CmoCh13G002920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-directed DNA polymerase homolog
Location	Cmo_Chr13 : 2884994 .. 2892119 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACATAATGGAGAAGTAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGGAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATAGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTAAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTATGTAGGAATATTATCAAGAGATGGAGACTATGATGGAAAGAGCAAATGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAATATTATCAAGAGATGGAGACTATGATGGAAAGAGCAAATGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCGCCATATCTAGAAGACATTTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTAAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGATTGGACACATGAGCAAAGAGTGTGTTAATAAAAAAGTTATGGTGATAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAGCAGCTTCCTTGTAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAACTCCCAAGCTCTTATTTCTTTTACACTTGGAAGATATAACGATGAAGTTCTTTGTGATGTCGTACCAATGCATGCGGGGGACATCTTATTCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTGATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAGAAAAGAAAAGAATATGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAAGAGAGAGATAAGAGTGAAAAAAAAGAGAAAAGTGAGGGGCAAAGGATGAGTGAAAACCAAGAGAGAAAAAAAATGATTTTGAAGAAAAGAGAGAAAATGTGAGTTTAGTTACAAGAATGGGAGAAATGAGGAATATGTTAGCAAGAACCAAAATTTGTACCTATGTGCAAAGGAATGTGCTTAGCAATGGAACCAAAAACTGATGATGCTTTGCTGAGTGCTTTTAAGTCTCTTTTGCAGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTGTTCGGTTCCTGTGATTTTGGTACCCAAGAANNNNNNNNNNTAACCATGCAACTATTATGCAACCTAGAAGGATAGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTAAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTATGTAGGAATATTATCAAGAGATGGAGACTATGATGGAAAGAGCAAATGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCGCCATATCTAGAAGACATTTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTAAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGATTGGACACATGAGCAAAGAGTGTGTTAATAAAAAAGTTATGGTGATAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAGCAGCTTCCTTGTAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAACTCCCAAGCTCTTATTTCTTTTACACTTGGAAGATATAACGATGAAGTTCTTTGTGATGTCGTACCAATGCATGCGGGGGACATCTTATTCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTGATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAGAAAAGAAAAGAATATGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAAGAGAGAGATAAGAGTGAAAAAAAAGAGAAAAGTGAGGGGCAAAGGATGAGTGAAAACCAAGAGAGAAAAAAAATGATTTTGAAGAAAAGAGAGAAAATGTGAGTTTAGTTACAAGAATGGGAGAAATGAGGAATATGTTAGCAAGAACCAAAATTTGTACCTATGTGCAAAGGAATGTGCTTAGCAATGGAACCAAAAACTGATGATGCTTTGCTGAGTGCTTTTAAGTCTCTTTTGCAGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTGTTCGGTTCCTGTGATTTTGGTACCCAAGAAAGATGACACGTGGAGGATGTGTGTTGATTGTCGAGCCATCAACAAGATAACGGTAAAGTATCGACACCCTATTCCTAGATTGGATGACATGTTGGATGAATTATATGGTGCTAATCTGTTTTCAAAAATAGATCTTAAAAGTGGTTATCATCAAATTCGAATGAATGTGGGAGATGAGTGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAGTGGCTCGTTATGTCATTTGGCCTTACAAATGCACCAAGTACTTTTATGAGGCTAATGAATCATGTTTTGAGAGACTATATTGGAAAATTTGTTGTTGTATACTTTGATGATATCCTTGTTTACTCAAAAAGCTTGAATGATCATATTTTGCACGTTAAGAAAATTTTGTTTAAACTTAGAGAAGAGAAAGCTTTATGCCAACTTCAAAAAGTGCAGTTTTTGTCTAGACCAAGTCAACTTCCTAGGGTTCTTAGTTGGAAAGAAGGGAGTACAAGTTGATGAAGAAAAGGTAAAAGCTATTAGAGAATGGCCAACACCCACAAATGCAACCGAGGTAAGATCTTTTCATGGTTTGGCTAGTTTCTATAGGAGATTCATTAAGGATTTCAGTAGCATAGCATCACCATTGAATGAACTTGTTAAAAAGCATGTGAAATTTGAATGGAAGGAAAAACAAGAGAATGCATTCAATGAACTGAAAGATAAATTAACCAATGCACCTTGTCTTGCGTTACCTAACTTTGATAAATCTTTTGAAATTGAATGTGATGCAAGTGGGATAGGCATAGGGGCTGTTTTAATGCAGGAAAAAAGGCCAATCATGTTCTTTAGTGAAAAGCTTAATGGAGCACAACTCAACTATCCGACTTATGACAAAGAGTTATATGCACTTATGAGGGCTTTGCAAGTTTGGCAACATTATTTGTGGCCAAAAGAGTTTGTTATTCATACGGACCATGAAAGTTTGAAGCACCTCAAAAGCCAAACAAAGCTAAATAGGAGACATGCTAAATGGGTGGAATTCATTGAGACGTTTCCTTATGTAATCCATTACAAAAAGGGGAAGGATAATGTGGTCGCAAATGCATTATCAAGAAGGTATGCTTTATTTTCTTCCCTTACTGCAAAAATTCTTGGTTTTAAACACATTATTGAATTGTACAAAGTTTAAAAATTTGAATTTTATGATGTGTATATGCAATGTTTAGAAGGGAAACATGTGCAAGATCATATGGTGTTCGATGATATGCTTTTTAGGAAGGGTAAACTTTGTATCCCTAGATGTTCTATTCGAGAGTTACTTGTGAAGGAAGCTCATGGGGGAGGACTTATGGGACATTTTGAAGAATTTAAAACATATAGCATGTTGTGTGAACATTTTTATTGGTTGAAAATGAGGAAAGATGTGAACAAAGTATGCAAGCAATGTTTTAAATGTAAGGAGGCTAAGTCTAAGACACAACCACCTGGTCTTTACACACCTTTAGATGTTCCTAGTGAACCATGGGTTGACATTAGCATGGATTTTGTTCTAGGATTACCAAAGACTAGAAGACACCATGATAGCATTTTTGTGGTGGTTGATAGGTTTAGTAAGATGGCATATTTCATTCCATGTAACAAAACAGATGATGCTACGAATATAGCTAATCTATTCTTTAAGGAAGTGGTTAGATTGCATGGTATTCCCAAAACCTTTGTTAGTGACAGGGATGTAAAATTTTTAAGCCATTTTTGGAAGGTTTTGTGGGGAAAGTTGGGAACTAAGCTTCTATTTTCTACAACATGTCACCCCCAAACCGATGGACAAACTGAGGTCGTTAATAGAACATTAGGAGCCTTACTTAGGTCACTAATTTCTAAAAATCTTAAGTCTTGGGAAGAGACTCTGCCTTTTGTGGAATTTGCATACAATAGAGAAATACATAGCACCACTTAGTGTTCACCGTTTGAGGTTGTGTATGGATTTAATCCTTTAACTTCTCTAGATTTATTGCCTTTGCCACCTAATATGTTTGCTAATGATGCAGCTTCTTCAAGAGCCGAATACATAAAAAAAATTCATAAAGACATAAAAGAAAGAATTGAAAACAAAAATAAAAAACTAGTCATGCGCAAGAACCAAGGAAGAAAGAAATTGATTTTTAAACAAGGTGACTGGGTTTGGGTCCATCTACGAAAGGAAAGGTTTCCAAGTCAGAGAAAGTCAAAACTTCAACCAAGAGGAGATGGTCCTTTTCAAGTACTAGAGCGGATCGATGACAATGCATACAAGCTAGATCTCAGAGGTGAGTACAATGTAAGTTCAACTTTTAATGTGGCTGATTTGACTCCATTTGATGTAGGGAATGAAGACCTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGAGGATGATATGAATTCAACTGCTAACCCTTTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAAGACTTTTGAGCCCAAAAATCTTTATAGCATTAGCATATCAAATCAAGAAAATAATGGAGTGGCTGATATTGAAAAGTAA

