CmoCh13G003040 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr13 : 3305185 .. 3315887 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGGTGAGGGGAGTTCTGCCCCGGGGATGACCCTTCGAGCATTACAGGAAGCATCGAATGCTCTTGTTACAGAATAGGCAGGAGGGTAGGTTTGGATTGGACAATAAGGGCTTTGCTAGACGGTCTTGTCTTTCTTTCTCTTTGTTCAAATCTAGTGCTGGCTGGCGTGGAAGGTTTAGCCCAGTGAATCAAGCAATTGAATCAGGAAGCGCTGCTCCTCTACTCAGGATAAGGGCTGAAGATGTAGTTTCTGTTTGCAAGCGGGAAGCGAGCAATGCCTCTCTTGTGGCTTGTTGCTTTGTGCTGCGATTATGAAAGGGATGGGCCAAGCAGCAAATTAGCCATTGATTTTCTAATATGGTGTCTAGTTAATGGATTCTGCGTCCGCGTATAAAAGACCAGCAGCAAGCAGCTCCATCATCCACATCTCATATGCTAGGGGGTCCCATTCGTCATGTGCCGGATCCCATTCCCAGTAAGTTGAGCAGCCTTGAACCCATACCCTTGATTCCCGCCTTGAGCCTCAGCCCGAAGGCCCAGAGGTTGCTGTTTGGTCTAGATAAGCAGGCATGGACAGGCTCCTCGAGCGGATACCATTCCAATGGGGAAATCTTCCTATTACCGGTGGAGAACTCAAAGGATCCAAACTCCTTAGGTGATATGAACCAAAAGACATCAACCCTACAATATCCTTCAATGGAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTAGGTTATAATTTAGAGTAATTTAGAGTTATTGTATTTCATTAATGTAGTTTAAGACTTTTAATTTACTTTAGGTTACAATTACATAATGGTTAATTATTTCCATTAAGTATGAATGTTACAACTTTTGGAATACCTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAAAGACTTGGAAAATATAATAAAGAAGCATTTGTGCTTTTCTTTAGCCGATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGTGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGCCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTTAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGGGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCTTTTATCATTTGGTATCAGAGCATTTGGTCGACGTTCTTTGGCCGCTCTAGAGGTGAAATATCTTTACTATTATTTTTTTTGTATCAATCTTGTTTCTCTCTCAGATTATAAAAAAAAAAAAAAAAAGTCAGCCTTTACATTCTTGACCTAGTACCAAAAGCCTACCTTTGAGTGTTAAACACGAGTGTCCCTGAGTGAAATTTTTGTGAGAAGTGTGGTGAGGTCCCTTGATAACAATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTTCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGTACTCAATGTTCAAATCAAGGGAGAGAAATTTGAATATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGATCAAAGCAAACCCATGCAGCTTGCTGATTGATGATAGTGGAAGTTACACAAATGTGGTAAGCAGTTTCCTTGTAAAAAGACTTCAACTTTCTGTCTATCCACATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAATTCCCAAGCTCTTATTTCTTTTACTCTTGGAAGATATAAAGATGAAGTTCTTTATGATGTCGTACCAATGCATGCGGGGGACATCTTTATCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTCATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAAAAAAGAACAGAATCTGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAGGTGAGAAATAAAGTGAGAAAAAAAAAAAATTCAGTTCTTGTCCGGAAAGAACGATGAATTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGGGGATGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGCCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTTAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGGGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGCTTATCAGGTTGCATGTAGAATCATTCAAGCTTGACATGATCAATCTTGCTTGTAGAGTGATTCGAATCTCAAACAAGTGTTATTGCATTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATATTCTTGCCTTGAGACATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTAATTGATTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCGTTTCTTCTCAATTTGATTTTTATTTATTTTCATCTTTTTAGTTTTTAATCGACCCAAAGTTCAAAATTCAATCTTTGCTCTATTTAAAATTTGAGAGGTGAGAATGAGAACTTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAATTAGATTCGAGGACGGATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAAAGACATCAACCTTACAATATCCTTCAATGGAGATGTGAAGAAAAGGTTGTCAAAATTATTAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTATAATTTAGAGTAATTTAGAGTTATTGTATTTCATTAATGTAGTTTAAAACTTTTAATTTACTTTAGGTTACAATTACATAATGGTTAATTATTGCCATTAAGTATGAATGTTACAACTTTTGGAATACCTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAAAGACTTGGAAAATATAATAAAGAAGCATTTGTGCTTTTCTTTAGCCGATGGCTAAGTTTCTTTGCAATTCTACGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGTGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGATATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGGTTTGAGATATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTATTGATTCCTTATCTTATCATTAGGTCTTGTTTTGTAAGCTTGAAGCTTTTCAACCTATCGAGATTAACTTACAACTCCACTAACCTAAGCTTACCAGATCAAGTAGATCACTACCGAAACCCGTACCGGACACGCTTCTTTCTCGACTTCGCCTCGTTCTGCCAACGTCGACCCTTCCCGTACGAAGCCTTTCCCACCTTATCTTATTGGTCTTCTTTCCTCTGTCGCTGATAAATGTTGAACGTATAGCGCTCTTCTGCTGAGAAATGCCCTCCTTTTGTCTTCACCTTGTGGTCCCGAGACATATGGTTTTGGTACAGAAAAGAAATGTCACCAAGGGGCCGCCTTATCAGTAGATCTCCCTCCTCTCGTATCTCTAGTAAACAAACTTCGAGCTGCTGAACCGGGCATAGAACAAGGGTATATTGTTTTTCTGCTTGTTTTGAAAGCTTGAAACGACAGACAAATGGTGACTATGAGAGGGCTTGCTACTGAGCTTCTTGTGTTCATTCCATCTTTCTTGATTATGGGGTCCGCGCAACAAGAGCGCTTCCTCTTTTTCTTTGCCACCATGAGACCTTGCCTTATTTGGTTGGTAGTGTAGAGGTGGAATCAACGCAATTCGTACTGGTAGTAGTGAGATGTCGCCTTCACTGGGTTGGAATAGTAGGTCTGTCTCTCGAGCCTTGTTCTCCGCGGTCATTCTCACAGCCCTTGCCTTTCTCACTATCAAATTTACACCTGACTTGTTGAACCAAGCTAAGGTCACTAATGAATCTACATATCCTAGGGATGAGAAATTCTTCGTTGGTGTTAAGTTAACCATGAATGGACTCTAACTCTAATGGCTGAGCTAGGTATGTATGCTTACCAATCTTGTCCCGAGCGCGCGGGAGACTGCCTCCTGTACCGATGTTAATTGAATGAATGGACACCAGAACAAGTTCGTGCTCCGAATCTATAAAGAGCTCGTGCCTGAGTCCTTCCCCAAAAAGGATTGTTCCTTGTTGGTACGAGCTTTTCTTGTTCTCTTCTACCCTGGGATTGAATTGTTTTCCTAATGTTGTAAGGGACTCCCAAGCACATTCATTCTTTCTCTACCCTGTCTACTAAGAAAGAGAAGTTAGTGAGAAGATTCGCTTAATTGAATTGATCGTAGATGTATTGGGAATCTTCCTTGAATTGAGAGGAAGTAGGAGCATCGTGTTAAGACAAGGGCGGTGGGTAGGTAAAGACAGGGTGGGTTTACAATCAAAGCTCCAACTGTCTGTCATGCCGGGTAAACCACTAGGGTATGAATTTGGATCTAGGACCGGTAGCGGGCGAAATTACGTGCGTGAGAGGAAGTCTTGGTGGAGCCGAGGATGGAATAGCACAACTTAGTGACTAGGAGCATAGGGAGATCCCGTTGCGCCTTGTTTTTGTTTGACCGGCCTATCCTCTTTCAAGAAGCAAGCTCCCTCCGGTTGTCCAGTCCCTGGGCATCTCTCGGTTTTTGTGTTGGGAGATTAGGCGGCAGTTTCAAGACTTGAAAGCTTGACGAAGAAGCAAATCAAGCCCTAACTACTCTTTCAAATCAAGCCCTAACTACTCTTTCTTTGAGAAAAGGGCTTTTACTAGTCAAGTGGTAAGGTAGGGCGTATTCATTGAAGAAAACAGACTTTAGGAAAGGGGTTCAGGTAGCTCAGCTGGTTAGAGAAAAGGACTGAAAATCCTTGTGTCAGTGGTTCGAATCTACTTCTAAGCAAAGGGTCCAAAGGACACGTAGCCGGGACCTGATTTAGAAATTCAAATGAAAGAGGAAGCACAAAACAAGTAGATTTGATAAACAAAGCTGTAGATTACTCGGATTGGGTCTCGCGTCCCTGTGCCAAAATGGGCGAGTTTGGTTTGAGTGTTCATCGATTGGGTAGATCCATATGCTCCGGGGGGGTAAGACGAGGTGTAGCGTAGTCTGGTCAGCGCATCTATTTTGGATACAGNGGGCCATAGGTTCGAATCTTGTCACCTTGATAAAGAGGATGATCTCCTTTTCTATCACACGTAAAATTGTCTGTCATTCTTTTGTCTTTCCCCTAACTTTATCAATCATCGGAAGGGTTTTGGTTATCATATATCGAGATAATTATTATGAAAAAGCTTTCCACTGGTGTGACTTAGATACCCTTTCTTTCTTTGTGGTATCAGTCATGCTATTTGAATAGCCTGAAATCATCATAGCCTCTCCACCGGTTCCGAAGACTCCTTCGGCATCAATATGCTCCAATGAAAGAGATCAGACCACCCTTTCTTTCTTTGTGGTATCAATCATGCTATTTGAATAGCCTGAAATCATCATAGCCTCTCCACCGGTTCCGAAGACACCTTCGGCATCAATGTGCTCCAATGAAAGAGATCAGACCCTTTCCTTCACTAGAACCGGAGCGAGCTCTTTTCGCACGCAATCTCGAAGCCCAATTAGCTCATGGACTGTCTCCTCAACCCTGGCGAGTACGAGAGCTTGGTAAGAGAGAATGTCGAATGAGAAAGACATTTAATTACGGCAACTAACTAGATAGCGAACTTTTTGGTAGAAACTGAATGATCCCTTGGCTTGGGCAAGAAAAGGAAAGGGTAAGAGTGAGTACTTACTCTTATTCCGACGATAGGAAAGTTTGAGCTGAAAGATTGAATCTCATCGGGTAAGAAAGGCGGCTTAGCAGGGTTCTCCAAACGTATACTTATTAGGTTTCTCCAAACGTATAAACAAAAAGAGGAAGCAACCGGTCCTAAAGAGGATACCGATACGCATACATTCTCGCATGGAAGAACCTAGCTGAACCAGATCAAGGGTCCTAACCAAGTCCGGCTAACCTTCTTTGGCTGGCCCCCGCCCCTTGTAACGAGGTCAACCCGTACGTGCTCCTTTCGTTTAGCGAGATAGCTTACCAGCTCTTTCGGCTCCAGTAGTATGAAAAGCGGAATCCTCATCCTGAGTCGAGTCTGCATTGCCATACGAATCGACATCGGACAAACCAAGAACTCCTATTTTTTCTTTAACGAAAGCATATATAACAGTTTCGAGAAAACAAACCAACCTCTTTTAAAAAAGGAGTCACTCTGCCTTGATCACCGTGGACATACGCAGCTCCCACTTTACCTTCGCCTACTGGGAAAAGGAAAGTTCCCTCACGATAGGCCCTCTCAGCTCCCGAATGTCTTTCTATCAATTGAGAGAGGTACAGAATAGTACAACAAACCAACAAGACAAGAATGGACTCATAAGATGGGCGGAAAGCTATTTCATTTTGTTATCCACCAAGGGTTAGTGCACTTTGGTAGTTGCGAATGTTGCCGTAATCAATGTATTTCTCGTTTCGTGTTAGCTCCTCCAAGAGCTTCTTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTATTGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATTGAGCAACCTTTCTTTCCCTGCCTGGTATGCTTTCCCGCTTATCGCGCAACTAGCCAACTAGCCAAAGAGAGAGGGAGAGGGGTGAAAGAGCGAGACCGAGTGAAAGAGTGAAAGAAGGAATCTTTCAGATTTACTTACAGTTAAGTCGAATTGATTCTTCGATAGTCTTGACTTAATAATGGATTAATTACCTTTACTAGATTTGATCCAATAAGGGAGATACTGTTTTATCCCCAAAAATACGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGCGTGATAGGATTTTTCTTGTTTTTTGAGTGTTATAGGAGAGTTCCCGAGGGAAATCAGGGTAAAGCATGTGTTTATAGGAGAGTTTCCGAGAGAAATCAGGGTAAAGCATCTCTTTTATCCCCAAAAATACGGGGGGAGGATAGAAAAAATCAGAAATGGTCTTTACAGGATCCGGAGAATGAATCTGGTATTGTTGTCTTGCTTTCGTCTCCCTTCTTTCTTTGATTTACTCTCTCTCCTGTAAAGGAATAGAATATCTGATTCTGATTCTTTGACAATATTACCTAACTAACCGGATTGAACTGTAAAGGGGCGAAGCCGTGAGACCGAGAGGGAGAGAGATCATCTCAATCAATTTGTATGTGCATTTTGTCCTGTACTTGCTTGCTTAGCTTTCTTAGCCAACATCTCTGGTTTCTCCCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTTGAAGCCGAAAGACTGATTTTTGCATAAAGTAGGTTCATAAGCCTTATTTGCAGGAAGACCAGTTGATATGGTTTGAAATCCATTAGGAGTCCCTTCACGAATGAATGTAGGACAAATATTTGTTTGAGTGCTCATTCGGGTGGTTAGTGGGGAGTTCGCTAAATAGACATTATCTCATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACAACTAGTCTTTTCCTCATTCTATTCAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA

mRNA sequence

ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA

Coding sequence (CDS)

ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA
Homology
[Close]
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match: RPOB_SOLBU (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match: RPOB_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match: RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. TrEMBL
Match: A0A0S0ZKU8_9ASTE (DNA-directed RNA polymerase subunit beta (Fragment) OS=Discophora guianensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-08
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFEHPVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRAGNPFEHPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. TrEMBL
Match: V6BQG7_9LAMI (DNA-directed RNA polymerase subunit beta OS=Schwalbea americana GN=rpoB PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRMGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. TrEMBL
Match: B2Y605_9ASTR (DNA-directed RNA polymerase subunit beta (Fragment) OS=Richterago amplexifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

[Close]
BLAST of CmoCh13G003040 vs. TrEMBL
Match: B2Y5V0_9ASTR (DNA-directed RNA polymerase subunit beta (Fragment) OS=Cnicothamnus lorentzii GN=rpoB PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

[Close]
BLAST of CmoCh13G003040 vs. TrEMBL
Match: B2Y5W9_9ASTR (DNA-directed RNA polymerase subunit beta (Fragment) OS=Gochnatia hiriartiana GN=rpoB PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

[Close]
BLAST of CmoCh13G003040 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYI +
Sbjct: 904 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYILK 951

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: gi|937634974|gb|ALI91067.1| (RpoB, partial (chloroplast) [Discophora guianensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR GNPFEHPVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRAGNPFEHPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: gi|575669202|ref|YP_008964859.1| (RNA polymerase beta subunit (chloroplast) [Schwalbea americana])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRMGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: gi|186885871|gb|ACC93343.1| (RNA polymerase beta subunit, partial (chloroplast) [Gochnatia hiriartiana])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: gi|186885869|gb|ACC93342.1| (RNA polymerase beta subunit, partial (chloroplast) [Gochnatia hypoleuca])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: gi|186885791|gb|ACC93303.1| (RNA polymerase beta subunit, partial (chloroplast) [Richterago angustifolia])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGKS RIFDGR G+PFE PVIIGKPYIF+
Sbjct: 860 SELYE-ASKQTANPWVFEPEYPGKS-RIFDGRTGDPFEQPVIIGKPYIFK 907

The following BLAST results are available for this feature:
BLAST of CmoCh13G003040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOB_NICTO6.2e-0964.00DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE... [more]
RPOB_SOLBU6.2e-0964.00DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 S... [more]
RPOB_SOLLC6.2e-0964.00DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV... [more]
RPOB_SOLTU6.2e-0964.00DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1[more]
RPOB_ATRBE6.2e-0964.00DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1[more]
BLAST of CmoCh13G003040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S0ZKU8_9ASTE8.1e-0866.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Discophora guianensis GN=... [more]
V6BQG7_9LAMI1.4e-0766.00DNA-directed RNA polymerase subunit beta OS=Schwalbea americana GN=rpoB PE=3 SV=... [more]
B2Y605_9ASTR5.3e-0764.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Richterago amplexifolia G... [more]
B2Y5V0_9ASTR5.3e-0764.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Cnicothamnus lorentzii GN... [more]
B2Y5W9_9ASTR5.3e-0764.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Gochnatia hiriartiana GN=... [more]
BLAST of CmoCh13G003040 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00190.11.3e-0962.00ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of CmoCh13G003040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937634974|gb|ALI91067.1|1.2e-0766.00RpoB, partial (chloroplast) [Discophora guianensis][more]
gi|575669202|ref|YP_008964859.1|2.0e-0766.00RNA polymerase beta subunit (chloroplast) [Schwalbea americana][more]
gi|186885871|gb|ACC93343.1|7.6e-0764.00RNA polymerase beta subunit, partial (chloroplast) [Gochnatia hiriartiana][more]
gi|186885869|gb|ACC93342.1|7.6e-0764.00RNA polymerase beta subunit, partial (chloroplast) [Gochnatia hypoleuca][more]
gi|186885791|gb|ACC93303.1|7.6e-0764.00RNA polymerase beta subunit, partial (chloroplast) [Richterago angustifolia][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009536 plastid
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0097159 organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003040.1CmoCh13G003040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003040Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003040Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003040Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003040Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003040Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003040Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003040Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003040Watermelon (97103) v1cmowmB186
CmoCh13G003040Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003040Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003040Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003040Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003040Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003040Watermelon (97103) v2cmowmbB198
CmoCh13G003040Wax gourdcmowgoB0259