CmoCh13G002980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G002980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem II protein D1
LocationCmo_Chr13 : 3229860 .. 3231853 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATGCTACAAAATCGAGACACTAGTTCCTATTAAGACTCCTTGCTTGGATCATTGGCTAAAAGCGCTATTTTGTAATGTCTTAGGGCATCCCATTAGGAAGCCGACCTGGATCGATTCGTCTTTTCTATTATTGATTGATTGTATATCCGGAAATCTTTCTCATTATTACAGAGGATCTTCAAACAAAAAGAATTTGTATCGAGTCCAGTATATACTTTCACTTTCTTGGCTTCGAACTTTGGCTCGTAACACAACAGTACTGTACGCCTTCTTTTAAAAAGGGGAAATTCACAATTAGTGGAAGAATTATATACGGAGCAAGAAGAGGTTCTTTCTTTGATCTTCCCAAGAGCTTCTTTTCTTTACAGAGGGGATATAGGGGGAAAATGTGGGATTTGGCTATTATTTGCATCAACGATTTAGCCAATAATGAATGATTGGTTCTGACACCATCTAAATGGAAATTGGACTTAATCAATGCATATACCAAAATCAATGAATTTCTATACTGTTCATTTGGTAAGAGTTGCTGAATATTCCACTTTCTTAGTTAGAATCCTACCTGGGGAAGTAACTGCGGTTTAGATGTATACATAGGGAAGTGTGCAATGAAAAATGCAAGCACGGTTCGGGGAGGGCCTTTTTTGACTTAGTTTTGAATAAGTTATCTACTCCATCCAACTAGTCCGGGTTCGAGTCCCGGGCAACCCATTAAAAGAAAGCAGAGGAGGAATATCTATTTATATTTCTCGATGTTGATATTGGTTGACATGGGTATATAAGTCATCTTATACTCTGGGAATAATAAGCCTTTAATTTTCTATTTCGAGAGAATGAATGTGCTTGGGAGGCCCTGATGATTCATGATGAAATAAACCAAGATTTGACCATGACTGCAAGAGAGACGTGAAAGCCTATGGGGTCCTTTCTGTAACTGGATAACCCGAACTGAAACCCGGCTAACCATTGGATGGTTTGGTGTTTTGATAATCCCTACCTTATTGACCGCAACTTACGTATGATTATTGCCTTCATTGCTGCTCGGAGATATTGATGGTATTCGTGAACCTCTTTCTGGATCTCTACTTTCGGGGGACGGAAACAATATTTTTTCTGGTGCCATTATCCATACTTCCTTCTGGTGCCATTATCCCTACTTCCTTCTGCAGCTATTGGGTTGCACTTTGACCCAATTTGAGAAGCTGCTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTTGTTCTACACTGATGACTTGGTGTAGCATCTTACATGGATGGAGGGAGAGTGGGAATTGAGCTTCCGTATGGGCGTCCTTGGATTGTTGTTGCATATTCCGCTCCTGTTGTAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACAGTATGCCTGACGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCATTACAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTCTAGCTAGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTATCTAGTTTGATCAAGGAAACCACAGAGAATGTATCCGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCATCGTAGCTCCCTTTTCATGGTTATTTTGGCCGATTGATCTTCCATCCAATATGCTAGTTTCAACAACTCTCATTCTTTACACTTCTTCCTAGCTGCTTGGCCTCTAGTAGGTACCTGGTTCACTAAGGTATTAGCACTATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTATAGCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTTAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG

mRNA sequence

ATGCTATGCTACAAAATCGAGACACTAGTTCCTATTAAGACTCCTTGCTTGGATCATTGGCTAAAAGCGCTATTTTGTAATGTCTTAGGGCATCCCATTAGGAAGCCGACCTGGATCGATTCGTCTTTTCTATTATTGATTGATTGTATATCCGGAAATCTTTCTCATTATTACAGAGGATCTTCAAACAAAAAGAATTTTATATACTTTCACTTTCTTGGCTTCGAACTTTGGCTCGTAACACAACAGTACTGTACGCCTTCTTTTAAAAAGGGGAAATTCACAATTAGTGGAAGAATTATATACGGAGCAAGAAGAGCATCTTACATGGATGGAGGGAGAGTGGGAATTGAGCTTCCGTATGGGCGTCCTTGGATTGTTGTTGCATATTCCGCTCCTGTTGTAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACAGTATGCCTGACGGAATCTCTGGTACTTTCAACTTCATGATTGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTCTAGCTAGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTATCTAATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG

Coding sequence (CDS)