mRNA sequence

ATGTCACATAATGGAGAAGTAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGGAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATAGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTGTTCGGTTCCTGTGATTTTGGTACCCAAGAAAGATGACACGTGGAGGATGTGTGTTGATTGTCGAGCCATCAACAAGATAACGGTAAAGTATCGACACCCTATTCCTAGATTGGATGACATGTTGGATGAATTATATGGTGCTAATCTGTTTTCAAAAATAGATCTTAAAAGTGGTTATCATCAAATTCGAATGAATGTGGGAGATGAGTGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAGTGGCTCGTTATGTCATTTGGCCTTACAAATGCACCAAAGAAGAGAAAGCTTTATGCCAACTTCAAAAAGTGCAGTTTTTGTCTAGACCAAGTCAACTTCCTAGGGTTCTTAGTTGGAAAGAAGGGAGTACAAGTTGATGAAGAAAAGGTAAAAGCTATTAGAGAATGGCCAACACCCACAAATGCAACCGAGGTAAGATCTTTTCATGGTTTGGCTAGTTTCTATAGGAGATTCATTAAGGATTTCAGTAGCATAGCATCACCATTGAATGAACTTGTTAAAAAGCATGTGAAATTTGAATGGAAGGAAAAACAAGAGAATGCATTCAATGAACTGAAAGATAAATTAACCAATGCACCTTGTCTTGCGTTACCTAACTTTGATAAATCTTTTGAAATTGAATGTGATGCAAGTGGGATAGGCATAGGGGCTGTTTTAATGCAGGAAAAAAGGCCAATCATGTTCTTTAGTGAAAAGCTTAATGGAGCACAACTCAACTATCCGACTTATGACAAAGAGTTATATGCACTTATGAGGGCTTTGCAAGTTTGGCAACATTATTTGTGGCCAAAAGAGTTTGTTATTCATACGGACCATGAAAGTTTGAAGCACCTCAAAAGCCAAACAAAGCTAAATAGGAGACATGCTAAATGGGTGGAATTCATTGAGACGTTTCCTTATGTAATCCATTACAAAAAGGGGAAGGATAATGTGGTCGCAAATGCATTATCAAGAAGGTTTAGTAAGATGGCATATTTCATTCCATGTAACAAAACAGATGATGCTACGAATATAGCTAATCTATTCTTTAAGGAAGTGGTTAGATTGCATGGGAATGAAGACCTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGAGGATGATATGAATTCAACTGCTAACCCTTTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAAGACTTTTGAGCCCAAAAATCTTTATAGCATTAGCATATCAAATCAAGAAAATAATGGAGTGGCTGATATTGAAAAGTAA

Coding sequence (CDS)

ATGTCACATAATGGAGAAGTAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGGAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATAGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGAATGGTATAATTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTTTGAAGAAGGTAATTTCATATCTTTGATCACAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGAATTCAATGACATATTTCCACATGAAGATGCATGTATGGGGTTACCCCCTCTAAGAGGGATTGAACACCAAATTGACTTCGTACCTGGGGCAACTCTTCCAAATATGGCTGCCTATAGGACCAATCCCACCGAGACTAAGGAGATTCAGAGACAAGTGGAAGAACTCGTGGATAAAGGATATGTTAGAGAAAGCATGAGTCCTTGTTCGGTTCCTGTGATTTTGGTACCCAAGAAAGATGACACGTGGAGGATGTGTGTTGATTGTCGAGCCATCAACAAGATAACGGTAAAGTATCGACACCCTATTCCTAGATTGGATGACATGTTGGATGAATTATATGGTGCTAATCTGTTTTCAAAAATAGATCTTAAAAGTGGTTATCATCAAATTCGAATGAATGTGGGAGATGAGTGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAGTGGCTCGTTATGTCATTTGGCCTTACAAATGCACCAAAGAAGAGAAAGCTTTATGCCAACTTCAAAAAGTGCAGTTTTTGTCTAGACCAAGTCAACTTCCTAGGGTTCTTAGTTGGAAAGAAGGGAGTACAAGTTGATGAAGAAAAGGTAAAAGCTATTAGAGAATGGCCAACACCCACAAATGCAACCGAGGTAAGATCTTTTCATGGTTTGGCTAGTTTCTATAGGAGATTCATTAAGGATTTCAGTAGCATAGCATCACCATTGAATGAACTTGTTAAAAAGCATGTGAAATTTGAATGGAAGGAAAAACAAGAGAATGCATTCAATGAACTGAAAGATAAATTAACCAATGCACCTTGTCTTGCGTTACCTAACTTTGATAAATCTTTTGAAATTGAATGTGATGCAAGTGGGATAGGCATAGGGGCTGTTTTAATGCAGGAAAAAAGGCCAATCATGTTCTTTAGTGAAAAGCTTAATGGAGCACAACTCAACTATCCGACTTATGACAAAGAGTTATATGCACTTATGAGGGCTTTGCAAGTTTGGCAACATTATTTGTGGCCAAAAGAGTTTGTTATTCATACGGACCATGAAAGTTTGAAGCACCTCAAAAGCCAAACAAAGCTAAATAGGAGACATGCTAAATGGGTGGAATTCATTGAGACGTTTCCTTATGTAATCCATTACAAAAAGGGGAAGGATAATGTGGTCGCAAATGCATTATCAAGAAGGTTTAGTAAGATGGCATATTTCATTCCATGTAACAAAACAGATGATGCTACGAATATAGCTAATCTATTCTTTAAGGAAGTGGTTAGATTGCATGGGAATGAAGACCTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGAGGATGATATGAATTCAACTGCTAACCCTTTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAAGACTTTTGAGCCCAAAAATCTTTATAGCATTAGCATATCAAATCAAGAAAATAATGGAGTGGCTGATATTGAAAAGTAA

