CmoCh13G003030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-directed DNA polymerase homolog
LocationCmo_Chr13 : 3264614 .. 3268722 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAAGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACAAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGATAACTCAACAAACTCTTGTTTCTTTTACAATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAAATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGTTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGAGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTACTTTTGCAAGAGTTTGAACATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACTGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGTGTATGTGTGTTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGGAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTATTTTGATGACATCCTTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTAGTTTAAGAAACGAATGTTTGTATGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTGAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACTCTTGAATGAACTTGTTAAGAAAAATGTCTCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCGTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGGGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTTGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGGTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAATTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAGTGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTATAAATAAGCATATATAA

mRNA sequence

ATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAAGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACAAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGATAACTCAACAAACTCTTGTTTCTTTTACAATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAAATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGTTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGAGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTACTTTTGCAAGAGTTTGAACATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACTGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGGAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTGAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACTCTTGAATGAACTTGTTAAGAAAAATGTCTCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCGTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGGGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTTGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGGTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAATTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAGTGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTATAAATAAGCATATATAA

Coding sequence (CDS)

ATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAAGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACAAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACAAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGATAACTCAACAAACTCTTGTTTCTTTTACAATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAAATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGTTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGAGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTACTTTTGCAAGAGTTTGAACATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACTGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGGAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTGAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACTCTTGAATGAACTTGTTAAGAAAAATGTCTCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCGTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGGGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTTGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGGTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAATTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAGTGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTATAAATAAGCATATATAA
Homology
[Close]
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 360.5 bits (924), Expect = 7.4e-98
Identity = 224/629 (35.61%), Postives = 334/629 (53.10%), Query Frame = 1 

Query: 614  EEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKKNVSFIWEKDQE 673
            + K  AI+D+PTPK V + + F G+ ++YRRFI N S IA  +   +       W + Q+
Sbjct: 832  QHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQD 891

Query: 674  LAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVL--MQNQRPLM----FFSEKL 733
             A   LK  L ++P+    N ++ + +  DAS  GIGAVL  + N+  L+    +FS+ L
Sbjct: 892  KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSL 951

Query: 734  TGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLE 793
              A   YP  + EL  +++AL  +++ L  K F + TDH SL  L+ +N+  RR  +WL+
Sbjct: 952  ESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLD 1011

Query: 794  FIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFE-----------------HI 853
             + T+ + ++Y  G +N+VADA+SR    +    +R +  E                 H+
Sbjct: 1012 DLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHM 1071

Query: 854  KDLYQHDMF------FAPFVESCEKG-LIVDNYLLLDGFLFRKGKLCIPSCSIRELLVRE 913
            K+L QH++       F  + +  E       NY L D  ++ + +L +P    +  ++R 
Sbjct: 1072 KELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVP-IKQQNAVMRL 1131

Query: 914  AHGGGLMA-HHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKS-RLQPHGLYSPL 973
             H   L   H GV+ T   +S  ++ PK++H + +    C+ C+  KS R + HGL  PL
Sbjct: 1132 YHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPL 1191

Query: 974  PVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFRE 1033
            P+  G W+DISMDFV GLP T    + I VVVDRFSK AHFI   KT DA  + DL FR 
Sbjct: 1192 PIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRY 1251

Query: 1034 VVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAML 1093
            +   HG P++I SDRDV+  +  ++ L  +LG K   S+  HPQTDGQ+E   +T+  +L
Sbjct: 1252 IFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1311

Query: 1094 RAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNF 1153
            RA +  N++ W   LP IEF YN     T   +PFEI  G+ P TP     I S + VN 
Sbjct: 1312 RAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP----AIKSDDEVNA 1371

Query: 1154 DANAKVEFVHKLHK---QVKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPT 1208
             +   VE    L     Q KEQ+E    ++ T  N+ RK ++   GD V VH R   F  
Sbjct: 1372 RSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH-RDAYFKK 1431

[Close]
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 360.5 bits (924), Expect = 7.4e-98
Identity = 224/629 (35.61%), Postives = 335/629 (53.26%), Query Frame = 1 

Query: 614  EEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKKNVSFIWEKDQE 673
            + K  AI+D+PTPK V + + F G+ ++YRRFI N S IA  +   +       W + Q+
Sbjct: 806  QHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQD 865

Query: 674  LAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVL--MQNQRPLM----FFSEKL 733
             A + LK+ L ++P+    N ++ + +  DAS  GIGAVL  + N+  L+    +FS+ L
Sbjct: 866  KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSL 925

Query: 734  TGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLE 793
              A   YP  + EL  +++AL  +++ L  K F + TDH SL  L+ +N+  RR  +WL+
Sbjct: 926  ESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLD 985

Query: 794  FIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFE-----------------HI 853
             + T+ + ++Y  G +N+VADA+SR    +    +R +  E                 H+
Sbjct: 986  DLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHM 1045

Query: 854  KDLYQHDMF------FAPFVESCEKG-LIVDNYLLLDGFLFRKGKLCIPSCSIRELLVRE 913
            K+L QH++       F  + +  E       NY L D  ++ + +L +P    +  ++R 
Sbjct: 1046 KELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVP-IKQQNAVMRL 1105

Query: 914  AHGGGLMA-HHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKS-RLQPHGLYSPL 973
             H   L   H GV+ T   +S  ++ PK++H + +    C+ C+  KS R + HGL  PL
Sbjct: 1106 YHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPL 1165

Query: 974  PVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFRE 1033
            P+  G W+DISMDFV GLP T    + I VVVDRFSK AHFI   KT DA  + DL FR 
Sbjct: 1166 PIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRY 1225

Query: 1034 VVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAML 1093
            +   HG P++I SDRDV+  +  ++ L  +LG K   S+  HPQTDGQ+E   +T+  +L
Sbjct: 1226 IFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1285

Query: 1094 RAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNF 1153
            RA    N++ W   LP IEF YN     T   +PFEI  G+ P TP     I S + VN 
Sbjct: 1286 RAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP----AIKSDDEVNA 1345

Query: 1154 DANAKVEFVHKLHK---QVKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPT 1208
             +   VE    L     Q KEQ+E    ++ T  N+ RK ++   GD V VH R   F  
Sbjct: 1346 RSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH-RDAYFKK 1405

[Close]
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-89
Identity = 211/655 (32.21%), Postives = 334/655 (50.99%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            Y +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +   LN L+KK
Sbjct: 613  YHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQR---- 722
            +V + W   Q  A   +K+ L S P+    +F     +E DAS V +GAVL Q       
Sbjct: 673  DVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732

Query: 723  -PLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHESLKHLRVQ 782
             P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH +L   R+ 
Sbjct: 733  YPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG-RIT 792

Query: 783  NKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR---------------RYVLL 842
            N+    N+R A+W  F++ F + I Y+ G  N +ADALSR                   +
Sbjct: 793  NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFV 852

Query: 843  NTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGKLCIPS-CS 902
            N ++        +   Y +D      + + +K  + +N  L DG L   K ++ +P+   
Sbjct: 853  NQISITDDFKNQVVTEYTNDTKLLNLLNNEDKR-VEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 903  IRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRL-QP 962
            +   ++++ H  G + H G+    +++   F    +R  + +    C  C+  KSR  +P
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 963  HGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHI 1022
            +G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC K+  A+  
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 1023 ADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVN 1082
            A +F + V+   G PK I++D D  F S  W+    K    + +S    PQTDGQTE  N
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1092

