST W
Sbjct: 237 ERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSW 296

Query: 116 ICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTGAEYEQGGLQN 166
           IC LCYGR    S  HG +   L  + G I  + IG    QLTLRTFHTG  +  G  ++
Sbjct: 297 ICRLCYGR----SPTHGDLVE-LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH 352

[Close]

BLAST of CmoCh13G003080 vs. TrEMBL
Match: A0A0S2IG43_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis subsp. martinezii GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. TrEMBL
Match: A0A0S2IFJ4_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. TrEMBL
Match: A0A109X1E5_GYNPE (DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 65/142 (45.77%), Postives = 82/142 (57.75%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R I++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1265 CYRAILLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1324

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP+ N   G  R+ILFHHK+
Sbjct: 1325 ----LRGLKENVILGGMIPVGTGFRELAHRSRQHNNIPLETPKNNFFEGEMRDILFHHKE 1384

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L  FCISTNLHD SEQAF+GF+
Sbjct: 1385 LFDFCISTNLHDTSEQAFIGFN 1385

[Close]

BLAST of CmoCh13G003080 vs. TrEMBL
Match: A0A0S2IDY7_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma var. palmeri GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. TrEMBL
Match: A0A0S2IEQ9_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita ecuadorensis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-20
Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 1


Query: 55  SESILIQTLIDHVVADDIYMGPRSISILK-------ILRFITFQTQPIAIRTPFTCRSTF 114
           SE I IQTLI  V+ADDIY+G R ++          + R ITF TQ I+IRTPFTCRST 
Sbjct: 238 SERIFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTS 297

Query: 115 WICPLCYGRRKSYSRGHGRIGRTLEYSCGAIYWRRIG----QLTLRTFHTGAEYEQGGLQ 166
           WIC LCYGR    S  HG +   L  + G I  + IG    QLTLRTFHTG  +  G  +
Sbjct: 298 WICRLCYGR----SPTHGDLVE-LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE 354

[Close]

BLAST of CmoCh13G003080 vs. NCBI nr
Match: gi|1002166154|ref|YP_009236270.1| (DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 65/142 (45.77%), Postives = 82/142 (57.75%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R I++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1265 CYRAILLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1324

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP+ N   G  R+ILFHHK+
Sbjct: 1325 ----LRGLKENVILGGMIPVGTGFRELAHRSRQHNNIPLETPKNNFFEGEMRDILFHHKE 1384

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L  FCISTNLHD SEQAF+GF+
Sbjct: 1385 LFDFCISTNLHDTSEQAFIGFN 1385

[Close]

BLAST of CmoCh13G003080 vs. NCBI nr
Match: gi|952954354|gb|ALO21718.1| (RpoC2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. NCBI nr
Match: gi|952954722|gb|ALO22081.1| (RpoC2 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. NCBI nr
Match: gi|952955030|gb|ALO22384.1| (RpoC2 (plastid) [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

[Close]

BLAST of CmoCh13G003080 vs. NCBI nr
Match: gi|952954904|gb|ALO22260.1| (RpoC2 (plastid) [Cucurbita lundelliana])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 278  CQRLIIMSCHKRLLPHQIYAKSRSGDAGSSKSVIKKRIEGWLEWNWRVTRMIGIPWQKPP 337
            C R +++   K  L  Q +    S    +++ + K  + G ++W                
Sbjct: 1272 CYRAVLLGITKASLNTQSFISEASFQE-TARVLAKAALRGRIDW---------------- 1331

Query: 338  AEYRLVERSEKELLGGMIPLGTGFRELVHRSRQHNNIPLETPQTNLSRG--REILFHHKQ 397
                L    E  +LGGMIP+GTGFREL HRSRQHNNIPLETP      G  R+ILFHHK+
Sbjct: 1332 ----LRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILFHHKE 1391

Query: 398  LLHFCISTNLHDRSEQAFLGFH 418
            L HFCISTNLHD SEQAFLGF+
Sbjct: 1392 LFHFCISTNLHDTSEQAFLGFN 1392

The following BLAST results are available for this feature:

BLAST of CmoCh13G003080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC2_CUCSA	5.8e-23	55.37	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1	[more]
RPOC2_EUCGG	1.7e-22	53.72	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
RPOC2_LOTJA	2.2e-22	41.35	DNA-directed RNA polymerase subunit beta'' OS=Lotus japonicus GN=rpoC2 PE=3 SV=1	[more]
RPOC2_BUXMI	8.3e-22	52.46	DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla GN=rpoC2 PE=3 SV...	[more]
RPOC2_CARPA	1.4e-21	52.89	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2 PE=3 SV=1	[more]

BLAST of CmoCh13G003080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IG43_9ROSI	2.4e-23	45.77	DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis subsp. martinezi...	[more]
A0A0S2IFJ4_9ROSI	2.4e-23	45.77	DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis GN=rpoC2 PE=3 SV...	[more]
A0A109X1E5_GYNPE	2.4e-23	45.77	DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 P...	[more]
A0A0S2IDY7_9ROSI	2.4e-23	45.77	DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma var. palmeri GN=rp...	[more]
A0A0S2IEQ9_9ROSI	2.4e-23	45.77	DNA-directed RNA polymerase subunit OS=Cucurbita ecuadorensis GN=rpoC2 PE=3 SV=1	[more]

BLAST of CmoCh13G003080 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00170.1	2.2e-20	49.18	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]

BLAST of CmoCh13G003080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002166154\|ref\|YP_009236270.1\|	3.4e-23	45.77	DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|952954354\|gb\|ALO21718.1\|	3.4e-23	45.77	RpoC2 (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954722\|gb\|ALO22081.1\|	3.4e-23	45.77	RpoC2 (plastid) [Cucurbita ecuadorensis]	[more]
gi\|952955030\|gb\|ALO22384.1\|	3.4e-23	45.77	RpoC2 (plastid) [Cucurbita moschata]	[more]
gi\|952954904\|gb\|ALO22260.1\|	3.4e-23	45.77	RpoC2 (plastid) [Cucurbita lundelliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003080.1	CmoCh13G003080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 273..373 score: 4.58E-10coord: 63..224 score: 4.58

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003080	Cucurbita pepo (Zucchini)	cmocpeB200
CmoCh13G003080	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G003080	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G003080	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G003080	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G003080	Watermelon (97103) v2	cmowmbB198
CmoCh13G003080	Wax gourd	cmowgoB0259
CmoCh13G003080	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G003080	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G003080	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G003080	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003080	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G003080	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G003080	Watermelon (Charleston Gray)	cmowcgB179
CmoCh13G003080	Watermelon (97103) v1	cmowmB186