CmoCh13G002990 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G002990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRib large subunit 2
LocationCmo_Chr13 : 3256434 .. 3257758 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTGTAGAAAGAATTGAATATGACCCTAATCGTTCTTCTCGGGTCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGTGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATTAAAAAGATGTTTCAATTCATGCTACATTGAAGAAGAATGAAGTTTGATTGTTGTAAATTTTGGGTGGGTTACAATTTAGAGTAATTTAGAGTTATTGTATTTTAAGACTTGTTATTTAATTTCGGTTACATTTACATAATGGCTAATTATGGCCATAAAGTAGGAATGTTACAACTTTTGAAATACCTATAGTAGTTTCATTTTTTTAGGCTATATAAAGACATGTATGTTGTATTTGTAAGGCAGACTTGGAAAATATAGTAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACGTGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGTGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTATTGGCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTAGTTGATTCCCTTATCTTATCAAAATGCAAGACGATAGAGGAGTTCGCTCCGTCGCGTAAGATCCTCGAACCTACCACGACCAGCATCCACAGCCTATTTTCGTTCTCTTCCACGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACAGATGGCGGCTTATGTAGTGGTCGACCTTCCTACCAGGATTCCTCCTTGCTCGAAGAGCACCTTTACTAGTAAGGGCGTAGGAAGCAAAAAACTTGTGCTAAGGAGGTTTTCTTCCCTGCCTTCTCCTCTAAAAAAACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTGGCTGGGGCAAAGACGGCTTTCTTTGCTCCACGAATGAGAGAGAAAGTCAGAGGAAAAAATACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTAGGCACACAGGATGAAACGTAAAGCAGCACTTGATTGGCAGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACTAGAGACGGATCTAGCTAGCTTGCCTGCCAAGCCGATAGGCTAA

mRNA sequence

ATGGGCATTGTAGAAAGAATTGAATATGACCCTAATCGTTTCCCAAGGATAGTGGTGGCTGGGGCAAAGACGGCTTTCTTTGCTCCACGAATGAGAGAGAAAGTCAGAGGAAAAAATACGTTCTCTCTTTGCGAGGCACACAGGATGAAACGTAAAGCAGCACTTGATTGGCAGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACTAGAGACGGATCTAGCTAGCTTGCCTGCCAAGCCGATAGGCTAA

Coding sequence (CDS)

ATGGGCATTGTAGAAAGAATTGAATATGACCCTAATCGTTTCCCAAGGATAGTGGTGGCTGGGGCAAAGACGGCTTTCTTTGCTCCACGAATGAGAGAGAAAGTCAGAGGAAAAAATACGTTCTCTCTTTGCGAGGCACACAGGATGAAACGTAAAGCAGCACTTGATTGGCAGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACTAGAGACGGATCTAGCTAGCTTGCCTGCCAAGCCGATAGGCTAA
Homology
[Close]
BLAST of CmoCh13G002990 vs. Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-25
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRR
Sbjct: 191 FPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRR 250

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           Q+T GLVG A H +SK +TD  +LPAKPIG
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIG 280

[Close]
BLAST of CmoCh13G002990 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 55/84 (65.48%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+
Sbjct: 136 FPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQ 195

Query: 74  QETDGLVGGAEHNESKLETDLASL 87
           Q+T  LVG AEHNESKL+ D  SL
Sbjct: 196 QKTLELVGAAEHNESKLKADQGSL 219

[Close]
BLAST of CmoCh13G002990 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 55/84 (65.48%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+
Sbjct: 136 FPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQ 195

Query: 74  QETDGLVGGAEHNESKLETDLASL 87
           Q+T  LVG AEHNESKL+ D  SL
Sbjct: 196 QKTLELVGAAEHNESKLKADQGSL 219

[Close]
BLAST of CmoCh13G002990 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 55/84 (65.48%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+
Sbjct: 136 FPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQ 195

Query: 74  QETDGLVGGAEHNESKLETDLASL 87
           Q+T  LVG AEHNESKL+ D  SL
Sbjct: 196 QKTLELVGAAEHNESKLKADQGSL 219

[Close]
BLAST of CmoCh13G002990 vs. TrEMBL
Match: D5I3E9_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.7e-32
Identity = 75/90 (83.33%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHRMKRKAALDWQSFRR
Sbjct: 190 FPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRR 249