Homology

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BLAST of CmoCh13G002920 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-67
Identity = 164/517 (31.72%), Postives = 262/517 (50.68%), Query Frame = 1


Query: 408 QLVEEIAAYDDEYFEEGNFISLITRRVLNVQIKEEKFEDQRENLFHTRCLVKGNPCSLVI 467
           +L+E IA ++  +F+  N I     R  N        E     L H     K   C+L+ 
Sbjct: 121 KLIEGIATHEQSHFQNVNMIPDTMLRQPNKI--SPILESDLYRLEHLNNEEKQRLCALL- 180

Query: 468 DSGSCTNVEFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQ 527
                   +++DI  HE   +        +H I+      LP  + Y       +E++ Q
Sbjct: 181 -------QKYHDIQYHEGDKLTFT--NQTKHTIN--TKHNLPLYSKYSYPQAYEQEVESQ 240

Query: 528 VEELVDKGYVRESMSPCSVPVILVPKKDDT-----WRMCVDCRAINKITVKYRHPIPRLD 587
           +++++++G +R S SP + P+ +VPKK D      +R+ +D R +N+ITV  RHPIP +D
Sbjct: 241 IQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMD 300

Query: 588 DMLDELYGANLFSKIDLKSGYHQIRMNVGDEWKTAFKTKFGLYEWLVMSFGLTNAPKKRK 647
           ++L +L   N F+ IDL  G+HQI M+     KTAF TK G YE+L M FGL NAP   +
Sbjct: 301 EILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQ 360

Query: 648 LYAN-------FKKCSFCLDQVN------------------------------------- 707
              N        K C   LD +                                      
Sbjct: 361 RCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQ 420

Query: 708 ---FLGFLVGKKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPL 767
              FLG ++   G++ + EK++AI+++P PT   E+++F GL  +YR+FI +F+ IA P+
Sbjct: 421 ETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPM 480

Query: 768 NELVKKHVKFEWKEKQ-ENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQ 827
            + +KK++K +    + ++AF +LK  ++  P L +P+F K F +  DAS + +GAVL Q
Sbjct: 481 TKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQ 540

Query: 828 EKRPIMFFSEKLNGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQ 872
           +  P+ + S  LN  ++NY T +KEL A++ A + ++HYL  + F I +DH+ L  L   
Sbjct: 541 DGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRM 600

[Close]

BLAST of CmoCh13G002920 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 245.4 bits (625), Expect = 2.7e-63
Identity = 149/445 (33.48%), Postives = 227/445 (51.01%), Query Frame = 1


Query: 478  NDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGYV 537
            ND+ P       +P    ++H I+  PGA LP +  Y       +EI + V++L+D  ++
Sbjct: 570  NDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFI 629

Query: 538  RESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSKI 597
              S SPCS PV+LVPKKD T+R+CVD R +NK T+    P+PR+D++L  +  A +F+ +
Sbjct: 630  VPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTL 689

Query: 598  DLKSGYHQIRMNVGDEWKTAFKTKFGLYEWLVMSFGLTNAPK--KRKLYANFKKCSFC-- 657
            DL SGYHQI M   D +KTAF T  G YE+ VM FGL NAP    R +   F+   F   
Sbjct: 690  DLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNV 749

Query: 658  -LDQVNFLGFLVGKKGVQVD--------EEKVKAIREWPTPTNATEVRSFH--------- 717
             LD +        +    +D        E  +   ++    +  TE   +          
Sbjct: 750  YLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPL 809

Query: 718  -----------------------GLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQE 777
                                   G+ ++YRRFI + S IA P+   +    K +W EKQ+
Sbjct: 810  QHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQD 869

Query: 778  NAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVL--MQEKRPIM----FFSEKL 837
             A ++LKD L N+P L   N   ++ +  DAS  GIGAVL  +  K  ++    +FS+ L
Sbjct: 870  KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSL 929

Query: 838  NGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVE 872
              AQ NYP  + EL  +++AL  +++ L  K F + TDH SL  L+++ +  RR  +W++
Sbjct: 930  ESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLD 989

[Close]

BLAST of CmoCh13G002920 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-62
Identity = 148/445 (33.26%), Postives = 225/445 (50.56%), Query Frame = 1


Query: 478  NDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGYV 537
            ND+ P       +P    ++H I+  PGA LP +  Y       +EI + V++L+D  ++
Sbjct: 596  NDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFI 655

Query: 538  RESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSKI 597
              S SPCS PV+LVPKKD T+R+CVD R +NK T+    P+PR+D++L  +  A +F+ +
Sbjct: 656  VPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTL 715

Query: 598  DLKSGYHQIRMNVGDEWKTAFKTKFGLYEWLVMSFGLTNAPK--KRKLYANFKKCSFC-- 657
            DL SGYHQI M   D +KTAF T  G YE+ VM FGL NAP    R +   F+   F   
Sbjct: 716  DLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNV 775

Query: 658  -LDQVNFLGFLVGKKGVQVD--------EEKVKAIREWPTPTNATEVRSFH--------- 717
             LD +        +    +D        E  +   ++    +  TE   +          
Sbjct: 776  YLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPL 835

Query: 718  -----------------------GLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQE 777
                                   G+ ++YRRFI + S IA P+   +    K +W EKQ+
Sbjct: 836  QHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQD 895

Query: 778  NAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVL--MQEKRPIM----FFSEKL 837
             A  +LK  L N+P L   N   ++ +  DAS  GIGAVL  +  K  ++    +FS+ L
Sbjct: 896  KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSL 955

Query: 838  NGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVE 872
              AQ NYP  + EL  +++AL  +++ L  K F + TDH SL  L+++ +  RR  +W++
Sbjct: 956  ESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLD 1015

[Close]

BLAST of CmoCh13G002920 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-62
Identity = 143/411 (34.79%), Postives = 219/411 (53.28%), Query Frame = 1


Query: 514 YRTNPTETKEIQRQVEELVDKGYVRESMSPCSVPVILVPKKDDT-----WRMCVDCRAIN 573
           Y    T   E++ QV+E++++G +RES SP + P  +VPKK D      +R+ +D R +N
Sbjct: 212 YPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLN 271

