CmoCh13G003000 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L2, putative
LocationCmo_Chr13 : 3259201 .. 3259672 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGTCAGCTGGCTGCTTCTTGGCCACGCCCCCCGCAACTAGATAGGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA

mRNA sequence

ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA

Coding sequence (CDS)

ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA
Homology
[Close]
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-14
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 34  QGEEILDLNSQ-IGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTL 93
           + + ILD   Q +GNCIP   I IGTWVH+IE  PGQ AKL RAAGTFA+ +++  +   
Sbjct: 347 ENKYILDSYYQMVGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQ 406

Query: 94  SLRLVRLPSGVEKLID 109
              +VRLPSGV+KLID
Sbjct: 407 C--IVRLPSGVDKLID 420

[Close]
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1 

Query: 16  RMAIHPKTLFTQRRKVECQGEEIL---DLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAK 75
           R  +HP+ L          GEEI+   D   Q+GN +P + I +GT +H+IE  PGQ  K
Sbjct: 102 RYVLHPRGLMV--------GEEIIAGPDAPLQLGNALPLSKIPLGTGIHNIEVSPGQGGK 161

Query: 76  LARAAGTFAKRM-KEPTHPTLSLRLVRLPSGVEKLI 108
           L RAAG  A+ + KE ++ T     VRLPSG  +L+
Sbjct: 162 LVRAAGGVAQLVAKEGSYVT-----VRLPSGEVRLV 184

[Close]
BLAST of CmoCh13G003000 vs. TrEMBL
Match: B5LYN7_ESCCA (Ribosomal protein L2 (Fragment) OS=Eschscholzia californica GN=rpl2 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-23
Identity = 58/72 (80.56%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILD NSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 47  EILDRNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 106

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 107 VRLPSGVEKLID 114

[Close]
BLAST of CmoCh13G003000 vs. TrEMBL
Match: Q8WCM7_PLAOC (Ribosomal protein L2 (Fragment) OS=Platanus occidentalis GN=rpl2 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-23
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           +ILDLNSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP    L    
Sbjct: 43  DILDLNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQCLE--- 102

Query: 97  VRLPSGVEKLID 109
            RLPSGVEKLID
Sbjct: 103 -RLPSGVEKLID 110

[Close]
BLAST of CmoCh13G003000 vs. TrEMBL
Match: M9WBC2_LIRTU (Ribosomal protein L2 OS=Liriodendron tulipifera GN=rpl2 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLN Q+GNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 404 EILDLNYQVGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 463

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 464 VRLPSGVEKLID 471

[Close]
BLAST of CmoCh13G003000 vs. TrEMBL
Match: Q8WCM8_9MAGN (Ribosomal protein L2 (Fragment) OS=Dicentra sp. Qiu 95026 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILD NSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 45  EILDRNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 104

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKL+D
Sbjct: 105 VRLPSGVEKLMD 112

[Close]
BLAST of CmoCh13G003000 vs. TrEMBL
Match: G9HNT1_PHODC (Ribosomal protein L2 OS=Phoenix dactylifera GN=rpl2 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-22
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GNCIP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP        L
Sbjct: 408 EILDLNSKVGNCIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPAPQC----L 467

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 468 VRLPSGVEKLID 475

[Close]
BLAST of CmoCh13G003000 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 26  TQRRKVECQGEEIL---DLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAK 85
           TQ + +  Q +E +   D+NS IG+ +P   +RIGT +H+IE  PGQ AK+ RAAGT AK
Sbjct: 37  TQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAK 96

Query: 86  RMKEPTHPTLSLRLVRLPSGVEKLID 109
            +KEP        L++LPSG  K I+
Sbjct: 97  ILKEPAKGKC---LIKLPSGDTKWIN 119

[Close]
BLAST of CmoCh13G003000 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 44  QIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRM-KEPTHPTLSLRLVRLPSG 103
           ++GN +P TD+ +GT +H+IE   G+  +LARAAG  AK + KE    TL     +LPSG
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-----KLPSG 182

Query: 104 VEKLI 108
             +LI
Sbjct: 183 EVRLI 182

[Close]
BLAST of CmoCh13G003000 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 44  QIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRM-KEPTHPTLSLRLVRLPSG 103
           ++GN +P TD+ +GT +H+IE   G+  +LARAAG  AK + KE    TL     +LPSG
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-----KLPSG 182

