CmoCh13G003050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr13 : 3316077 .. 3317934 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACTTATCAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTATTACGATCATTGGAGGAAGAATACCTAACCCTGAGGAGACTCCTGAATCTTTTCAATTGCTCGTTCGAGAATTATGTTGGCTTTGGAATGGAATCATTTCCTTGTATCTGAGAATAACTTCTAGATTAAGAGGAAGGAAGCTTAAATGAATCAAACAATTTGTTCTATGATCGATCGGTATAAACATCAACAACTTTGAATGAATTGGATTAGTTTCTTTTCTCCTCAACAAATAAGTTCAGTGCTTGGGCCAATAAAACCCTAGCTAATGGCAAGATAGTTGGAGAGGTAACAAAACCCCTATACTTTTTTTCATTACAAAACGAATAAATCTGAAATGGATTATTTTGTGAAAGACTTTTCGGGCCTATAAAAAGCGGTATTTGTGCTTGTGAAAATTCTCGAGTAATCGGAGAAAGAAGATTCGCGATGAACAATGCAGAGTCTAATTTGTTGATTCTCGGATCGGATACGAAGATATCAAATGGGCTATATGAAACAGAAATGCCCAGTAACTCTTGTATGTGTGGTATTTGAAATAGTTATATCGGGAATCCTTTAGCTTTAGATAACCCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGTGATTTGATGTTGATTTTATGGATTCCCAATGAGAAACAGTCATCCCATTCATTCAATCTCATTGGGATGCCCTGGATCTGACATGTGGCTTGCTTGGTAGGAGTACCATGAAGCTCAGAATTGTGGGTGTAGTCAATACTCCCATCCCAAATCAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTCTCAGTTCTACCTGGTGCGAAACAAAATGGATTTCCTTTGTGTTATTCATTCTTTTTCTTTCTGAAAAGAAATTATGTTACTACAATAAGCTAATATTTCATGCATGGTGAAAGGAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATGGTGTCATAACCGTCGACGAGGTTCAGTAGGGCCAGCCAGGCCAGATCGAATGGAACGATACCAAGTCAGTCCCTTATTCCAAGGTACTCTTTATTCATTTGAATTAAGGGGATTTGTCATTCCAAGGGAAATAGACTACTCACAAATTGCACATTTCCTTTTTTTCCGATGTAATGGATATATTGAATAAAGAACTCATCACATTGAAATCAATTGGAAAGTCAAAGAATCCATGAAATCTTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTCGGTGTTTTATAGAATTGGAAAGTGGGAACTCCTTTATTTGATGTAACTACTTGAGCTGAGCCGGATGAAAAGAAACTTTCACGTCCGATTTGGAAAGGGGGAGGTCGTATAGTGGAGTATATTTGTCTTTTGCTAGGCCCATAGCTAAAAACCTACTTTCGTACGATTACGGGGTTAATTCGAATATGAAATCCAATCCTGAAAATATAGCATCCCGCTTTTTGTGACTACCCAAGGCTTTCTTCGATACATTTCAAAATTGAGAAATTTCTTCCGGAGCAGGTGCTATACGAGAACAATTAGTCGATCCGTATTTGCGACTTATTATAGATTATTGGTTGGCAGAATGGAAAGAATTAGGCGAAGAGGGACCTGCATGTAATTAATGGGAAGATCCACAAGTTGGAAGAAGAAAGGATTTTGGGGCTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAAAGAACCCAAATGTATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAGACCGATCATTCAGATAGTTGGGGGTAA