Query: 1083 RTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-LTPIDLLPI 1142
            +T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L+P++L   
Sbjct: 1093 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSF 1152

Query: 1143 PSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPGDWVWVHFR 1202
              K   N     +V       + VKE +   N K+    + K ++I  F+PGD V V   
Sbjct: 1153 SDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1212

Query: 1203 KERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFSVVDLSPF 1226
            K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF V  L  +
Sbjct: 1213 KTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-89
Identity = 211/655 (32.21%), Postives = 334/655 (50.99%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            Y +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +   LN L+KK
Sbjct: 613  YHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQR---- 722
            +V + W   Q  A   +K+ L S P+    +F     +E DAS V +GAVL Q       
Sbjct: 673  DVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732

Query: 723  -PLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHESLKHLRVQ 782
             P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH +L   R+ 
Sbjct: 733  YPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG-RIT 792

Query: 783  NKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR---------------RYVLL 842
            N+    N+R A+W  F++ F + I Y+ G  N +ADALSR                   +
Sbjct: 793  NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFV 852

Query: 843  NTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGKLCIPS-CS 902
            N ++        +   Y +D      + + +K  + +N  L DG L   K ++ +P+   
Sbjct: 853  NQISITDDFKNQVVTEYTNDTKLLNLLNNEDKR-VEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 903  IRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRL-QP 962
            +   ++++ H  G + H G+    +++   F    +R  + +    C  C+  KSR  +P
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 963  HGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHI 1022
            +G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC K+  A+  
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 1023 ADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVN 1082
            A +F + V+   G PK I++D D  F S  W+    K    + +S    PQTDGQTE  N
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1092

Query: 1083 RTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-LTPIDLLPI 1142
            +T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L+P++L   
Sbjct: 1093 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSF 1152

Query: 1143 PSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPGDWVWVHFR 1202
              K   N     +V       + VKE +   N K+    + K ++I  F+PGD V V   
Sbjct: 1153 SDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1212

Query: 1203 KERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFSVVDLSPF 1226
            K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF V  L  +
Sbjct: 1213 KTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-89
Identity = 211/655 (32.21%), Postives = 334/655 (50.99%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            Y +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +   LN L+KK
Sbjct: 613  YHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQR---- 722
            +V + W   Q  A   +K+ L S P+    +F     +E DAS V +GAVL Q       
Sbjct: 673  DVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKY 732

Query: 723  -PLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHESLKHLRVQ 782
             P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH +L   R+ 
Sbjct: 733  YPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG-RIT 792

Query: 783  NKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR---------------RYVLL 842
            N+    N+R A+W  F++ F + I Y+ G  N +ADALSR                   +
Sbjct: 793  NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFV 852

Query: 843  NTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGKLCIPS-CS 902
            N ++        +   Y +D      + + +K  + +N  L DG L   K ++ +P+   
Sbjct: 853  NQISITDDFKNQVVTEYTNDTKLLNLLNNEDKR-VEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 903  IRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRL-QP 962
            +   ++++ H  G + H G+    +++   F    +R  + +    C  C+  KSR  +P
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 963  HGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHI 1022
            +G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC K+  A+  
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 1023 ADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVN 1082
            A +F + V+   G PK I++D D  F S  W+    K    + +S    PQTDGQTE  N
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1092

Query: 1083 RTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-LTPIDLLPI 1142
            +T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L+P++L   
Sbjct: 1093 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSF 1152

Query: 1143 PSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPGDWVWVHFR 1202
              K   N     +V       + VKE +   N K+    + K ++I  F+PGD V V   
Sbjct: 1153 SDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1212

Query: 1203 KERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFSVVDLSPF 1226
            K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF V  L  +
Sbjct: 1213 KTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003030 vs. TrEMBL
Match: A0A151UF56_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_049062 PE=4 SV=1)

HSP 1 Score: 963.4 bits (2489), Expect = 2.8e-277
Identity = 451/646 (69.81%), Postives = 541/646 (83.75%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            ++VSS GV+VDEEK++AI++WPTPKNVSEVRSFHGLASFYRRF+K+FST+A+ LNE+VKK
Sbjct: 150  FVVSSKGVQVDEEKIRAIQEWPTPKNVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIVKK 209

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 722
            +V F W + QE AF+ LK KL++AP+ ALPNF  +FEIECDAS VGIGAVLMQ   P+ +
Sbjct: 210  HVGFKWGEKQEKAFSELKHKLTNAPILALPNFAKSFEIECDASNVGIGAVLMQEGHPIAY 269

Query: 723  FSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRH 782
            FSEKL GA+L YPTYDKELYALVRAL+TWQHYL PKEF+IH+DHESLK+L+ Q KLN+RH
Sbjct: 270  FSEKLNGAALNYPTYDKELYALVRALRTWQHYLLPKEFVIHSDHESLKYLKGQGKLNKRH 329

Query: 783  AKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAP 842
            AKW+EF+E FPYVIK+K+GK N+VADALSRR+ LL+ L  +L G E +KD+Y HD+ FA 
Sbjct: 330  AKWVEFLEQFPYVIKHKKGKGNVVADALSRRHNLLSMLETKLFGLESLKDMYMHDVDFAE 389

Query: 843  FVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDML 902
               +CEK    + Y   +GFLF+  +LC+P CSIRELLV E+H GGLM H GV KT ++L
Sbjct: 390  NFAACEK-FSENGYYRHNGFLFKANRLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEIL 449

Query: 903  SEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRT 962
             EHF+ P M+HDVHK C  CI CK+AKS+++PHGLY+PLPVP+ PWIDISMDFVLGLPRT
Sbjct: 450  QEHFYWPHMKHDVHKFCDHCIVCKKAKSKVKPHGLYTPLPVPDFPWIDISMDFVLGLPRT 509

Query: 963  RKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLS 1022
            + G DSIFVVVDRFSKMAHFIPC K +DA H+ADLFFREVVRLHG+P+SIVSDRD KFLS
Sbjct: 510  KNGKDSIFVVVDRFSKMAHFIPCKKVNDACHVADLFFREVVRLHGLPRSIVSDRDTKFLS 569

Query: 1023 HFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFA 1082
            HFWR LWGKLGTKL++STTCHPQTDGQTEVVNRT+  +LR ++ KN+K WE+ LP +EFA
Sbjct: 570  HFWRTLWGKLGTKLLFSTTCHPQTDGQTEVVNRTLGTLLRTVLKKNIKFWEEHLPHVEFA 629

Query: 1083 YNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPS-KEFVNFDANAKVEFVHKLHKQVKEQI 1142
            YNR VHSTTKC+PFEIVYGFNPLTP+DLLP+P+  EF + DA AK E+V KLH+QVK QI
Sbjct: 630  YNRAVHSTTKCSPFEIVYGFNPLTPLDLLPMPNISEFKHKDAQAKAEYVKKLHEQVKAQI 689

Query: 1143 EKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDN 1202
            EK+      + NKGRK VIF+PGDWVWVH RKERFP QRKSKL PRGDGPFQVLE+INDN
Sbjct: 690  EKKIESYVKQANKGRKKVIFEPGDWVWVHMRKERFPEQRKSKLQPRGDGPFQVLEKINDN 749

Query: 1203 AYKIDLPGKYGVSATFSVVDLSPFDVGDG-LDSRTNPSQEGENDMN 1247
            AYKIDLPG+YGVS++F+V DL+ FD GD  +  R N +QEGEND++
Sbjct: 750  AYKIDLPGEYGVSSSFNVADLTHFDAGDEFIALRKNVAQEGENDVD 794