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QETDGLVGGAEHNESK ETD ASLPAKPIG
Sbjct: 250 QETDGLVGGAEHNESKPETDPASLPAKPIG 279

[Close]
BLAST of CmoCh13G002990 vs. TrEMBL
Match: V9PBK5_VACMA (Ribosomal protein L2 OS=Vaccinium macrocarpon GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-28
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTF LCE           AHR+KRKAAL WQSFRR
Sbjct: 193 FPRIAVAGAKPAFFAPRMREKVRGKNTFFLCEIRKWRTHSILWAHRIKRKAALSWQSFRR 252

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QETDGLVG AEHNESK +TD  SLPAKPIG
Sbjct: 253 QETDGLVGAAEHNESKPKTDQGSLPAKPIG 282

[Close]
BLAST of CmoCh13G002990 vs. TrEMBL
Match: D5I399_CITLA (Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.7e-28
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPR+ VAGAK AFFAPRMR+K+RGKNTFSLCE           AHR+KRKAAL W+SFRR
Sbjct: 190 FPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRR 249

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVGGAEHNESK ETD  SLPAKPIG
Sbjct: 250 QETLGLVGGAEHNESKPETDQGSLPAKPIG 279

[Close]
BLAST of CmoCh13G002990 vs. TrEMBL
Match: B9U3M3_CARPA (Ribosomal protein L2 OS=Carica papaya GN=rpl2 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 68/90 (75.56%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRM+EKVRGKNTFSLCE           AHR+KRKAAL WQSFRR
Sbjct: 193 FPRIAVAGAKPAFFAPRMKEKVRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRR 252

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVG AEHNESK +TD  SLPAKPIG
Sbjct: 253 QETLGLVGAAEHNESKPKTDQGSLPAKPIG 282

[Close]
BLAST of CmoCh13G002990 vs. TrEMBL
Match: Q8WCM5_9DIPS (Ribosomal protein L2 (Fragment) OS=Lonicera sp. Palmer 679 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 68/90 (75.56%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRR
Sbjct: 135 FPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWAHRIKRKAALSWQSFRR 194

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVG AEHNESK +T+  SLPAKPIG
Sbjct: 195 QETLGLVGAAEHNESKPKTNQGSLPAKPIG 224

[Close]
BLAST of CmoCh13G002990 vs. TAIR10
Match: AT2G07715.1 (AT2G07715.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRR
Sbjct: 191 FPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRR 250

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           Q+T GLVG A H +SK +TD  +LPAKPIG
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIG 280

[Close]
BLAST of CmoCh13G002990 vs. TAIR10
Match: ATMG00560.1 (ATMG00560.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRR
Sbjct: 191 FPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRR 250

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           Q+T GLVG A H +SK +TD  +LPAKPIG
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIG 280

[Close]
BLAST of CmoCh13G002990 vs. NCBI nr
Match: gi|295311698|ref|YP_003587363.1| (ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 75/90 (83.33%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHRMKRKAALDWQSFRR
Sbjct: 190 FPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRR 249

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QETDGLVGGAEHNESK ETD ASLPAKPIG
Sbjct: 250 QETDGLVGGAEHNESKPETDPASLPAKPIG 279

[Close]
BLAST of CmoCh13G002990 vs. NCBI nr
Match: gi|576303572|ref|YP_008999589.1| (ribosomal protein L2 (mitochondrion) [Vaccinium macrocarpon])

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-28
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTF LCE           AHR+KRKAAL WQSFRR
Sbjct: 193 FPRIAVAGAKPAFFAPRMREKVRGKNTFFLCEIRKWRTHSILWAHRIKRKAALSWQSFRR 252

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QETDGLVG AEHNESK +TD  SLPAKPIG
Sbjct: 253 QETDGLVGAAEHNESKPKTDQGSLPAKPIG 282

[Close]
BLAST of CmoCh13G002990 vs. NCBI nr
Match: gi|295311655|ref|YP_003587229.1| (ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPR+ VAGAK AFFAPRMR+K+RGKNTFSLCE           AHR+KRKAAL W+SFRR
Sbjct: 190 FPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRR 249