mRNA sequence

ATGCTTACTTATCAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTATTACGATCATTGGAGGAAGAATACCTAACCCTGAGGAGACTCCTGAATCTTTTCAATTGCTCGTTCGAGAATTATGTTGGCTTTGGAATGGAATCATTTCCTTACTTTTCGGGCCTATAAAAAGCGGTATTTGTGCTTGTGAAAATTCTCGAGTAATCGGAGAAAGAAGATTCGCGATGAACAATGCAGAGTCTAATTTGTTGATTCTCGGATCGGATACGAAGATATCAAATGGGCTATATGAAACAGAAATGCCCAGTAACTCTTGTATTTATATCGGGAATCCTTTAGCTTTAGATAACCCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGAGTACCATGAAGCTCAGAATTGTGGGTGTAGTCAATACTCCCATCCCAAATCAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTCTCAGTTCTACCTGGCTTTAAGGACATGGTGTCATAACCGTCGACGAGGTTCAGTAGGGCCAGCCAGGCCAGATCGAATGGAACGATACCAAGTCAGTCCCTTATTCCAAGGTACTCTTTATTCATTTGAATTAAGGGGATTTGTCATTCCAAGGGAAATAGACTACTCACAAATTGCACATTTCCTTTTTTTCCGATGTGCTATACGAGAACAATTAGTCGATCCGTATTTGCGACTTATTATAGATTATTGGTTGGCAGAATGGAAAGAATTAGGCGAAGAGGGACCTGCATATCCACAAGTTGGAAGAAGAAAGGATTTTGGGGCTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAAAGAACCCAAATGTATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAGACCGATCATTCAGATAGTTGGGGGTAA

Coding sequence (CDS)

ATGCTTACTTATCAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTATTACGATCATTGGAGGAAGAATACCTAACCCTGAGGAGACTCCTGAATCTTTTCAATTGCTCGTTCGAGAATTATGTTGGCTTTGGAATGGAATCATTTCCTTACTTTTCGGGCCTATAAAAAGCGGTATTTGTGCTTGTGAAAATTCTCGAGTAATCGGAGAAAGAAGATTCGCGATGAACAATGCAGAGTCTAATTTGTTGATTCTCGGATCGGATACGAAGATATCAAATGGGCTATATGAAACAGAAATGCCCAGTAACTCTTGTATTTATATCGGGAATCCTTTAGCTTTAGATAACCCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGAGTACCATGAAGCTCAGAATTGTGGGTGTAGTCAATACTCCCATCCCAAATCAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTCTCAGTTCTACCTGGCTTTAAGGACATGGTGTCATAACCGTCGACGAGGTTCAGTAGGGCCAGCCAGGCCAGATCGAATGGAACGATACCAAGTCAGTCCCTTATTCCAAGGTACTCTTTATTCATTTGAATTAAGGGGATTTGTCATTCCAAGGGAAATAGACTACTCACAAATTGCACATTTCCTTTTTTTCCGATGTGCTATACGAGAACAATTAGTCGATCCGTATTTGCGACTTATTATAGATTATTGGTTGGCAGAATGGAAAGAATTAGGCGAAGAGGGACCTGCATATCCACAAGTTGGAAGAAGAAAGGATTTTGGGGCTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAAAGAACCCAAATGTATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAGACCGATCATTCAGATAGTTGGGGGTAA
Homology
[Close]
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-28
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-27
Identity = 96/253 (37.94%), Postives = 119/253 (47.04%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P  K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIEK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W                  +Y + PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSW------------------KYSI-PLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LR+IIDY L EWKELGEEGP   +     +GRRKDF  RR
Sbjct: 240 TGAG------AIREQLDDLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-26
Identity = 93/253 (36.76%), Postives = 118/253 (46.64%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPITK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  L++IIDY   EWKELGEEGP   +     +GRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLQIIIDYSFLEWKELGEEGPTGNEWEDRKIGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match: RPOC1_DAUCA (DNA-directed RNA polymerase subunit beta' OS=Daucus carota GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-26
Identity = 93/253 (36.76%), Postives = 120/253 (47.43%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++    + E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKKDRKSCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGLFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LR+IID  L EWKELGE+GP   +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match: RPOC1_RANMC (DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 96/257 (37.35%), Postives = 120/257 (46.69%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-NLLILGSDTK------------ISNGLYE 112
           +FGPIKSGICAC N RVIG  +      E   +  + S  +            +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P  K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPVVKN-----PTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 292
             A       AIREQL D  LRLIID  L EWKELGEEGPA  +     +GRRK F  RR
Sbjct: 240 TGA------SAIREQLADLDLRLIIDCSLLEWKELGEEGPAGNEWEDRKMGRRKSFLVRR 264

[Close]
BLAST of CmoCh13G003050 vs. TrEMBL
Match: G3ETX6_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo subsp. melo GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.9e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPACNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TrEMBL
Match: X2EYB2_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TrEMBL
Match: X2F7V3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TrEMBL
Match: X2F3M3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TrEMBL
Match: X2F0N3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-26
Identity = 92/253 (36.36%), Postives = 118/253 (46.64%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPITK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF I R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDIFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LR+II+  L EWK+LGEEGP   +     + RRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 1    MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL 43
            MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LLVREL
Sbjct: 1007 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVREL 1048