Query: 574 KITVKYRHPIPRLDDMLDELYGANLFSKIDLKSGYHQIRMNVGDEWKTAFKTK------- 633
           +IT+  R+PIP +D++L +L     F+ IDL  G+HQI M+     KTAF TK       
Sbjct: 272 EITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYL 331

Query: 634 ---FGLY---------------------------EWLVMSFGLTNAPKKRKLY------A 693
              FGL                            + ++ S  LT      +L       A
Sbjct: 332 RMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADA 391

Query: 694 NFK----KCSFCLDQVNFLGFLVGKKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFY 753
           N K    KC F   + NFLG +V   G++ +  KVKAI  +P PT   E+R+F GL  +Y
Sbjct: 392 NLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYY 451

Query: 754 RRFIKDFSSIASPLNELVKKHVKFEWKEKQE-NAFNELKDKLTNAPCLALPNFDKSFEIE 813
           R+FI +++ IA P+   +KK  K + ++ +   AF +LK  +   P L LP+F+K F + 
Sbjct: 452 RKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 511

Query: 814 CDASGIGIGAVLMQEKRPIMFFSEKLNGAQLNYPTYDKELYALMRALQVWQHYLWPKEFV 872
            DAS + +GAVL Q   PI F S  LN  +LNY   +KEL A++ A + ++HYL  ++F+
Sbjct: 512 TDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFL 571

[Close]

BLAST of CmoCh13G002920 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-41
Identity = 98/238 (41.18%), Postives = 140/238 (58.82%), Query Frame = 1


Query: 648 KKCSFCLDQVNFLGFLVGKKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKD 707
           +K  F  + V +LGF+V K G + D EKVKAI+E+P P    +VRSF GLAS+YR FIKD
Sbjct: 374 EKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKD 433

Query: 708 FSSIASPLNELVK-----------KHVKFEWKEKQENAFNELKDKLTNAP-CLALPNFDK 767
           F++IA P+ +++K           K +  E+ E Q NAF  L++ L +    L  P+F K
Sbjct: 434 FAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKK 493

Query: 768 SFEIECDASGIGIGAVLMQEKRPIMFFSEKLNGAQLNYPTYDKELYALMRALQVWQHYLW 827
            F++  DAS  GIGAVL QE RPI   S  L   + NY T ++EL A++ AL   Q++L+
Sbjct: 494 PFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLY 553

Query: 828 -PKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFIETFPYVIHYKKGKDNVVANALSRR 873
             +E  I TDH+ L    +    N +  +W  +I+     + YK GK+N VA+ALSR+
Sbjct: 554 GSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 611

[Close]

BLAST of CmoCh13G002920 vs. TrEMBL
Match: Q7XWZ0_ORYSJ (OSJNBb0072N21.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0072N21.12 PE=4 SV=2)

HSP 1 Score: 585.9 bits (1509), Expect = 9.3e-164
Identity = 294/551 (53.36%), Postives = 378/551 (68.60%), Query Frame = 1


Query: 404 DHDSQLVEEIAAYDDEYFEEGNFISLITRRVLNVQIKEEKFEDQRENLFHTRCLVKGNPC 463
           D   Q  E I A   E++E     SL+ +RVL+ Q++  + ++QR  LF T+C++K   C
Sbjct: 397 DAPHQDEEHIGAEAAEHYE-----SLVVQRVLSAQMERAE-QNQRHTLFQTKCVIKERSC 456

Query: 464 SLVIDSGSCTNV------------------------------EFNDIFPHEDACMGLPPL 523
            ++I  GSC N+                              E+ DIF  E    GLPP+
Sbjct: 457 RVIIYGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEYADIFSKE-VPPGLPPI 516

Query: 524 RGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGYVRESMSPCSVPVILVPK 583
           RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+EL+DKGYVRES+SPC+VPV+LVPK
Sbjct: 517 RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 576

Query: 584 KDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSKIDLKSGYHQIRMNVGDE 643
           KD +WRMCVDCRAIN IT++YRHPIPRLDDMLDEL G+ +FSKIDL+SGYHQIRM +GDE
Sbjct: 577 KDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDE 636

Query: 644 -------------W-------KTAFKTKFGLYEWLVMSF--------------------- 703
                        W         A  T   L   ++ +F                     
Sbjct: 637 WKTAFKTKFSLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDGILIYSRSIED 696

Query: 704 ------GLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKGVQVDEEKVKAIREWPTPT 763
                  + +A +  +L+ N +KC+FC D+V+FLG++V  +G++VD+ KV+AI  WP PT
Sbjct: 697 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 756

Query: 764 NATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQENAFNELKDKLTNAP 823
             T+VRSF GLA FYRRF+KDFS+IA+PL+EL K++V F W   Q NAF+ LKDKLT+AP
Sbjct: 757 TITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAP 816

Query: 824 CLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNGAQLNYPTYDKELYALMRA 878
            L LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FSEKL+G  LNY TYDKEL+AL+R 
Sbjct: 817 LLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSLNYSTYDKELFALVRT 876

[Close]

BLAST of CmoCh13G002920 vs. TrEMBL
Match: Q8L7J3_MAIZE (Gag-pol polyprotein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 1.0e-157
Identity = 276/451 (61.20%), Postives = 342/451 (75.83%), Query Frame = 1


Query: 473  TNV--EFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEE 532
            TN+  E++D+FP E    GLPP+RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+E
Sbjct: 685  TNILQEYSDVFPSEIP-EGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQE 744

Query: 533  LVDKGYVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYG 592
            L+DKGYVRES+SPC+VPVILVPKKD TWRMCVDCRAIN IT++YRHPIPRLDDMLDEL G
Sbjct: 745  LLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSG 804

Query: 593  ANLFSKIDLKSGYHQIRMNVGDE-------------WKT--------------------- 652
            A +FSK+DL+SGYHQIRM +GDE             W                       
Sbjct: 805  AIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLR 864

Query: 653  AFKTKFGLYEW---LVMSFGLT----------NAPKKRKLYANFKKCSFCLDQVNFLGFL 712
            AF  KF +  +   L+ S  +           NA +  +L+ N +KC+FC D+V+FLG++
Sbjct: 865  AFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYV 924

Query: 713  VGKKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHV 772
            V  +G++VD+ KV+AI  WP P   T+VRSF GLA FYRRF+KDFS+IA+PLNEL KK V
Sbjct: 925  VTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGV 984

Query: 773  KFEWKEKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFS 832
             F W + QE+AFN LKDKLT+AP L LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FS
Sbjct: 985  HFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFS 1044