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVGGAEHNESK ETD  SLPAKPIG
Sbjct: 250 QETLGLVGGAEHNESKPETDQGSLPAKPIG 279

[Close]
BLAST of CmoCh13G002990 vs. NCBI nr
Match: gi|224020971|ref|YP_002608204.1| (ribosomal protein L2 [Carica papaya])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 68/90 (75.56%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRM+EKVRGKNTFSLCE           AHR+KRKAAL WQSFRR
Sbjct: 193 FPRIAVAGAKPAFFAPRMKEKVRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRR 252

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVG AEHNESK +TD  SLPAKPIG
Sbjct: 253 QETLGLVGAAEHNESKPKTDQGSLPAKPIG 282

[Close]
BLAST of CmoCh13G002990 vs. NCBI nr
Match: gi|17933131|gb|AAL48207.1|AF387186_1 (ribosomal protein L2 [Lonicera sp. Palmer 679])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27
Identity = 68/90 (75.56%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 14  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRR 73
           FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRR
Sbjct: 135 FPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWAHRIKRKAALSWQSFRR 194

Query: 74  QETDGLVGGAEHNESKLETDLASLPAKPIG 93
           QET GLVG AEHNESK +T+  SLPAKPIG
Sbjct: 195 QETLGLVGAAEHNESKPKTNQGSLPAKPIG 224

The following BLAST results are available for this feature:
BLAST of CmoCh13G002990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM02_ARATH3.9e-2566.6760S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=... [more]
RM02_ORYSA1.7e-2065.4860S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1[more]
RM02_ORYSI1.7e-2065.4860S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE... [more]
RM02_ORYSJ1.7e-2065.4860S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ... [more]
BLAST of CmoCh13G002990 vs. TrEMBL
Match NameE-valueIdentityDescription
D5I3E9_CUCPE8.7e-3283.33Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1[more]
V9PBK5_VACMA2.0e-2876.67Ribosomal protein L2 OS=Vaccinium macrocarpon GN=rpl2 PE=4 SV=1[more]
D5I399_CITLA7.7e-2874.44Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1[more]
B9U3M3_CARPA1.3e-2775.56Ribosomal protein L2 OS=Carica papaya GN=rpl2 PE=4 SV=1[more]
Q8WCM5_9DIPS2.2e-2775.56Ribosomal protein L2 (Fragment) OS=Lonicera sp. Palmer 679 GN=rpl2 PE=4 SV=1[more]
BLAST of CmoCh13G002990 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07715.12.2e-2666.67 Nucleic acid-binding, OB-fold-like protein[more]
ATMG00560.12.2e-2666.67ATMG00560.1 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CmoCh13G002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|295311698|ref|YP_003587363.1|1.3e-3183.33ribosomal protein L2 [Cucurbita pepo][more]
gi|576303572|ref|YP_008999589.1|2.9e-2876.67ribosomal protein L2 (mitochondrion) [Vaccinium macrocarpon][more]
gi|295311655|ref|YP_003587229.1|1.1e-2774.44ribosomal protein L2 [Citrullus lanatus][more]
gi|224020971|ref|YP_002608204.1|1.9e-2775.56ribosomal protein L2 [Carica papaya][more]
gi|17933131|gb|AAL48207.1|AF387186_13.2e-2775.56ribosomal protein L2 [Lonicera sp. Palmer 679][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002990.1CmoCh13G002990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 2..17
score: 4.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G002990Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G002990Cucumber (Gy14) v1cgycmoB0594
CmoCh13G002990Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G002990Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G002990Wild cucumber (PI 183967)cmocpiB192
CmoCh13G002990Cucumber (Chinese Long) v2cmocuB188
CmoCh13G002990Watermelon (Charleston Gray)cmowcgB179
CmoCh13G002990Watermelon (97103) v1cmowmB186
CmoCh13G002990Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G002990Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G002990Cucumber (Gy14) v2cgybcmoB057
CmoCh13G002990Melon (DHL92) v3.6.1cmomedB203
CmoCh13G002990Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G002990Watermelon (97103) v2cmowmbB198
CmoCh13G002990Wax gourdcmowgoB0259