[Close]
BLAST of CmoCh13G003050 vs. NCBI nr
Match: gi|346578182|ref|YP_004841774.1| (RNA polymerase beta [Cucumis melo subsp. melo])

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPACNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. NCBI nr
Match: gi|270039012|ref|YP_247590.2| (RNA polymerase beta' subunit [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. NCBI nr
Match: gi|595645453|gb|AHM88912.1| (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 60  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 119

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 120 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 179

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 180 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 239

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 240 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 260

[Close]
BLAST of CmoCh13G003050 vs. NCBI nr
Match: gi|67511389|emb|CAJ00749.1| (RNA polymerase beta chain (chloroplast) [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 67  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 126

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 127 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 186

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 187 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 246

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 247 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 267

[Close]
BLAST of CmoCh13G003050 vs. NCBI nr
Match: gi|74027092|gb|AAZ94642.1| (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 98/253 (38.74%), Postives = 121/253 (47.83%), Query Frame = 1 

Query: 53  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYE 112
           +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y 
Sbjct: 67  IFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYL 126

Query: 113 TEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVI 172
             +PS    YI N   LD PLKELEGLVYCD            ++ P +K       + +
Sbjct: 127 KRLPS----YIAN--LLDKPLKELEGLVYCD----------FSFARPIAK-----KPTFL 186

Query: 173 NRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYS 232
                F   +++W ++                    PLF      F  +GF   R  + S
Sbjct: 187 RLRGSFEYEIQSWKYS-------------------IPLF------FTTQGFDTFRNREIS 246

Query: 233 QIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARR 288
             A       AIREQL D  LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RR
Sbjct: 247 TGAG------AIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRR 267

The following BLAST results are available for this feature:
BLAST of CmoCh13G003050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC1_CUCSA3.4e-2838.74DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3[more]
RPOC1_VITVI8.4e-2737.94DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1[more]
RPOC1_CARPA5.4e-2636.76DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1[more]
RPOC1_DAUCA5.4e-2636.76DNA-directed RNA polymerase subunit beta' OS=Daucus carota GN=rpoC1 PE=3 SV=2[more]
RPOC1_RANMC1.2e-2537.35DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus GN=rpoC1 PE=3... [more]
BLAST of CmoCh13G003050 vs. TrEMBL
Match NameE-valueIdentityDescription
G3ETX6_CUCME2.9e-2638.74DNA-directed RNA polymerase subunit OS=Cucumis melo subsp. melo GN=rpoC1 PE=3 SV... [more]
X2EYB2_LAGSI3.8e-2638.74DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1[more]
X2F7V3_LAGSI3.8e-2638.74DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1[more]
X2F3M3_LAGSI3.8e-2638.74DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1[more]
X2F0N3_LAGSI3.8e-2638.74DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1[more]
BLAST of CmoCh13G003050 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.14.4e-2636.36ATCG00180.1 DNA-directed RNA polymerase family protein[more]
ATCG00190.13.0e-1483.33ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of CmoCh13G003050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|346578182|ref|YP_004841774.1|4.2e-2638.74RNA polymerase beta [Cucumis melo subsp. melo][more]
gi|270039012|ref|YP_247590.2|5.5e-2638.74RNA polymerase beta' subunit [Cucumis sativus][more]
gi|595645453|gb|AHM88912.1|5.5e-2638.74RNA polymerase beta (chloroplast) [Lagenaria siceraria][more]
gi|67511389|emb|CAJ00749.1|5.5e-2638.74RNA polymerase beta chain (chloroplast) [Cucumis sativus][more]
gi|74027092|gb|AAZ94642.1|5.5e-2638.74RNA polymerase beta I subunit [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003050.1CmoCh13G003050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003050Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003050Watermelon (97103) v2cmowmbB198
CmoCh13G003050Wax gourdcmowgoB0259
CmoCh13G003050Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003050Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003050Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003050Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003050Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003050Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003050Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003050Watermelon (97103) v1cmowmB186
CmoCh13G003050Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003050Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003050Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003050Melon (DHL92) v3.6.1cmomedB203