[Close]
BLAST of CmoCh13G003030 vs. TrEMBL
Match: A5BSP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 7.1e-273
Identity = 485/868 (55.88%), Postives = 589/868 (67.86%), Query Frame = 1 

Query: 465  QEFEHLFSEEMPSSLPPLKGLNTRLT-----------SFLARPFQTDQLIGLIQRRLKR- 524
            QE+E +F  ++PS LPP++G+  ++            ++ + P +T +L   ++  L + 
Sbjct: 472  QEYEDVFPNDVPSGLPPIRGIEXQIDFVSXATIPNRXAYRSNPEETKELQRQVEXLLTKG 531

Query: 525  --------------------------YKGKAINKITIKYRHPIPRLDDMLDELHGCSLFT 584
                                         + IN IT+KYRHPIPRLDDMLDELHG  +FT
Sbjct: 532  HVRESLSPCVVXVXLVXKKDGTWRMCVDXRXINNITVKYRHPIPRLDDMLDELHGSCVFT 591

Query: 585  KIDLKSGYHQIRMHIGDEWETAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLVS 644
            KIDLKSGYHQIRM  GDEW+TAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH LR ++  
Sbjct: 592  KIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRSFISR 651

Query: 645  SNGVEVDEEKVKAIKDWPTPKNVSE-VRSFHGLA-------------------SFYRRFI 704
               V  D+  V +       KN+ E +   H +                    SFYR F+
Sbjct: 652  FVVVYFDDILVYS-------KNLDEYINHLHCVLALCFLVMLLVXKELRWMRKSFYRXFV 711

Query: 705  KNFSTIASLLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASG 764
            K+FST+A  L E+VKK V F W    + AF  +KE L                       
Sbjct: 712  KDFSTLAVPLTEIVKKFVGFKWGSXXDRAFIXIKEMLC---------------------- 771

Query: 765  VGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDH 824
             GI A+LMQ +RP+ +FSEKL G +L YPTYDKELYALVRAL+TWQHYLWPKEF+IHTDH
Sbjct: 772  -GIRAILMQEKRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDH 831

Query: 825  ESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLG 884
            ESLKHL+ Q KLNRRHAKW+EFIETF YVIKYKQGKENIVADALSRRY L++TLNA+LLG
Sbjct: 832  ESLKHLKGQGKLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLG 891

Query: 885  FEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHG 944
            FE++K+LY +D  FA    +CEK                + +LC+P+ S+RELLVREAHG
Sbjct: 892  FEYVKELYANDDDFASVYGACEKTTF-------------ENRLCVPNSSMRELLVREAHG 951

Query: 945  GGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNG 1004
            GGLM H GV KT D+L EHFF PKM+ DV + C RCI C+QAKSR+ PHGLY+PLPVP+ 
Sbjct: 952  GGLMGHFGVRKTLDVLHEHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSA 1011

Query: 1005 PWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLH 1064
            PW+DISMDFVLGLPR+R G  SIFVVVDRFSKM +FI CHK DDA HIA+LFFRE+VRLH
Sbjct: 1012 PWVDISMDFVLGLPRSRNGRXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFREIVRLH 1071

Query: 1065 GIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIID 1124
            G+P+SIVSDRDVKFLS+FW+VLW KLGTKL++STTCHPQTDGQTEVVNRT++        
Sbjct: 1072 GVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTLSTF------ 1131

Query: 1125 KNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAK 1184
                                VHSTT  +PFEIVYGFNPLT +DLLP+   E  + D   K
Sbjct: 1132 --------------------VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNEMXSLDGEKK 1191

Query: 1185 VEFVHKLHKQVKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLP 1244
            VE V KLH+ V++ IEK+N +  ++ NKG   V+F+PGDWVWVH RKERFPT+R SKL P
Sbjct: 1192 VEMVKKLHESVRKHIEKKNEQYVSKANKGXXQVLFEPGDWVWVHMRKERFPTRRXSKLHP 1251

Query: 1245 RGDGPFQVLERINDNAYKIDLPGKYGVSATFSVVDLSPFDVGDGLDSRTNPSQEGENDMN 1272
            RGDGPFQVLERINDNAYK+D+PG+Y +SATF+V DLSPFDVGD  DS TNP +E  ND N
Sbjct: 1252 RGDGPFQVLERINDNAYKLDIPGEYNISATFNVSDLSPFDVGD--DSXTNPFEEKGNDEN 1268

[Close]
BLAST of CmoCh13G003030 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 933.7 bits (2412), Expect = 2.4e-268
Identity = 436/649 (67.18%), Postives = 531/649 (81.82%), Query Frame = 1 

Query: 597  NHVLREYLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLL 656
            N V   ++VS++GV+VDEEKVKAI++WP+PK+V EVRSFHGLA FYRRF+K+FST+A+ L
Sbjct: 1105 NLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPL 1164

Query: 657  NELVKKNVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQN 716
             E++KKNV F WE+ QE AF  LKEKL+ AP+ +LP+F  TFEIECDASGVGIG VLMQ+
Sbjct: 1165 TEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQD 1224

Query: 717  QRPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQN 776
            ++P+ +FSEKL GA+L YPTYDKELYALVRALQT QHYLWPKEF+IHTDHESLKHL+ Q 
Sbjct: 1225 KKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQ 1284

Query: 777  KLNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQH 836
            KLN+RHA+W+EFIETFPYVIKYK+GK+N+VADALSRRYVLL++L+A+LLGFEHIK LY +
Sbjct: 1285 KLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYAN 1344

Query: 837  DMFFAPFVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVS 896
            D  F     SCEK      Y   DGFLF   +LCIP+ S+REL +REAHGGGLM H GVS
Sbjct: 1345 DSDFEKIYSSCEK-FAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVS 1404

Query: 897  KTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFV 956
            KT  ++ +HF  P M+ DV ++C RC  CKQAK++ QPHGLY+PLP+P+ PW DISMDFV
Sbjct: 1405 KTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFV 1464

Query: 957  LGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDR 1016
            +GLPRTR G DSIFVVVDRFSKMAHFIPCHKTDDA HIA+LFFREVVRLHG+PK+IVSDR
Sbjct: 1465 VGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDR 1524

Query: 1017 DVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCL 1076
            D KFLS+FW+ LW KLGTKL++STTCHPQTDGQTEVVNRT++ +LRA+I KNLKTWEDCL
Sbjct: 1525 DTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCL 1584

Query: 1077 PFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQ 1136
            P +EFAYN  +HS +K +PF+IVYGFNP TP+DL+P+P  E V+ D   K E V ++H+Q
Sbjct: 1585 PHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQ 1644

Query: 1137 VKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLE 1196
             K+ IE++  + A   NK RK VIF  GD VW+H RKERFP +RKSKL+ R DGPF+VL+
Sbjct: 1645 AKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLK 1704

Query: 1197 RINDNAYKIDLPGKYGVSATFSVVDLSPFDVGDGLDSRTNPSQEGENDM 1246
            RIN+NAY +DL GKY VS +F+V DL PF + D  D R+NP Q GE+D+
Sbjct: 1705 RINNNAYSLDLQGKYNVSNSFNVADLFPF-IADNTDLRSNPFQLGEDDV 1751