ATGCTATGCTACAAAATCGAGACACTAGTTCCTATTAAGACTCCTTGCTTGGATCATTGGCTAAAAGCGCTATTTTGTAATGTCTTAGGGCATCCCATTAGGAAGCCGACCTGGATCGATTCGTCTTTTCTATTATTGATTGATTGTATATCCGGAAATCTTTCTCATTATTACAGAGGATCTTCAAACAAAAAGAATTTTATATACTTTCACTTTCTTGGCTTCGAACTTTGGCTCGTAACACAACAGTACTGTACGCCTTCTTTTAAAAAGGGGAAATTCACAATTAGTGGAAGAATTATATACGGAGCAAGAAGAGCATCTTACATGGATGGAGGGAGAGTGGGAATTGAGCTTCCGTATGGGCGTCCTTGGATTGTTGTTGCATATTCCGCTCCTGTTGTAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACAGTATGCCTGACGGAATCTCTGGTACTTTCAACTTCATGATTGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTCTAGCTAGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTATCTAATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG
Homology
[Close]
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match: PSBA_VICFA (Photosystem II protein D1 OS=Vicia faba GN=psbA PE=3 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 57/66 (86.36%), Postives = 58/66 (87.88%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWIVVAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match: PSBA_CITSI (Photosystem II protein D1 OS=Citrus sinensis GN=psbA PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match: PSBA_POPDE (Photosystem II protein D1 OS=Populus deltoides GN=psbA PE=3 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match: PSBA_AGRST (Photosystem II protein D1 OS=Agrostis stolonifera GN=psbA PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match: PSBA_AETGR (Photosystem II protein D1 OS=Aethionema grandiflorum GN=psbA PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. TrEMBL
Match: A0A0D2MBZ4_GOSRA (Maturase K OS=Gossypium raimondii GN=B456_002G165800 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 84/179 (46.93%), Postives = 93/179 (51.96%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYS  +V AT  FLIYPI +GSFSD MP GISGTF FMI   AEHNILMHPFHM
Sbjct: 356 RPWIAVAYSTLIVTATTVFLIYPISRGSFSDGMPLGISGTFKFMIVFQAEHNILMHPFHM 415

Query: 183 LGLASV----------------LAWLPIQRYAWF---------------LGNFYLIL--- 235
           LG+ASV                L W  I +YA F               +G ++ +L   
Sbjct: 416 LGVASVFGSSHSVLCMVPCCSWLFWSLIFQYASFNNSRSLHFFLAAWPRVGIWFTVLGIS 475

[Close]
BLAST of CmoCh13G002980 vs. TrEMBL
Match: D4HMZ9_9ASPA (Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 131 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 190

Query: 183 ASV 186
           A V
Sbjct: 191 AGV 193

[Close]
BLAST of CmoCh13G002980 vs. TrEMBL
Match: D4HN00_9ASPA (Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 129 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 188

Query: 183 ASV 186
           A V
Sbjct: 189 AGV 191

[Close]
BLAST of CmoCh13G002980 vs. TrEMBL
Match: D5ME02_9ASPA (Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 129 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 188

Query: 183 ASV 186
           A V
Sbjct: 189 AGV 191

[Close]
BLAST of CmoCh13G002980 vs. TrEMBL
Match: D5MDZ7_9ASPA (Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 131 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 190

Query: 183 ASV 186
           A V
Sbjct: 191 AGV 193

[Close]
BLAST of CmoCh13G002980 vs. TAIR10
Match: ATCG00020.1 (ATCG00020.1 photosystem II reaction center protein A)

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-25
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMI   AEHNILMHPFHM
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 183 LGLASV 186
           LG+A V
Sbjct: 200 LGVAGV 205

[Close]
BLAST of CmoCh13G002980 vs. TAIR10
Match: ATCG00040.1 (ATCG00040.1 maturase K)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1 

Query: 5   KIETLVPIKTPCLDHWLKALFCNVLGHPIRKPTWIDSS---FLLLIDCISGNLSHYYRGS 64
           K+++ +PI +  +    K  FCNVLGHPI K TW DSS    L     I  N+SHYY GS
Sbjct: 382 KLDSKIPISS-IIGSLAKDKFCNVLGHPISKATWTDSSDSDILNRFVRICRNISHYYSGS 441

Query: 65  SNKKNFIYFHFL 74
           S KKN     ++
Sbjct: 442 SKKKNLYRIKYI 452

[Close]
BLAST of CmoCh13G002980 vs. NCBI nr
Match: gi|763747788|gb|KJB15227.1| (hypothetical protein B456_002G165800 [Gossypium raimondii])

HSP 1 Score: 129.8 bits (325), Expect = 6.3e-27
Identity = 84/179 (46.93%), Postives = 93/179 (51.96%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMI---AEHNILMHPFHM 182
           RPWI VAYS  +V AT  FLIYPI +GSFSD MP GISGTF FMI   AEHNILMHPFHM
Sbjct: 356 RPWIAVAYSTLIVTATTVFLIYPISRGSFSDGMPLGISGTFKFMIVFQAEHNILMHPFHM 415

Query: 183 LGLASV----------------LAWLPIQRYAWF---------------LGNFYLIL--- 235
           LG+ASV                L W  I +YA F               +G ++ +L   
Sbjct: 416 LGVASVFGSSHSVLCMVPCCSWLFWSLIFQYASFNNSRSLHFFLAAWPRVGIWFTVLGIS 475