Query: 104 VEKLI 108
             +LI
Sbjct: 183 EVRLI 182

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: gi|197107556|gb|ACH42358.1| (ribosomal protein L2 [Eschscholzia californica])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 58/72 (80.56%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILD NSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 47  EILDRNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 106

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 107 VRLPSGVEKLID 114

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: gi|17933118|gb|AAL48205.1|AF387175_1 (ribosomal protein L2 [Platanus occidentalis])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           +ILDLNSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP    L    
Sbjct: 43  DILDLNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQCLE--- 102

Query: 97  VRLPSGVEKLID 109
            RLPSGVEKLID
Sbjct: 103 -RLPSGVEKLID 110

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: gi|484759968|ref|YP_007905729.1| (ribosomal protein L2 (mitochondrion) [Liriodendron tulipifera])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLN Q+GNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 404 EILDLNYQVGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 463

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 464 VRLPSGVEKLID 471

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: gi|17933116|gb|AAL48204.1|AF387174_1 (ribosomal protein L2 [Dicentra sp. Qiu 95026])

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILD NSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 45  EILDRNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 104

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKL+D
Sbjct: 105 VRLPSGVEKLMD 112

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: gi|372450219|ref|YP_005090371.1| (ribosomal protein L2 (mitochondrion) [Phoenix dactylifera])

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GNCIP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP        L
Sbjct: 408 EILDLNSKVGNCIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPAPQC----L 467

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 468 VRLPSGVEKLID 475

The following BLAST results are available for this feature:
BLAST of CmoCh13G003000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM02_ORYSI1.9e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE... [more]
RM02_ORYSA1.9e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1[more]
RM02_ORYSJ1.9e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ... [more]
RM02_MARPO6.3e-1455.2660S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV... [more]
RK2_CHLAT2.7e-0940.6350S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3... [more]
BLAST of CmoCh13G003000 vs. TrEMBL
Match NameE-valueIdentityDescription
B5LYN7_ESCCA8.8e-2380.56Ribosomal protein L2 (Fragment) OS=Eschscholzia californica GN=rpl2 PE=4 SV=1[more]
Q8WCM7_PLAOC8.8e-2379.17Ribosomal protein L2 (Fragment) OS=Platanus occidentalis GN=rpl2 PE=4 SV=1[more]
M9WBC2_LIRTU1.1e-2279.17Ribosomal protein L2 OS=Liriodendron tulipifera GN=rpl2 PE=4 SV=1[more]
Q8WCM8_9MAGN2.0e-2279.17Ribosomal protein L2 (Fragment) OS=Dicentra sp. Qiu 95026 GN=rpl2 PE=4 SV=1[more]
G9HNT1_PHODC3.3e-2275.00Ribosomal protein L2 OS=Phoenix dactylifera GN=rpl2 PE=4 SV=1[more]
BLAST of CmoCh13G003000 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44065.11.3e-1245.35 Ribosomal protein L2 family[more]
ATCG00830.16.0e-0744.62ATCG00830.1 ribosomal protein L2[more]
ATCG01310.16.0e-0744.62ATCG01310.1 ribosomal protein L2[more]
BLAST of CmoCh13G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|197107556|gb|ACH42358.1|1.3e-2280.56ribosomal protein L2 [Eschscholzia californica][more]
gi|17933118|gb|AAL48205.1|AF387175_11.3e-2279.17ribosomal protein L2 [Platanus occidentalis][more]
gi|484759968|ref|YP_007905729.1|1.6e-2279.17ribosomal protein L2 (mitochondrion) [Liriodendron tulipifera][more]
gi|17933116|gb|AAL48204.1|AF387174_12.8e-2279.17ribosomal protein L2 [Dicentra sp. Qiu 95026][more]
gi|372450219|ref|YP_005090371.1|4.8e-2275.00ribosomal protein L2 (mitochondrion) [Phoenix dactylifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR022669Ribosomal_L2_C
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003000.1CmoCh13G003000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 41..108
score: 3.3
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 45..109
score: 1.32
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 42..108
score: 3.7
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 44..109
score: 7.5
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 43..141
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003000Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003000Watermelon (97103) v1cmowmB186
CmoCh13G003000Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003000Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003000Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003000Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003000Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003000Watermelon (97103) v2cmowmbB198
CmoCh13G003000Wax gourdcmowgoB0259
CmoCh13G003000Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003000Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003000Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003000Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003000Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003000Cucumber (Chinese Long) v2cmocuB188