[Close]
BLAST of CmoCh13G003030 vs. TrEMBL
Match: Q8L7J3_MAIZE (Gag-pol polyprotein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 932.6 bits (2409), Expect = 5.2e-268
Identity = 440/676 (65.09%), Postives = 533/676 (78.85%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            Y+V+  G+EVD+ KV+AI  WP PK +++VRSF GLA FYRRF+K+FSTIA+ LNEL KK
Sbjct: 922  YVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKK 981

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 722
             V F W K QE AFN LK+KL+ APL  LP+F  TFE+ECDASG+G+G VL+Q  +P+ +
Sbjct: 982  GVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAY 1041

Query: 723  FSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRH 782
            FSEKL+G+ L Y TYDKELYALVR L+TWQHYLWPKEF+IH+DHESLKH+R Q KLNRRH
Sbjct: 1042 FSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRH 1101

Query: 783  AKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAP 842
            AKW+EFIE+FPYVIK+K+GKENI+ADALSRRY LLN L+ ++ G E IKD Y HD  F  
Sbjct: 1102 AKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKD 1161

Query: 843  FVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDML 902
             +  C+ G   + Y++ DGF+FR  KLCIP+ S+R LL++EAHGGGLM H G  KT D+L
Sbjct: 1162 VLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDIL 1221

Query: 903  SEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRT 962
            + HFF PKMR DV ++  RC  C++AKSRL PHGLY PLPVP+ PW DISMDFVLGLPRT
Sbjct: 1222 AGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRT 1281

Query: 963  RKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLS 1022
            RKG DS+FVVVDRFSKMAHFIPCHKTDDA HIADLFFRE+VRLHG+P +IVSDRD KFLS
Sbjct: 1282 RKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLS 1341

Query: 1023 HFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFA 1082
            HFWR LW KLGTKL++STTCHPQTDGQTEVVNRT++ MLRA++ KN+K WEDCLP IEFA
Sbjct: 1342 HFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFA 1401

Query: 1083 YNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIE 1142
            YNR +HSTTK  PF+IVYG  P  PIDL+P+PS E +NFDA  + E + KLH+  KE IE
Sbjct: 1402 YNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIE 1461

Query: 1143 KQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNA 1202
            + N++     +KGRK + F+PGD VW+H RKERFP  RKSKLLPR DGPF+VLE+INDNA
Sbjct: 1462 RMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNA 1521

Query: 1203 YKIDLPGKYGVSATFSVVDLSPFDVGD--GLDSRTNPSQEGENDMN-HDQGISIP----- 1262
            Y++DLP  +GVS TF++ DL P+ +G+   L+SRT   QEGEND + H    SIP     
Sbjct: 1522 YRLDLPADFGVSPTFNIADLKPY-LGEEVELESRTTQMQEGENDEDIHTTDASIPIQVPI 1581

Query: 1263 QGPITRTRAKKLQQTI 1271
             GPITR RA++L   +
Sbjct: 1582 SGPITRARARQLNHQV 1596

[Close]
BLAST of CmoCh13G003030 vs. TrEMBL
Match: A4K7M3_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica PE=4 SV=1)

HSP 1 Score: 929.1 bits (2400), Expect = 5.8e-267
Identity = 437/686 (63.70%), Postives = 538/686 (78.43%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            ++VS  G++VDE KVKAIKDWPTP+NVS+V+SF GLA FYRRF++ FSTIA+ LNEL KK
Sbjct: 922  FVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKK 981

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 722
             V+F W + QE AF  LK++LS  PL  LP+F  TFE+ECDASG+GIG VLMQN +P+ +
Sbjct: 982  GVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAY 1041

Query: 723  FSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRH 782
            FSEKL GA L Y  YDKELYALVRAL+TWQHYLWPKEF+IH+DHE+LK+L+ Q KLNRRH
Sbjct: 1042 FSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRH 1101

Query: 783  AKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAP 842
            AKW+EFIETFPYV+KYK+GKENIVADALSR+ VLLN L  ++ G E IK+LY  D+ F+ 
Sbjct: 1102 AKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSE 1161

Query: 843  FVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDML 902
                C  G   + Y + DGFLFR  KLC+P CS+R LL++E H GGLM H G  KTYDML
Sbjct: 1162 PYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDML 1221

Query: 903  SEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRT 962
            ++HF+ PKMR DV ++  RC+ C +AKS+L PHGLY+PLPVP+ PW DISMDFVLGLPRT
Sbjct: 1222 ADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRT 1281

Query: 963  RKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLS 1022
            ++G DSIFVVVDRFSKMAHFIPCHK+DDA HIA LFF E+VRLHG+PK+IVSDRD KFLS
Sbjct: 1282 KRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLS 1341

Query: 1023 HFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFA 1082
            +FW+ LW KLGT+L++STTCHPQTDGQTEVVNRT++ +LRA+I KNLK WE+CLP +EFA
Sbjct: 1342 YFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFA 1401

Query: 1083 YNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIE 1142
            YNR VHSTT   PFE+VYGF PL+PIDLLP+P +E  + +A+ +  +V K+H++ KE IE
Sbjct: 1402 YNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIE 1461

Query: 1143 KQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNA 1202
            K++   A   NK RK V F+PGD VWVH RK+RFP +RKSKL+PRGDGPF+VL +INDNA
Sbjct: 1462 KRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNA 1521

Query: 1203 YKIDLPGKYGVSATFSVVDLSP-FDVGDGLDSRTNPSQEGEND-----MNHDQGISIP-- 1262
            YKI+LP  YGVS+TF+V DL+P F + D   SR+ P QEGE+D     ++       P  
Sbjct: 1522 YKIELPEDYGVSSTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHATSSTKQPSS 1581

Query: 1263 ------QGPITRTRAKKLQQTINKHI 1275
                  QGP+TR+RAKKLQ  +N  +
Sbjct: 1582 NTKDTIQGPLTRSRAKKLQVQVNSFL 1607

[Close]
BLAST of CmoCh13G003030 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-16
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 603 YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
           +++S  GV  D  K++A+  WP PKN +E+R F GL  +YRRF+KN+  I   L EL+KK
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 663 NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTF 699
           N S  W +   LAF  LK  +++ P+ ALP+ +  F
Sbjct: 97  N-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131

[Close]
BLAST of CmoCh13G003030 vs. NCBI nr
Match: gi|823145097|ref|XP_012472412.1| (PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii])

HSP 1 Score: 1289.6 bits (3336), Expect = 0.0e+00
Identity = 651/1230 (52.93%), Postives = 866/1230 (70.41%), Query Frame = 1 

Query: 4    VQRVHEEAFCSTIFSRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFL 63
            ++ V  + F  + + R++ Q+LQ L QG +SVEDYYK+M+  M R +++ED EA MARFL
Sbjct: 303  MKAVMRKRFVPSYYHRELYQRLQNLTQGNRSVEDYYKDMEIAMIRADVEEDREATMARFL 362

Query: 64   NGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQQRSQRYSSKTFPN-STSTWKKDSKNI 123
             GLN +IA+  + Q Y  + +++H+AIK+E+Q++++     ++T+P  ST+ W + +   
Sbjct: 363  AGLNRDIANIVEFQHYVEVMDMVHMAIKVEKQLKRKGP---TQTYPTTSTNKWAQGTSKA 422

Query: 124  DYKHRNQEINEKPQAKFEKGESSRTGKEKVEKSNVRNRDLKCWRCQGVGHYSRDCPNARI 183
              + +   +  KP        S+   K K E  +  +RD+KC++CQG GH +  CPN R+
Sbjct: 423  PNRPKKPFVAAKPNQV-----SADASKNKNEAVSNHSRDIKCFKCQGRGHIASQCPNRRV 482