[Close]
BLAST of CmoCh13G002980 vs. NCBI nr
Match: gi|240152507|gb|ACS45322.1| (photosystem II protein D1 [Hexalectris spicata])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 131 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 190

Query: 183 ASV 186
           A V
Sbjct: 191 AGV 193

[Close]
BLAST of CmoCh13G002980 vs. NCBI nr
Match: gi|240152503|gb|ACS45320.1| (photosystem II protein D1 [Hexalectris spicata])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 129 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 188

Query: 183 ASV 186
           A V
Sbjct: 189 AGV 191

[Close]
BLAST of CmoCh13G002980 vs. NCBI nr
Match: gi|240152501|gb|ACS45319.1| (photosystem II protein D1 [Hexalectris spicata])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 129 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 188

Query: 183 ASV 186
           A V
Sbjct: 189 AGV 191

[Close]
BLAST of CmoCh13G002980 vs. NCBI nr
Match: gi|240152495|gb|ACS45316.1| (photosystem II protein D1 [Hexalectris spicata])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 123 RPWIVVAYSAPVVAATAGFLIYPIGQGSFSDSMPDGISGTFNFMIAEHNILMHPFHMLGL 182
           RPWI VAYSAPV AATA FLIYPIGQGSFSD MP GISGTFNFMIAEHNILMHPFHMLG+
Sbjct: 131 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDDMPLGISGTFNFMIAEHNILMHPFHMLGV 190

Query: 183 ASV 186
           A V
Sbjct: 191 AGV 193

The following BLAST results are available for this feature:
BLAST of CmoCh13G002980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBA_VICFA3.8e-2486.36Photosystem II protein D1 OS=Vicia faba GN=psbA PE=3 SV=2[more]
PSBA_CITSI1.1e-2384.85Photosystem II protein D1 OS=Citrus sinensis GN=psbA PE=3 SV=1[more]
PSBA_POPDE1.1e-2384.85Photosystem II protein D1 OS=Populus deltoides GN=psbA PE=3 SV=2[more]
PSBA_AGRST1.1e-2384.85Photosystem II protein D1 OS=Agrostis stolonifera GN=psbA PE=3 SV=1[more]
PSBA_AETGR1.1e-2384.85Photosystem II protein D1 OS=Aethionema grandiflorum GN=psbA PE=3 SV=1[more]
BLAST of CmoCh13G002980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2MBZ4_GOSRA4.4e-2746.93Maturase K OS=Gossypium raimondii GN=B456_002G165800 PE=3 SV=1[more]
D4HMZ9_9ASPA2.9e-2388.89Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1[more]
D4HN00_9ASPA2.9e-2388.89Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1[more]
D5ME02_9ASPA2.9e-2388.89Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1[more]
D5MDZ7_9ASPA2.9e-2388.89Photosystem II protein D1 (Fragment) OS=Hexalectris spicata GN=psbA PE=4 SV=1[more]
BLAST of CmoCh13G002980 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00020.16.2e-2584.85ATCG00020.1 photosystem II reaction center protein A[more]
ATCG00040.12.1e-0944.44ATCG00040.1 maturase K[more]
BLAST of CmoCh13G002980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763747788|gb|KJB15227.1|6.3e-2746.93hypothetical protein B456_002G165800 [Gossypium raimondii][more]
gi|240152507|gb|ACS45322.1|4.2e-2388.89photosystem II protein D1 [Hexalectris spicata][more]
gi|240152503|gb|ACS45320.1|4.2e-2388.89photosystem II protein D1 [Hexalectris spicata][more]
gi|240152501|gb|ACS45319.1|4.2e-2388.89photosystem II protein D1 [Hexalectris spicata][more]
gi|240152495|gb|ACS45316.1|4.2e-2388.89photosystem II protein D1 [Hexalectris spicata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000484Photo_RC_L/M
IPR024937Domain_X
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009772photosynthetic electron transport in photosystem II
GO:0006397mRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002980.1CmoCh13G002980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3DG3DSA:1.20.85.10coord: 124..186
score: 7.1
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 123..186
score: 3.0
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 123..232
score: 1.44
IPR024937Domain XPFAMPF01348Intron_maturas2coord: 21..71
score: 4.
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 123..185
score: 2.6
NoneNo IPR availablePANTHERPTHR33149:SF5SUBFAMILY NOT NAMEDcoord: 123..185
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G002980Watermelon (97103) v2cmowmbB198
CmoCh13G002980Wax gourdcmowgoB0259
CmoCh13G002980Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G002980Cucumber (Gy14) v1cgycmoB0594
CmoCh13G002980Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G002980Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G002980Wild cucumber (PI 183967)cmocpiB192
CmoCh13G002980Cucumber (Chinese Long) v2cmocuB188
CmoCh13G002980Watermelon (Charleston Gray)cmowcgB179
CmoCh13G002980Watermelon (97103) v1cmowmB186
CmoCh13G002980Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G002980Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G002980Cucumber (Gy14) v2cgybcmoB057
CmoCh13G002980Melon (DHL92) v3.6.1cmomedB203
CmoCh13G002980Cucumber (Chinese Long) v3cmocucB0221