CmoCh13G003060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase (2.7.7.6)
LocationCmo_Chr13 : 3317955 .. 3318310 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGTGTTAGGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGTAATTGTAATTGAAGGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

mRNA sequence

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

Coding sequence (CDS)

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA
Homology
[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           LS + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_ILLOL (DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 5   EELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDF 64
           + L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK   
Sbjct: 315 DPLTTSRSTPGELVLCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGR 374

Query: 65  GKETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
            +ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 375 FRETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 416

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L+I   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 312 LTTSRSTPGELVICQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIE-GKEGRFR 371

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLH-----GDCIAIELFQTF 104
           ETLLGKRVDYSGRSVI+VGP LSLH     G+ IAIELFQTF
Sbjct: 372 ETLLGKRVDYSGRSVIIVGPSLSLHRCGLPGE-IAIELFQTF 411

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL+DNGIR QPM+DGHNK YKSF D  E GK    +
Sbjct: 313 LATSRSMPGELVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIE-GKEGRFR 372

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 373 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 412

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: A0A0D3M6I0_9ASPA (DNA-directed RNA polymerase subunit OS=Habenaria pantlingiana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: A0A0U1VGQ9_9ASPA (DNA-directed RNA polymerase subunit OS=Nervilia aragoana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKAYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: D5IBP2_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Habenaria hexaptera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 166 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: I6Q0L5_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Phragmipedium exstaminodium GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 258 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 317

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 318 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 357

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: I6Q440_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Paphiopedilum wardii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 258 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 317

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 318 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 357

[Close]
BLAST of CmoCh13G003060 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-26
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|129714403|gb|ABO31257.1| (rpoC1 (chloroplast) [Nervilia aragoana])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKAYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|294440745|gb|ADE74776.1| (RNA polymerase beta' chain, partial (chloroplast) [Habenaria hexaptera])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 166 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|810932692|ref|YP_009129522.1| (RNA polymerase beta' subunit (chloroplast) [Habenaria pantlingiana])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|953244749|ref|YP_009179944.1| (DNA-directed RNA polymerase beta' chain (chloroplast) [Bletilla striata])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 69/104 (66.35%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 5   EELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDF 64
           E L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK   
Sbjct: 312 ELLATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGR 371

Query: 65  GKETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
            +ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 372 FRETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|944541386|ref|YP_009175264.1| (RNA polymerase beta' subunit (chloroplast) [Phragmipedium longifolium])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

The following BLAST results are available for this feature:
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC1_SPIOL2.7e-2566.67DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=... [more]
RPOC1_ILLOL3.6e-2564.42DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 S... [more]
RPOC1_PHAVU3.6e-2565.69DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV... [more]
RPOC1_VITVI3.6e-2565.69DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1[more]
RPOC1_DIOEL3.6e-2564.71DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=... [more]
BLAST of CmoCh13G003060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D3M6I0_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit OS=Habenaria pantlingiana GN=rpoC1 PE=3 SV=1[more]
A0A0U1VGQ9_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit OS=Nervilia aragoana GN=rpoC1 PE=3 SV=1[more]
D5IBP2_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Habenaria hexaptera GN=rpoC1 P... [more]
I6Q0L5_9ASPA8.0e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Phragmipedium exstaminodium GN... [more]
I6Q440_9ASPA8.0e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Paphiopedilum wardii GN=rpoC1 ... [more]
BLAST of CmoCh13G003060 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.13.4e-2665.69ATCG00180.1 DNA-directed RNA polymerase family protein[more]
BLAST of CmoCh13G003060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|129714403|gb|ABO31257.1|8.8e-2466.67rpoC1 (chloroplast) [Nervilia aragoana][more]
gi|294440745|gb|ADE74776.1|8.8e-2466.67RNA polymerase beta' chain, partial (chloroplast) [Habenaria hexaptera][more]
gi|810932692|ref|YP_009129522.1|8.8e-2466.67RNA polymerase beta' subunit (chloroplast) [Habenaria pantlingiana][more]
gi|953244749|ref|YP_009179944.1|1.2e-2366.35DNA-directed RNA polymerase beta' chain (chloroplast) [Bletilla striata][more]
gi|944541386|ref|YP_009175264.1|1.2e-2366.67RNA polymerase beta' subunit (chloroplast) [Phragmipedium longifolium][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009536 plastid
molecular_function GO:0016779 nucleotidyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003060.1CmoCh13G003060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 14..103
score: 8.0
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 13..103
score: 1.37

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003060Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003060Watermelon (97103) v2cmowmbB198
CmoCh13G003060Wax gourdcmowgoB0259
CmoCh13G003060Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003060Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003060Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003060Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003060Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003060Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003060Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003060Watermelon (97103) v1cmowmB186
CmoCh13G003060Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003060Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003060Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003060Melon (DHL92) v3.6.1cmomedB203