Query: 833  EKLNGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAK 875
            EKL+G+ LNY TYDKELYAL+R L+ WQHYLWPKEFVIH+DHESLKH++SQ KLNRRHAK
Sbjct: 1045 EKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAK 1104

[Close]

BLAST of CmoCh13G002920 vs. TrEMBL
Match: Q8S6I8_ORYSJ (Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBb0023M11.5 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 264/449 (58.80%), Postives = 339/449 (75.50%), Query Frame = 1


Query: 476 EFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKG 535
           E+ DIFP E   +GLPP+RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+EL+DKG
Sbjct: 529 EYADIFPKE-VPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKG 588

Query: 536 YVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFS 595
           YVRES+SPC+VPV+LVPKKD +WRMCVDCRAI+ I ++YRHPIPRLDDMLDEL G+ +FS
Sbjct: 589 YVRESLSPCAVPVLLVPKKDGSWRMCVDCRAIDNIIIRYRHPIPRLDDMLDELSGSLVFS 648

Query: 596 KIDLKSGYHQIRMNVGDEWKTAFK----------TKFGLYE------------------- 655
           KIDL+SGYHQIRM +GDEWK AFK            FGL                     
Sbjct: 649 KIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLCAFIGR 708

Query: 656 WLVMSF------------------GLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKG 715
           ++V+ F                   + +A +  +L+ N +KC+FC+D+V+FLG++V  +G
Sbjct: 709 FVVVYFDDILTYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCIDRVSFLGYVVTPQG 768

Query: 716 VQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWK 775
           ++VD+ KV+AI  WP PT  T+VRSF G+A FYRRF+KDFS+IA+PL+EL K++V F W 
Sbjct: 769 IEVDQAKVEAIHSWPVPTTITQVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNVTFTWA 828

Query: 776 EKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNG 835
             Q N F+ LKDKLT+AP   LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FSEKL+G
Sbjct: 829 VAQRNTFDTLKDKLTHAPLFQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSG 888

Query: 836 AQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFI 878
             LNY TYDK+L+AL++ L+ WQHYLWPKEFVI +DHESLKH++SQ KLN RHAKWVEFI
Sbjct: 889 PSLNYSTYDKKLFALVQTLETWQHYLWPKEFVIRSDHESLKHIRSQAKLNHRHAKWVEFI 948

[Close]

BLAST of CmoCh13G002920 vs. TrEMBL
Match: Q339J2_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g20960 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 264/449 (58.80%), Postives = 339/449 (75.50%), Query Frame = 1


Query: 476  EFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKG 535
            E+ DIFP E   +GLPP+RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+EL+DKG
Sbjct: 564  EYADIFPKE-VPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKG 623

Query: 536  YVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFS 595
            YVRES+SPC+VPV+LVPKKD +WRMCVDCRAI+ I ++YRHPIPRLDDMLDEL G+ +FS
Sbjct: 624  YVRESLSPCAVPVLLVPKKDGSWRMCVDCRAIDNIIIRYRHPIPRLDDMLDELSGSLVFS 683

Query: 596  KIDLKSGYHQIRMNVGDEWKTAFK----------TKFGLYE------------------- 655
            KIDL+SGYHQIRM +GDEWK AFK            FGL                     
Sbjct: 684  KIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLCAFIGR 743

Query: 656  WLVMSF------------------GLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKG 715
            ++V+ F                   + +A +  +L+ N +KC+FC+D+V+FLG++V  +G
Sbjct: 744  FVVVYFDDILTYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCIDRVSFLGYVVTPQG 803

Query: 716  VQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWK 775
            ++VD+ KV+AI  WP PT  T+VRSF G+A FYRRF+KDFS+IA+PL+EL K++V F W 
Sbjct: 804  IEVDQAKVEAIHSWPVPTTITQVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNVTFTWA 863

Query: 776  EKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNG 835
              Q N F+ LKDKLT+AP   LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FSEKL+G
Sbjct: 864  VAQRNTFDTLKDKLTHAPLFQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSG 923

Query: 836  AQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFI 878
              LNY TYDK+L+AL++ L+ WQHYLWPKEFVI +DHESLKH++SQ KLN RHAKWVEFI
Sbjct: 924  PSLNYSTYDKKLFALVQTLETWQHYLWPKEFVIRSDHESLKHIRSQAKLNHRHAKWVEFI 983

[Close]

BLAST of CmoCh13G002920 vs. TrEMBL
Match: Q8LM42_ORYSJ (Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNAb0078C13.21 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 264/449 (58.80%), Postives = 339/449 (75.50%), Query Frame = 1


Query: 476  EFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKG 535
            E+ DIFP E   +GLPP+RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+EL+DKG
Sbjct: 622  EYADIFPKE-VPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKG 681

Query: 536  YVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFS 595
            YVRES+SPC+VPV+LVPKKD +WRMCVDCRAI+ I ++YRHPIPRLDDMLDEL G+ +FS
Sbjct: 682  YVRESLSPCAVPVLLVPKKDGSWRMCVDCRAIDNIIIRYRHPIPRLDDMLDELSGSLVFS 741

Query: 596  KIDLKSGYHQIRMNVGDEWKTAFK----------TKFGLYE------------------- 655
            KIDL+SGYHQIRM +GDEWK AFK            FGL                     
Sbjct: 742  KIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLCAFIGR 801

Query: 656  WLVMSF------------------GLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKG 715
            ++V+ F                   + +A +  +L+ N +KC+FC+D+V+FLG++V  +G
Sbjct: 802  FVVVYFDDILTYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCIDRVSFLGYVVTPQG 861

Query: 716  VQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWK 775
            ++VD+ KV+AI  WP PT  T+VRSF G+A FYRRF+KDFS+IA+PL+EL K++V F W 
Sbjct: 862  IEVDQAKVEAIHSWPVPTTITQVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNVTFTWA 921

Query: 776  EKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNG 835
              Q N F+ LKDKLT+AP   LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FSEKL+G
Sbjct: 922  VAQRNTFDTLKDKLTHAPLFQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSG 981

Query: 836  AQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFI 878
              LNY TYDK+L+AL++ L+ WQHYLWPKEFVI +DHESLKH++SQ KLN RHAKWVEFI
Sbjct: 982  PSLNYSTYDKKLFALVQTLETWQHYLWPKEFVIRSDHESLKHIRSQAKLNHRHAKWVEFI 1041

[Close]

BLAST of CmoCh13G002920 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-20
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 639 KKRKLYANFKKCSFCLDQVNFLGF--LVGKKGVQVDEEKVKAIREWPTPTNATEVRSFHG 698
           ++ + YAN KKC+F   Q+ +LG   ++  +GV  D  K++A+  WP P N TE+R F G
Sbjct: 12  EQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLG 71