Query: 184  MTIKE-GEIVTDDEAHDDINEETDESEEFSEEDPTHISLVTRQALNTHIKEDGLDQRENL 243
            M ++  GEI ++DE  ++     +E EE        + LV +++LN  + ++   QR+N+
Sbjct: 483  MVVRSNGEIESEDEQEEEPEIPMEEGEELELPVEGEL-LVVKRSLNIQVAKEE-QQRDNI 542

Query: 244  FQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVRITQQ 303
            F TRC VQ   CS++ID GSCTNV SS+LV++L L T  HP PYKLQWLND GE+++T+Q
Sbjct: 543  FHTRCHVQGKVCSLIIDGGSCTNVASSLLVEKLGLATTKHPTPYKLQWLNDGGELKVTKQ 602

Query: 304  TLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKTTLIP 363
              V+F+IGKY D+V+CDVV MH G LLLGRPWQFDRRV++DGY NRYSF H GR  TL P
Sbjct: 603  ARVAFSIGKYQDEVVCDVVPMHAGHLLLGRPWQFDRRVVHDGYTNRYSFKHLGRNVTLAP 662

Query: 364  LSPKNVFIDHCKLEKKRQEVDAKAEIEKESSEKKSLREKQESNTQPREKKERKAKS--VS 423
            L+PK V  D  K+++  +    K + +K   +KK   ++ E  T+  ++KE++ ++   S
Sbjct: 663  LTPKQVHEDQLKMKQSIEREKEKEKNKKSEKKKKEKNDESEIKTRVTKEKEQECENEKTS 722

Query: 424  LYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEHLFSEEMPSSL 483
            ++ R  E R ++L+ Q I V M K   + TN L  +LP+  V LLQEF  +F EE+P+ L
Sbjct: 723  VFARKREIRKLMLARQPIFVPMYKECLFETNELENTLPTPIVSLLQEFGDIFPEEVPNGL 782

Query: 484  PPLKGLNTRLT-----------SFLARPFQTDQLI---------GLIQRRLK-------- 543
            PP++G+  ++            ++ + P +T +L          G I+  L         
Sbjct: 783  PPIRGIEHQIDFVPGAAIPNRPAYRSNPEETKELEKQVAELMEKGYIRESLSPCAVPVLL 842

Query: 544  --RYKG--------KAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHI 603
              +  G        +AINKITIKYRHPIPRLD+MLDEL G  LF+KIDLKSGYHQIRM  
Sbjct: 843  VPKKDGSWRMCVDYRAINKITIKYRHPIPRLDNMLDELSGAQLFSKIDLKSGYHQIRMRE 902

Query: 604  GDEWETAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLVSSNGVEVDEEKV--KA 663
            GDEW+TAFKTKYGLYEWLVMPFGLTNAPSTFMRLMN+VLR ++     V  D+  V  K+
Sbjct: 903  GDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNYVLRSFIGRFCVVYFDDILVYSKS 962

Query: 664  IKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKKNVSFIWEKDQELAFNTL 723
            ++D         ++    +    R   K F      L  ++KKN  F+W  +QE +FN L
Sbjct: 963  LED--------HIQHLRAVLEVLR---KEFCCCP--LTGIIKKNSPFVWTDEQENSFNKL 1022

Query: 724  KEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDK 783
            KE L++APL +LP+F  TFEIECDASG+GIGA LMQ+ RP+ +FSEKL GA+L YPTYDK
Sbjct: 1023 KECLTNAPLLSLPDFNKTFEIECDASGIGIGAALMQDGRPIAYFSEKLNGATLNYPTYDK 1082

Query: 784  ELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYK 843
            ELYALVRAL+TWQHYLWPKEF+IH+DHE+LK+L+ Q KLN+RHAKW+E++E+F YVIKYK
Sbjct: 1083 ELYALVRALETWQHYLWPKEFVIHSDHEALKNLKGQTKLNKRHAKWVEYLESFLYVIKYK 1142

Query: 844  QGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLL 903
            +GKEN+VADALSRRY L+N ++++LLGFE +KDLY+ D  F    ESC  G   + Y   
Sbjct: 1143 KGKENVVADALSRRYALVNLMDSKLLGFEFLKDLYKSDADFGEIYESCSHGA-GEKYFQH 1202

Query: 904  DGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVC 963
            +G+LFR+GKLC+P  S+R +LV EAH GGLM H G++KT  +L EHF+ PKM+ DV + C
Sbjct: 1203 EGYLFREGKLCVPQSSVRNVLVEEAHSGGLMGHFGIAKTLAILHEHFYWPKMKRDVIRKC 1262

Query: 964  GRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKM 1023
             RCI CK+AKSR++PHGLY+PLP+P+ PW+DISMDFVLGLPRT++G DSIFVVVDRFSKM
Sbjct: 1263 DRCITCKKAKSRIKPHGLYTPLPIPDAPWVDISMDFVLGLPRTKRGRDSIFVVVDRFSKM 1322

Query: 1024 AHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYS 1083
            AHFIPC+KTDDA ++A+LFF+EVVRLHGIP++IVSDRD KFLSHFWR LWGKLGTKL++ 
Sbjct: 1323 AHFIPCNKTDDATNVANLFFKEVVRLHGIPRTIVSDRDTKFLSHFWRTLWGKLGTKLLFL 1382

Query: 1084 TTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIV 1143
            TTCHPQTDGQTEVVNR ++ +LRAI+ KNLK WEDCLP +EFAYNR VHS TK +PFE+V
Sbjct: 1383 TTCHPQTDGQTEVVNRVLSTLLRAILKKNLKMWEDCLPHVEFAYNRTVHSATKFSPFEVV 1442

Query: 1144 YGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGRKIV 1190
            YGFNP+TP+DL+ +PS E V+ D   K EFV +LHK VK+ IE++  +      KGRK V
Sbjct: 1443 YGFNPITPLDLISMPSNELVHVDGKKKAEFVKQLHKNVKDNIERRTEQYVRGAKKGRKRV 1502

[Close]
BLAST of CmoCh13G003030 vs. NCBI nr
Match: gi|923748122|ref|XP_013673383.1| (PREDICTED: uncharacterized protein LOC106377669 [Brassica napus])

HSP 1 Score: 975.7 bits (2521), Expect = 7.8e-281
Identity = 470/826 (56.90%), Postives = 596/826 (72.15%), Query Frame = 1 

Query: 426  EARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEHLFSEEMPSSLPPLKGL 485
            + +  +  +  +L+++ K  CY   +  P +P     L+  ++ +F +E+P+ LPP++G+
Sbjct: 130  DMQKAMTQSGQVLLMIFKEGCY-AGLEAPEVPDVVQDLMGRYKDVFPDEIPAGLPPVRGI 189

Query: 486  NTRL-----------TSFLARPFQTDQLIGLIQRRLKR---------------------- 545
              ++            ++   P +  +L   +Q  + +                      
Sbjct: 190  EHQIDLVPGAPLPNRAAYRVNPEEAKELERQVQDLMDKGYIRESLSPCAVPVLLVPKKDG 249

Query: 546  -----YKGKAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWET 605
                    +AIN ITIKYR+PIPRLDDMLDEL G  +F+KIDL+SGYHQ+RM  GDEW+T
Sbjct: 250  TWRMCVDCRAINNITIKYRYPIPRLDDMLDELSGSVVFSKIDLRSGYHQVRMKEGDEWKT 309