Query: 699 LASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQENAFNELKDKLTNAPCLALPNFDKS 758
           L  +YRRF+K++  I  PL EL+KK+   +W E    AF  LK  +T  P LALP+    
Sbjct: 72  LTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLP 131

[Close]

BLAST of CmoCh13G002920 vs. NCBI nr
Match: gi|729312287|ref|XP_010530537.1| (PREDICTED: uncharacterized protein LOC104807122 [Tarenaya hassleriana])

HSP 1 Score: 655.2 bits (1689), Expect = 1.8e-184
Identity = 368/744 (49.46%), Postives = 479/744 (64.38%), Query Frame = 1


Query: 170 KRNGIIDSDDECEDHDSQLVEEIAAYDDEYFEEGNFIS--LITRRVLNVQIKEEKFEDQR 229
           + +G I+++ E E+   ++V +    DD+Y E G      L+ RR LN+Q+KEE    QR
Sbjct: 174 RADGEIETESEGEEVTEKMVVDS---DDDYVEYGAARGDLLVARRALNLQVKEEA-SVQR 233

Query: 230 ENLFHTRCLVKGNPCSLVIDSGSCTNVEFNDIFPHEDACMGLPPLRGIEHQIDFVPGATL 289
           EN+F+TR +V+   CS++ID GSCTNV    +       + LP                 
Sbjct: 234 ENIFYTRGIVQNKVCSIIIDGGSCTNVASTLLVEK----LKLP-----------TTSHPK 293

Query: 290 PNMAAYRTNPTETKEIQRQVE-ELVDKGYVRESMS---PYSEAYL------QWERKIEHV 349
           P    +     ETK ++RQV+      GYV E +    P   A++      Q++ +  H 
Sbjct: 294 PYKLQWLNESGETK-VRRQVQIPFTIGGYVDEVLCDVVPMQAAHILLGRPWQFDTRAHHD 353

Query: 350 FDCNTYS-ENKKMRLAIAEFTNHA--GDWYQHLKSERRRKEEDPIETWEELKEAMRKRNG 409
              N YS E K  ++ +   T      D  + LKSE+++     IE  +       + +G
Sbjct: 354 GFTNRYSFEFKGQKIQLTPLTPKEVYEDQVRLLKSEKQKAMTSKIEKGQ-------RADG 413

Query: 410 IIDSDDECEDHDSQLVEEIAAYDDEYFEEGNFISLIT-RRVLNVQIKEEKFEDQRENLFH 469
              S +  +  ++ LV     +  +  +     +L+T +++L +  K+    ++  +  H
Sbjct: 414 ATQSVNPSDISETPLVTASVLFSTKARDLKR--ALVTHQQILVIVYKDVLLTNEAISTLH 473

Query: 470 TRCLVKGNPCSLVIDSGSCTNVEFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAA 529
                      +V+ S      ++ D+FP ED   GLPPLRGIEHQIDFVPGAT+ N  A
Sbjct: 474 -----------VVVSS---VLQDYEDVFP-EDVPDGLPPLRGIEHQIDFVPGATILNKPA 533

Query: 530 YRTNPTETKEIQRQVEELVDKGYVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVK 589
           YRTNP ETKE+QRQV EL+++GYVRESMSPC+VPVILVPKKD +WRMCVDCRA N ITVK
Sbjct: 534 YRTNPEETKELQRQVTELMERGYVRESMSPCAVPVILVPKKDGSWRMCVDCRAFNNITVK 593

Query: 590 YRHPIPRLDDMLDELYGANLFSKIDLKSGYHQIRMNVGDEWKTAFKTKFGLYEWLVMSFG 649
           YRHPIPRLDDMLDEL+G+ +FSKIDLKSGYHQIRM  GDEWKT FKTK GLYEW +  F 
Sbjct: 594 YRHPIPRLDDMLDELHGSTVFSKIDLKSGYHQIRMREGDEWKTVFKTKLGLYEWFIGKFV 653

Query: 650 LT-----------------------NAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKGVQ 709
           +                        +  ++ KLYAN KKCSF  D++ FLGF+V  +G+Q
Sbjct: 654 VVYFDDILVYSRSIEEHVEHLRVVLSVLREEKLYANMKKCSFFSDKLAFLGFVVSAQGIQ 713

Query: 710 VDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEK 769
           VDEEK++AI+ WP+P    EVRSFHGLA FYRRF+K+FS+IA+PL +++KK V F+W   
Sbjct: 714 VDEEKIEAIKSWPSPKTVGEVRSFHGLAGFYRRFVKNFSTIAAPLTQIIKKDVGFQWGAV 773

Query: 770 QENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNGAQ 829
           QE AF  LK KL N+P L LP+F K+FEIECDAS IGIGAVLMQEKRP+ +FSEKL+GAQ
Sbjct: 774 QEEAFQTLKAKLINSPLLTLPDFTKTFEIECDASRIGIGAVLMQEKRPVAYFSEKLSGAQ 833

Query: 830 LNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFIET 875
           L+YPTYDKE+YAL+RALQ WQHYLWPKEFVIHTDHESLKHLK Q KLNRRHAKWVEF+ET
Sbjct: 834 LSYPTYDKEMYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQHKLNRRHAKWVEFLET 873

[Close]

BLAST of CmoCh13G002920 vs. NCBI nr
Match: gi|727559255|ref|XP_010451906.1| (PREDICTED: uncharacterized protein LOC104734098 [Camelina sativa])

HSP 1 Score: 609.4 bits (1570), Expect = 1.1e-170
Identity = 295/427 (69.09%), Postives = 344/427 (80.56%), Query Frame = 1


Query: 476 EFNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKG 535
           E+ND+FP ED  +GLPP+RGIEHQIDFVPGA LPN  AYRTNPTETKE++RQV EL+DKG
Sbjct: 556 EYNDVFP-EDNPIGLPPIRGIEHQIDFVPGAALPNRPAYRTNPTETKELERQVNELMDKG 615

Query: 536 YVRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFS 595
           ++RESMSPC+VPV+LVPKKD +WRMCVDCRAIN ITVKYRHPIPRLDDMLDEL+G+++FS
Sbjct: 616 HIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFS 675

Query: 596 KIDLKSGYHQIRM---------NVGDEWKT----AFKTKFGLY------EWLVMSFGLTN 655
           KIDLKSGYHQIRM         N    +        +   G++      + LV S  L +
Sbjct: 676 KIDLKSGYHQIRMKEVMPFGLTNAPSTFMRLMNHVLRKHIGVFVVVYFDDILVYSKNLED 735