Query: 606  AFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYL---VSSNGVEVDEEKVKAIKDWP 665
            AFKTK GLYEWLVMPFGLTNAPSTFMRLMN VLR Y+   VSS G++VDEEK+KAI+DWP
Sbjct: 310  AFKTKQGLYEWLVMPFGLTNAPSTFMRLMNEVLRPYIGFVVSSQGLKVDEEKIKAIQDWP 369

Query: 666  TPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKKNVSFIWEKDQELAFNTLKEKLS 725
            TP  +   RSFHGLASFYRRF+K+FSTIA+ +  ++KKNV+F W   QE +FN LK  L+
Sbjct: 370  TPTTIGHTRSFHGLASFYRRFVKDFSTIAAPMTSVIKKNVTFAWGPAQEESFNRLKYSLT 429

Query: 726  SAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKELYAL 785
             AP+  LPNF+  FEIECDASG GIGAVL Q  RP+ FFSEKL+GA+L YPTYDKELYAL
Sbjct: 430  HAPVLTLPNFDKPFEIECDASGTGIGAVLTQGGRPVAFFSEKLSGAALNYPTYDKELYAL 489

Query: 786  VRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYKQGKEN 845
            VR+L+TW+HYL  KEFIIHTDHE+LKHLR Q  L +RHA+WLEF+ETFPYVIKYK+GK+N
Sbjct: 490  VRSLETWRHYLLSKEFIIHTDHETLKHLRGQTTLKKRHARWLEFVETFPYVIKYKKGKDN 549

Query: 846  IVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLF 905
            IVADALSRR+ L+ T+ A+++GFE +K  Y+ D  F+    +  KG +   Y   DGFLF
Sbjct: 550  IVADALSRRHTLITTMEAKIMGFEQLKMSYETDPDFSELYSNTAKGAMGPFYQQ-DGFLF 609

Query: 906  RKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIA 965
            ++ +LCIP  S+R+LL REAHGGGLM H G  KT  +LS+HF+ P+MR  V  +C +C  
Sbjct: 610  KEKRLCIPHGSMRDLLTREAHGGGLMGHFGRDKTLSVLSDHFYWPRMRRYVESLCAKCTV 669

Query: 966  CKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIP 1025
            C + KSR  P+GL+ PLP+P  PW+D+SMDFVLGLP+     DSIFVVVDRFSKMAHFIP
Sbjct: 670  CLKTKSRSHPYGLHMPLPIPIAPWVDLSMDFVLGLPKIEHK-DSIFVVVDRFSKMAHFIP 729

Query: 1026 CHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHP 1085
            C KT+DA   ADLFF+EVVRLHG+P++IVSDRD KFLSHFWR LW KLGTKL++STTCHP
Sbjct: 730  CSKTNDASQTADLFFKEVVRLHGVPRTIVSDRDRKFLSHFWRTLWKKLGTKLLFSTTCHP 789

Query: 1086 QTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP 1145
            QTDGQTEVVNRT++ +LRA + KNLK W   LPFIEFAYN   HS    +PFEIVYGF P
Sbjct: 790  QTDGQTEVVNRTLSQLLRATVGKNLKNWLSLLPFIEFAYNHARHSINNLSPFEIVYGFRP 849

Query: 1146 LTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGRKIVIFKPG 1205
             TP+DL  +P    V+   + K EFV  +H+QVKE +EK+  +   ++NKG   VIF+PG
Sbjct: 850  ETPMDLAALPPAMQVSQSGDKKAEFVKNMHRQVKETLEKKAERNRIKLNKGSTEVIFQPG 909

Query: 1206 DWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGK 1211
            DWVW+H R ERFP +RKSKL PRGDGPF+VL+RINDNAY+++LP +
Sbjct: 910  DWVWLHMRPERFPEERKSKLAPRGDGPFRVLDRINDNAYRLELPDR 952

[Close]
BLAST of CmoCh13G003030 vs. NCBI nr
Match: gi|1012366710|gb|KYP77891.1| (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 963.4 bits (2489), Expect = 4.0e-277
Identity = 451/646 (69.81%), Postives = 541/646 (83.75%), Query Frame = 1 

Query: 603  YLVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASLLNELVKK 662
            ++VSS GV+VDEEK++AI++WPTPKNVSEVRSFHGLASFYRRF+K+FST+A+ LNE+VKK
Sbjct: 150  FVVSSKGVQVDEEKIRAIQEWPTPKNVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIVKK 209

Query: 663  NVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASGVGIGAVLMQNQRPLMF 722
            +V F W + QE AF+ LK KL++AP+ ALPNF  +FEIECDAS VGIGAVLMQ   P+ +
Sbjct: 210  HVGFKWGEKQEKAFSELKHKLTNAPILALPNFAKSFEIECDASNVGIGAVLMQEGHPIAY 269

Query: 723  FSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRH 782
            FSEKL GA+L YPTYDKELYALVRAL+TWQHYL PKEF+IH+DHESLK+L+ Q KLN+RH
Sbjct: 270  FSEKLNGAALNYPTYDKELYALVRALRTWQHYLLPKEFVIHSDHESLKYLKGQGKLNKRH 329

Query: 783  AKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLGFEHIKDLYQHDMFFAP 842
            AKW+EF+E FPYVIK+K+GK N+VADALSRR+ LL+ L  +L G E +KD+Y HD+ FA 
Sbjct: 330  AKWVEFLEQFPYVIKHKKGKGNVVADALSRRHNLLSMLETKLFGLESLKDMYMHDVDFAE 389

Query: 843  FVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDML 902
               +CEK    + Y   +GFLF+  +LC+P CSIRELLV E+H GGLM H GV KT ++L
Sbjct: 390  NFAACEK-FSENGYYRHNGFLFKANRLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEIL 449

Query: 903  SEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRT 962
             EHF+ P M+HDVHK C  CI CK+AKS+++PHGLY+PLPVP+ PWIDISMDFVLGLPRT
Sbjct: 450  QEHFYWPHMKHDVHKFCDHCIVCKKAKSKVKPHGLYTPLPVPDFPWIDISMDFVLGLPRT 509

Query: 963  RKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLS 1022
            + G DSIFVVVDRFSKMAHFIPC K +DA H+ADLFFREVVRLHG+P+SIVSDRD KFLS
Sbjct: 510  KNGKDSIFVVVDRFSKMAHFIPCKKVNDACHVADLFFREVVRLHGLPRSIVSDRDTKFLS 569

Query: 1023 HFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFA 1082
            HFWR LWGKLGTKL++STTCHPQTDGQTEVVNRT+  +LR ++ KN+K WE+ LP +EFA
Sbjct: 570  HFWRTLWGKLGTKLLFSTTCHPQTDGQTEVVNRTLGTLLRTVLKKNIKFWEEHLPHVEFA 629

Query: 1083 YNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPS-KEFVNFDANAKVEFVHKLHKQVKEQI 1142
            YNR VHSTTKC+PFEIVYGFNPLTP+DLLP+P+  EF + DA AK E+V KLH+QVK QI
Sbjct: 630  YNRAVHSTTKCSPFEIVYGFNPLTPLDLLPMPNISEFKHKDAQAKAEYVKKLHEQVKAQI 689

Query: 1143 EKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDN 1202
            EK+      + NKGRK VIF+PGDWVWVH RKERFP QRKSKL PRGDGPFQVLE+INDN
Sbjct: 690  EKKIESYVKQANKGRKKVIFEPGDWVWVHMRKERFPEQRKSKLQPRGDGPFQVLEKINDN 749

Query: 1203 AYKIDLPGKYGVSATFSVVDLSPFDVGDG-LDSRTNPSQEGENDMN 1247
            AYKIDLPG+YGVS++F+V DL+ FD GD  +  R N +QEGEND++
Sbjct: 750  AYKIDLPGEYGVSSSFNVADLTHFDAGDEFIALRKNVAQEGENDVD 794

[Close]
BLAST of CmoCh13G003030 vs. NCBI nr
Match: gi|727521082|ref|XP_010436772.1| (PREDICTED: uncharacterized protein LOC104720585 [Camelina sativa])

HSP 1 Score: 954.1 bits (2465), Expect = 2.4e-274
Identity = 514/1093 (47.03%), Postives = 689/1093 (63.04%), Query Frame = 1 

Query: 17   FSRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDL 76
            + RD+ ++ + L QG ++V++Y++E + LM+ LEL+E  E+L+A+F++GL   IA K ++
Sbjct: 187  YQRDLQKRFRKLSQGTRTVDEYFEEFEKLMNSLELEESSESLIAQFIDGLQERIARKVEI 246

Query: 77   QPYSNIEELLHIAIKIERQIQQRSQRYSSKTFPNSTSTWK-KDSKNIDYKHRNQEINEKP 136
              Y+++ ELLH A+++E+QIQ++    S +    + + W   +++++D   + + +    
Sbjct: 247  SNYNSLHELLHKAVQVEQQIQRKM---SLRNRTRNNTPWNASNNRSMD---KGKIVENDS 306

Query: 137  QAKFEKGESSRTGKEKVEK----SNVRNRDLKCWRCQGVGHYSRDCPNARIMTIKEGEIV 196
            + K +  E+ +T K K  K    S  R RD+ C++CQG GH +R+CPN R+M +      
Sbjct: 307  RFKNKSNEAPKTSKPKPGKFPNTSQSRTRDITCFKCQGRGHMARECPNQRVMIVTPS--- 366

Query: 197  TDDEAHDDINEETDESEEFSEEDPTHISLVTRQALNTHIKEDGLDQRENLFQTRCLVQSV 256
             D E+ D  +E   + E   E   T   LV ++ L+  +      QREN+F TRC +++ 
Sbjct: 367  GDYESQDKQDEYQTDPENDVEYPDTRELLVIQRILSVLVNPKEKVQRENIFHTRCKIKNK 426

Query: 257  PCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVRITQQTLVSFTIGKY 316
             C+++ID GSCTNV S  +V RL L+   HPRPYKL+ LN+  E+ I +Q +VSF++GKY
Sbjct: 427  VCNLIIDGGSCTNVSSKYMVDRLGLQKTKHPRPYKLRLLNNDTELNIAEQVIVSFSVGKY 486

Query: 317  VDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKTTLIPLSPKNVFIDH 376
             D V+CDVV M  G LLLGRPWQFDR   + G  N Y+FTHN  K  L PLSP  V    
Sbjct: 487  QDQVICDVVPMRAGHLLLGRPWQFDRATTHVGRTNHYTFTHNDCKFNLAPLSPSEVH--- 546

Query: 377  CKLEKKRQEVDAKAEIEKESSEKKSLREKQESNTQPREKKERKAKSVSLYVRSSEARNVL 436
                          E++K  +++  +R            K  +AK   L +   E     
Sbjct: 547  --------------ELQKHMNKEVEVRTSNLYLRSIEVCKTMRAKGTVLLMMFKE----- 606

Query: 437  LSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEHLFSEEMPSSLPPLKGLNTRL-- 496
                          C  T      LP++   +L +++ +F EE+P  LPP+ G+  ++  
Sbjct: 607  --------------CLSTGTSELELPAEVQAVLGQYKDVFPEEIPPGLPPICGIEHQIDL 666

Query: 497  ---------TSFLARPFQTDQLIGLIQRRLKR---------------------------Y 556
                      ++   P ++ +L   ++  + +                            
Sbjct: 667  VPGSALPNKPAYRMNPEESKELEKQVRELMDKGYIRESLSPCAVPVLLVPKKDGTWRMCV 726

Query: 557  KGKAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWETAFKTKY 616
              +AIN ITIKYR PIPRLDDMLDEL G  +F+KIDL+SGY+Q+RM  GDEW+TA KTK 
Sbjct: 727  DCRAINNITIKYRDPIPRLDDMLDELSGAIVFSKIDLRSGYNQVRMREGDEWKTALKTKQ 786

Query: 617  GLYEWLVMPFGLTNAPSTFMRLMNHVLREYLVSSNGVEVDEEKVKAIKDWPTPKNVSEVR 676
            GLYEWLVMPFGLTNAPSTFMRLMN VLR ++VS  G++VDEEK+KAI++WPTP ++    
Sbjct: 787  GLYEWLVMPFGLTNAPSTFMRLMNQVLRSFIVSKQGLQVDEEKIKAIREWPTPTSIG--- 846

Query: 677  SFHGLASFYRRFIKNFSTIASLLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLRALPN 736
              HG A       K+F+ +   L +                           AP+ AL +
Sbjct: 847  --HGEAQ-----EKSFNILKERLTQ---------------------------APVLALSD 906

Query: 737  FESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQH 796
            FE  FE+ECDASG+GIGAVL Q +RP+ FFSEKL+G +L YPTYDKELYAL RAL+TWQH
Sbjct: 907  FEVMFEVECDASGLGIGAVLHQMKRPVAFFSEKLSGPTLNYPTYDKELYALGRALETWQH 966

Query: 797  YLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRR 856
            YL  KEFIIHTDHE+LKHL+ Q  L RRHAKWLEFIETFPYVIKYK+GKEN+VADALSRR
Sbjct: 967  YLLSKEFIIHTDHETLKHLKGQTSLKRRHAKWLEFIETFPYVIKYKKGKENVVADALSRR 1026

Query: 857  YVLLNTLNARLLGFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFRKGKLCIPS 916
            + L+ T+ A+++GFEHIK+LY+ D       +   KG   + Y L DGFLFR  +LCIP 
Sbjct: 1027 HALIATMEAKVMGFEHIKELYKDDPELGECYKEYGKGAYQEFY-LQDGFLFRDKRLCIPQ 1086

Query: 917  CSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRLQ 976
             S+REL++ EAHGGGLM H GV KT  ++ EHFF P ++  V + C RCI C +AKSRL 
Sbjct: 1087 GSMRELILTEAHGGGLMGHFGVDKTLAVVMEHFFWPHLKKHVERFCARCIVCHKAKSRLH 1146

Query: 977  PHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKH 1036
            PHGLY PLP+PN PW+DISMDFVLGLP+  K  DSIFVVVD FSKMAHFIPC KT+DA  
Sbjct: 1147 PHGLYLPLPIPNAPWVDISMDFVLGLPKI-KHKDSIFVVVDWFSKMAHFIPCDKTNDATQ 1195

Query: 1037 IADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVV 1067
             A+LFF+EVVRLHGIP++IVSDRD KFLSHFW+ LW KLGTKL++STTCHPQTDGQTEVV
Sbjct: 1207 TANLFFKEVVRLHGIPRTIVSDRDTKFLSHFWKTLWRKLGTKLLFSTTCHPQTDGQTEVV 1195