Query: 656 AP----------KKRKLYANFKKCSFCLDQVNFLGFLVGKKGVQVDEEKVKAIREWPTPT 715
                       +K KLYAN+KKC+FC D + FLGF+V   G++VDEEKVKAIR+WP+PT
Sbjct: 736 HVMHLRLVLDLLRKEKLYANYKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIRDWPSPT 795

Query: 716 NATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQENAFNELKDKLTNAP 775
           N +EVRSFHGLA FYRRF+KDFS+IA+PL E++KK V F+W+  QENAF  LK+KLTN+P
Sbjct: 796 NVSEVRSFHGLAGFYRRFVKDFSTIAAPLTEVIKKDVAFKWEAAQENAFQALKEKLTNSP 855

Query: 776 CLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNGAQLNYPTYDKELYALMRA 835
            L LPNF K+FEIECDASGIGIGAVLMQ+ +PI FFSEKL GA LNYPTYDKELYAL+RA
Sbjct: 856 VLILPNFMKTFEIECDASGIGIGAVLMQDHKPIAFFSEKLGGATLNYPTYDKELYALVRA 915

Query: 836 LQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWVEFIETFPYVIHYKKGKDNVVA 874
           LQ WQHYLWPKEFVIHTDHESLKHLK Q KLN+RHA+WVEFIETFPYVI YKKGKDNVVA
Sbjct: 916 LQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVA 975

[Close]

BLAST of CmoCh13G002920 vs. NCBI nr
Match: gi|923770355|ref|XP_013679371.1| (PREDICTED: uncharacterized protein LOC106383863 [Brassica napus])

HSP 1 Score: 589.0 bits (1517), Expect = 1.6e-164
Identity = 273/392 (69.64%), Postives = 329/392 (83.93%), Query Frame = 1


Query: 489  GLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGYVRESMSPCSVPV 548
            GLPP+R IEHQID VPGA+LPN  AYRTNP ETKE+Q+Q+ +L++K Y+RES+SPC+VPV
Sbjct: 644  GLPPVRSIEHQIDLVPGASLPNRPAYRTNPVETKELQKQIGDLLEKDYIRESLSPCAVPV 703

Query: 549  ILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSKIDLKSGYHQIRM 608
            +LVPKKD +W MCVDCRAIN ITVKYRHPIPRLDDMLDEL+G+ +FSKIDL+SGYHQIRM
Sbjct: 704  LLVPKKDGSWHMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFSKIDLESGYHQIRM 763

Query: 609  NVGDEWKTAFKTKFG---LYEWLVMSFGLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVG 668
              GDEWKTAFKTK G   L +  +    +    +K KL+AN  KCSF  D V FLGF+VG
Sbjct: 764  KEGDEWKTAFKTKLGFKNLEDHKMHLKSVLEVLRKEKLFANLGKCSFGTDHVVFLGFVVG 823

Query: 669  KKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKF 728
              G+ VDEEK+KAIR+WP+P+   EVRSFHGLA FYRRF+ DFSSIA+PL E++KK+V F
Sbjct: 824  ADGLGVDEEKIKAIRDWPSPSTVGEVRSFHGLAGFYRRFVPDFSSIAAPLTEVIKKNVGF 883

Query: 729  EWKEKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEK 788
            +W++ QE AF  LK KLT AP L LP+F K+FEIECDASG+GIGAVLMQ+++PI +FSEK
Sbjct: 884  KWEQAQEKAFQMLKVKLTYAPLLVLPDFSKTFEIECDASGVGIGAVLMQDRKPIAYFSEK 943

Query: 789  LNGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQTKLNRRHAKWV 848
            L GA LNYP YD+ELYAL+RALQ WQHYLWPKEFVIHTDH+SL+HLK Q KLN+RHA+WV
Sbjct: 944  LGGATLNYPAYDQELYALVRALQTWQHYLWPKEFVIHTDHQSLRHLKGQQKLNKRHARWV 1003

Query: 849  EFIETFPYVIHYKKGKDNVVANALSRRFSKMA 878
            EFIETFPYVI YK+GK+NVVA+ALSRR++ ++
Sbjct: 1004 EFIETFPYVIKYKQGKENVVADALSRRYTLLS 1035

[Close]

BLAST of CmoCh13G002920 vs. NCBI nr
Match: gi|38344133|emb|CAD39843.2| (OSJNBb0072N21.12 [Oryza sativa Japonica Group])

HSP 1 Score: 585.9 bits (1509), Expect = 1.3e-163
Identity = 294/551 (53.36%), Postives = 378/551 (68.60%), Query Frame = 1


Query: 404 DHDSQLVEEIAAYDDEYFEEGNFISLITRRVLNVQIKEEKFEDQRENLFHTRCLVKGNPC 463
           D   Q  E I A   E++E     SL+ +RVL+ Q++  + ++QR  LF T+C++K   C
Sbjct: 397 DAPHQDEEHIGAEAAEHYE-----SLVVQRVLSAQMERAE-QNQRHTLFQTKCVIKERSC 456

Query: 464 SLVIDSGSCTNV------------------------------EFNDIFPHEDACMGLPPL 523
            ++I  GSC N+                              E+ DIF  E    GLPP+
Sbjct: 457 RVIIYGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEYADIFSKE-VPPGLPPI 516

Query: 524 RGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGYVRESMSPCSVPVILVPK 583
           RGIEHQID +PGA+LPN A YRTNP ETKEIQRQV+EL+DKGYVRES+SPC+VPV+LVPK
Sbjct: 517 RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 576

Query: 584 KDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSKIDLKSGYHQIRMNVGDE 643
           KD +WRMCVDCRAIN IT++YRHPIPRLDDMLDEL G+ +FSKIDL+SGYHQIRM +GDE
Sbjct: 577 KDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDE 636

Query: 644 -------------W-------KTAFKTKFGLYEWLVMSF--------------------- 703
                        W         A  T   L   ++ +F                     
Sbjct: 637 WKTAFKTKFSLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDGILIYSRSIED 696

Query: 704 ------GLTNAPKKRKLYANFKKCSFCLDQVNFLGFLVGKKGVQVDEEKVKAIREWPTPT 763
                  + +A +  +L+ N +KC+FC D+V+FLG++V  +G++VD+ KV+AI  WP PT
Sbjct: 697 HHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPT 756

Query: 764 NATEVRSFHGLASFYRRFIKDFSSIASPLNELVKKHVKFEWKEKQENAFNELKDKLTNAP 823
             T+VRSF GLA FYRRF+KDFS+IA+PL+EL K++V F W   Q NAF+ LKDKLT+AP
Sbjct: 757 TITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAP 816