[Close]
BLAST of CmoCh13G003030 vs. NCBI nr
Match: gi|147800031|emb|CAN74973.1| (hypothetical protein VITISV_001042 [Vitis vinifera])

HSP 1 Score: 948.7 bits (2451), Expect = 1.0e-272
Identity = 485/868 (55.88%), Postives = 589/868 (67.86%), Query Frame = 1 

Query: 465  QEFEHLFSEEMPSSLPPLKGLNTRLT-----------SFLARPFQTDQLIGLIQRRLKR- 524
            QE+E +F  ++PS LPP++G+  ++            ++ + P +T +L   ++  L + 
Sbjct: 472  QEYEDVFPNDVPSGLPPIRGIEXQIDFVSXATIPNRXAYRSNPEETKELQRQVEXLLTKG 531

Query: 525  --------------------------YKGKAINKITIKYRHPIPRLDDMLDELHGCSLFT 584
                                         + IN IT+KYRHPIPRLDDMLDELHG  +FT
Sbjct: 532  HVRESLSPCVVXVXLVXKKDGTWRMCVDXRXINNITVKYRHPIPRLDDMLDELHGSCVFT 591

Query: 585  KIDLKSGYHQIRMHIGDEWETAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLVS 644
            KIDLKSGYHQIRM  GDEW+TAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH LR ++  
Sbjct: 592  KIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRSFISR 651

Query: 645  SNGVEVDEEKVKAIKDWPTPKNVSE-VRSFHGLA-------------------SFYRRFI 704
               V  D+  V +       KN+ E +   H +                    SFYR F+
Sbjct: 652  FVVVYFDDILVYS-------KNLDEYINHLHCVLALCFLVMLLVXKELRWMRKSFYRXFV 711

Query: 705  KNFSTIASLLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLRALPNFESTFEIECDASG 764
            K+FST+A  L E+VKK V F W    + AF  +KE L                       
Sbjct: 712  KDFSTLAVPLTEIVKKFVGFKWGSXXDRAFIXIKEMLC---------------------- 771

Query: 765  VGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDH 824
             GI A+LMQ +RP+ +FSEKL G +L YPTYDKELYALVRAL+TWQHYLWPKEF+IHTDH
Sbjct: 772  -GIRAILMQEKRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDH 831

Query: 825  ESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLG 884
            ESLKHL+ Q KLNRRHAKW+EFIETF YVIKYKQGKENIVADALSRRY L++TLNA+LLG
Sbjct: 832  ESLKHLKGQGKLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLG 891

Query: 885  FEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHG 944
            FE++K+LY +D  FA    +CEK                + +LC+P+ S+RELLVREAHG
Sbjct: 892  FEYVKELYANDDDFASVYGACEKTTF-------------ENRLCVPNSSMRELLVREAHG 951

Query: 945  GGLMAHHGVSKTYDMLSEHFFLPKMRHDVHKVCGRCIACKQAKSRLQPHGLYSPLPVPNG 1004
            GGLM H GV KT D+L EHFF PKM+ DV + C RCI C+QAKSR+ PHGLY+PLPVP+ 
Sbjct: 952  GGLMGHFGVRKTLDVLHEHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSA 1011

Query: 1005 PWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLH 1064
            PW+DISMDFVLGLPR+R G  SIFVVVDRFSKM +FI CHK DDA HIA+LFFRE+VRLH
Sbjct: 1012 PWVDISMDFVLGLPRSRNGRXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFREIVRLH 1071

Query: 1065 GIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIID 1124
            G+P+SIVSDRDVKFLS+FW+VLW KLGTKL++STTCHPQTDGQTEVVNRT++        
Sbjct: 1072 GVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTLSTF------ 1131

Query: 1125 KNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAK 1184
                                VHSTT  +PFEIVYGFNPLT +DLLP+   E  + D   K
Sbjct: 1132 --------------------VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNEMXSLDGEKK 1191

Query: 1185 VEFVHKLHKQVKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLP 1244
            VE V KLH+ V++ IEK+N +  ++ NKG   V+F+PGDWVWVH RKERFPT+R SKL P
Sbjct: 1192 VEMVKKLHESVRKHIEKKNEQYVSKANKGXXQVLFEPGDWVWVHMRKERFPTRRXSKLHP 1251

Query: 1245 RGDGPFQVLERINDNAYKIDLPGKYGVSATFSVVDLSPFDVGDGLDSRTNPSQEGENDMN 1272
            RGDGPFQVLERINDNAYK+D+PG+Y +SATF+V DLSPFDVGD  DS TNP +E  ND N
Sbjct: 1252 RGDGPFQVLERINDNAYKLDIPGEYNISATFNVSDLSPFDVGD--DSXTNPFEEKGNDEN 1268

The following BLAST results are available for this feature:
BLAST of CmoCh13G003030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YI31B_YEAST7.4e-9835.61Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YG31B_YEAST7.4e-9835.61Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
TF27_SCHPO1.3e-8932.21Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF22_SCHPO1.3e-8932.21Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF25_SCHPO1.3e-8932.21Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmoCh13G003030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151UF56_CAJCA2.8e-27769.81Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_049062 PE=4 SV=1[more]
A5BSP7_VITVI7.1e-27355.88Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1[more]
Q9LQH2_ARATH2.4e-26867.18F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1[more]
Q8L7J3_MAIZE5.2e-26865.09Gag-pol polyprotein OS=Zea mays PE=4 SV=1[more]
A4K7M3_ORYSJ5.8e-26763.70Putative polyprotein OS=Oryza sativa subsp. japonica PE=4 SV=1[more]
BLAST of CmoCh13G003030 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.13.4e-1642.71ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmoCh13G003030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823145097|ref|XP_012472412.1|0.0e+0052.93PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii][more]
gi|923748122|ref|XP_013673383.1|7.8e-28156.90PREDICTED: uncharacterized protein LOC106377669 [Brassica napus][more]
gi|1012366710|gb|KYP77891.1|4.0e-27769.81Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan][more]
gi|727521082|ref|XP_010436772.1|2.4e-27447.03PREDICTED: uncharacterized protein LOC104720585 [Camelina sativa][more]
gi|147800031|emb|CAN74973.1|1.0e-27255.88hypothetical protein VITISV_001042 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR001584Integrase_cat-core
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
IPR012337RNaseH-like_sf
IPR021109Peptidase_aspartic_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003030.1CmoCh13G003030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 513..604
score: 8.5
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 951..1060
score: 2.9
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 943..1103
score: 18
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 159..179
score: 1.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 163..179
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 163..179
score: 9.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 163..179
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 153..180
score: 1.3
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 16..68
score: 7.3
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 952..1104
score: 3.5
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 940..1101
score: 4.68
IPR021109Aspartic peptidase domainunknownSSF50630Acid proteasescoord: 240..333
score: 1.6
NoneNo IPR availableunknownCoilCoilcoord: 380..400
scor
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 516..596
score: 1.8
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 516..1255
score: 2.0E
NoneNo IPR availablePANTHERPTHR24559:SF174SUBFAMILY NOT NAMEDcoord: 516..1255
score: 2.0E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 516..799
score: 5.67E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003030Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003030Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003030Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003030Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003030Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003030Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003030Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003030Watermelon (97103) v1cmowmB186
CmoCh13G003030Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003030Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003030Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003030Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003030Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003030Watermelon (97103) v2cmowmbB198
CmoCh13G003030Wax gourdcmowgoB0259