Query: 824 CLALPNFDKSFEIECDASGIGIGAVLMQEKRPIMFFSEKLNGAQLNYPTYDKELYALMRA 878
            L LP+F+K+FE+ECDASGIG+G VL+QE +P+ +FSEKL+G  LNY TYDKEL+AL+R 
Sbjct: 817 LLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSLNYSTYDKELFALVRT 876

[Close]

BLAST of CmoCh13G002920 vs. NCBI nr
Match: gi|923748122|ref|XP_013673383.1| (PREDICTED: uncharacterized protein LOC106377669 [Brassica napus])

HSP 1 Score: 585.1 bits (1507), Expect = 2.3e-163
Identity = 273/398 (68.59%), Postives = 329/398 (82.66%), Query Frame = 1


Query: 477 FNDIFPHEDACMGLPPLRGIEHQIDFVPGATLPNMAAYRTNPTETKEIQRQVEELVDKGY 536
           + D+FP E    GLPP+RGIEHQID VPGA LPN AAYR NP E KE++RQV++L+DKGY
Sbjct: 170 YKDVFPDEIPA-GLPPVRGIEHQIDLVPGAPLPNRAAYRVNPEEAKELERQVQDLMDKGY 229

Query: 537 VRESMSPCSVPVILVPKKDDTWRMCVDCRAINKITVKYRHPIPRLDDMLDELYGANLFSK 596
           +RES+SPC+VPV+LVPKKD TWRMCVDCRAIN IT+KYR+PIPRLDDMLDEL G+ +FSK
Sbjct: 230 IRESLSPCAVPVLLVPKKDGTWRMCVDCRAINNITIKYRYPIPRLDDMLDELSGSVVFSK 289

Query: 597 IDLKSGYHQIRMNVGDEWKTAFKTKFGLYEWLVMSFGLTNAPKKRKLYANFKKCSFCLDQ 656
           IDL+SGYHQ+RM  GDEWKTAFKTK GLYEWLVM FGLTNAP      + F +    +++
Sbjct: 290 IDLRSGYHQVRMKEGDEWKTAFKTKQGLYEWLVMPFGLTNAP------STFMRL---MNE 349

Query: 657 V--NFLGFLVGKKGVQVDEEKVKAIREWPTPTNATEVRSFHGLASFYRRFIKDFSSIASP 716
           V   ++GF+V  +G++VDEEK+KAI++WPTPT     RSFHGLASFYRRF+KDFS+IA+P
Sbjct: 350 VLRPYIGFVVSSQGLKVDEEKIKAIQDWPTPTTIGHTRSFHGLASFYRRFVKDFSTIAAP 409

Query: 717 LNELVKKHVKFEWKEKQENAFNELKDKLTNAPCLALPNFDKSFEIECDASGIGIGAVLMQ 776
           +  ++KK+V F W   QE +FN LK  LT+AP L LPNFDK FEIECDASG GIGAVL Q
Sbjct: 410 MTSVIKKNVTFAWGPAQEESFNRLKYSLTHAPVLTLPNFDKPFEIECDASGTGIGAVLTQ 469

Query: 777 EKRPIMFFSEKLNGAQLNYPTYDKELYALMRALQVWQHYLWPKEFVIHTDHESLKHLKSQ 836
             RP+ FFSEKL+GA LNYPTYDKELYAL+R+L+ W+HYL  KEF+IHTDHE+LKHL+ Q
Sbjct: 470 GGRPVAFFSEKLSGAALNYPTYDKELYALVRSLETWRHYLLSKEFIIHTDHETLKHLRGQ 529

Query: 837 TKLNRRHAKWVEFIETFPYVIHYKKGKDNVVANALSRR 873
           T L +RHA+W+EF+ETFPYVI YKKGKDN+VA+ALSRR
Sbjct: 530 TTLKKRHARWLEFVETFPYVIKYKKGKDNIVADALSRR 557

The following BLAST results are available for this feature:

BLAST of CmoCh13G002920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL3_DROME	1.1e-67	31.72	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
YG31B_YEAST	2.7e-63	33.48	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	3.0e-62	33.26	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
POL2_DROME	8.6e-62	34.79	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POLY_DROME	2.2e-41	41.18	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of CmoCh13G002920 vs. TrEMBL


Match Name	E-value	Identity	Description
Q7XWZ0_ORYSJ	9.3e-164	53.36	OSJNBb0072N21.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0072N21.12 PE=...	[more]
Q8L7J3_MAIZE	1.0e-157	61.20	Gag-pol polyprotein OS=Zea mays PE=4 SV=1	[more]
Q8S6I8_ORYSJ	1.2e-155	58.80	Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBb0023M11.5 PE=4 SV...	[more]
Q339J2_ORYSJ	1.2e-155	58.80	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap...	[more]
Q8LM42_ORYSJ	1.2e-155	58.80	Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNAb0078C13.21 PE=4 S...	[more]

BLAST of CmoCh13G002920 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	1.0e-20	41.32	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh13G002920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729312287\|ref\|XP_010530537.1\|	1.8e-184	49.46	PREDICTED: uncharacterized protein LOC104807122 [Tarenaya hassleriana]	[more]
gi\|727559255\|ref\|XP_010451906.1\|	1.1e-170	69.09	PREDICTED: uncharacterized protein LOC104734098 [Camelina sativa]	[more]
gi\|923770355\|ref\|XP_013679371.1\|	1.6e-164	69.64	PREDICTED: uncharacterized protein LOC106383863 [Brassica napus]	[more]
gi\|38344133\|emb\|CAD39843.2\|	1.3e-163	53.36	OSJNBb0072N21.12 [Oryza sativa Japonica Group]	[more]
gi\|923748122\|ref\|XP_013673383.1\|	2.3e-163	68.59	PREDICTED: uncharacterized protein LOC106377669 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002920.1	CmoCh13G002920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 551..638 score: 1.4
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 283..333 score: 1.7E-4coord: 500..639 score: 1.1
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 544..904 score: 2.1E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 255..325 score: 3.0E-9coord: 476..858 score: 8.12E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002920	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002920	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002920	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002920	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002920	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002920	Watermelon (97103) v2	cmowmbB198
CmoCh13G002920	Wax gourd	cmowgoB0259
CmoCh13G002920	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G002920	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G002920	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002920	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002920	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002920	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002920	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002920	Watermelon (Charleston Gray)	cmowcgB179
CmoCh13G002920	Watermelon (97103) v1	cmowmB185
CmoCh13G002920	Watermelon (97103) v1	cmowmB191