CmoCh13G002900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic
Location	Cmo_Chr13 : 2642697 .. 2642963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGAGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGCCTATATGGTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAACCCCTGCTCATCAATGGACTCCTGACGTATACAAAGGCGTGCGGTTCGTTCGATAA

mRNA sequence

ATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGAGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGCCTATATGGTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAACCCCTGCTCATCAATGGACTCCTGACGTATACAAAGGCGTGCGGTTCGTTCGATAA

Coding sequence (CDS)

ATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGAGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGCCTATATGGTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAACCCCTGCTCATCAATGGACTCCTGACGTATACAAAGGCGTGCGGTTCGTTCGATAA

Homology

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BLAST of CmoCh13G002900 vs. Swiss-Prot
Match: NU2C2_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. Swiss-Prot
Match: NU2C1_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. Swiss-Prot
Match: NU2C1_CUCSA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG 84
           +YGSSGGEIELQEIVNGLLNTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002900 vs. Swiss-Prot
Match: NU2C2_CUCSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG 84
           +YGSSGGEIELQEIVNGLLNTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002900 vs. Swiss-Prot
Match: NU2C2_BUXMI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Buxus microphylla GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-21
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG 84
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002900 vs. TrEMBL
Match: Q5M9W2_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf101d PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-34
Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 1


Query: 1  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS--- 60
          MYGLMR L NIYSWV Q LLFWFMVSL YMVY G SGGEIELQEIVNGL+NTQMYNS   
Sbjct: 1  MYGLMRRLLNIYSWVGQALLFWFMVSLGYMVYHGLSGGEIELQEIVNGLINTQMYNSPGI 60

Query: 61 ---LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR 89
             LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Sbjct: 61 SIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVR 95

[Close]

BLAST of CmoCh13G002900 vs. TrEMBL
Match: A0A166GJN9_COFCA (NADH dehydrogenase subunit 2 OS=Coffea canephora GN=ndhB PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. TrEMBL
Match: B9T5I2_RICCO (NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_0379560 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 78  LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 137

[Close]

BLAST of CmoCh13G002900 vs. TrEMBL
Match: M1B8G4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015298 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 121 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 180

[Close]

BLAST of CmoCh13G002900 vs. TrEMBL
Match: A0A023ZQY2_BETVU (NADH-plastoquinone oxidoreductase subunit 2 OS=Beta vulgaris subsp. vulgaris GN=ndhB PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. TAIR10
Match: ATCG00890.1 (ATCG00890.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-21
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG 84
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLS  P+HQWTPDVY+G
Sbjct: 78  LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of CmoCh13G002900 vs. TAIR10
Match: ATCG01250.1 (ATCG01250.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-21
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG 84
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLS  P+HQWTPDVY+G
Sbjct: 78  LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of CmoCh13G002900 vs. NCBI nr
Match: gi|57013979|ref|YP_173451.1| (hypothetical protein NitaMp113 [Nicotiana tabacum])

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-34
Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 1


Query: 1  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS--- 60
          MYGLMR L NIYSWV Q LLFWFMVSL YMVY G SGGEIELQEIVNGL+NTQMYNS   
Sbjct: 1  MYGLMRRLLNIYSWVGQALLFWFMVSLGYMVYHGLSGGEIELQEIVNGLINTQMYNSPGI 60

Query: 61 ---LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR 89
             LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Sbjct: 61 SIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVR 95

[Close]

BLAST of CmoCh13G002900 vs. NCBI nr
Match: gi|972464987|ref|WP_059051737.1| (hypothetical protein [Myroides odoratimimus])

HSP 1 Score: 111.3 bits (277), Expect = 8.6e-22
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGLLNTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. NCBI nr
Match: gi|992331617|ref|YP_009229523.1| (NADH dehydrogenase subunit 2 (chloroplast) [Aquilaria sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. NCBI nr
Match: gi|116617152|ref|YP_817527.1| (NADH-plastoquinone oxidoreductase subunit 2 [Coffea arabica])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

[Close]

BLAST of CmoCh13G002900 vs. NCBI nr
Match: gi|628819152|gb|AHY80585.1| (NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 31  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGV 89
           +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

The following BLAST results are available for this feature:

BLAST of CmoCh13G002900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU2C2_COFAR	9.2e-24	82.81	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica GN=n...	[more]
NU2C1_COFAR	9.2e-24	82.81	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=n...	[more]
NU2C1_CUCSA	4.3e-21	83.05	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus GN=...	[more]
NU2C2_CUCSA	4.3e-21	83.05	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus GN=...	[more]
NU2C2_BUXMI	7.3e-21	81.36	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Buxus microphylla G...	[more]

BLAST of CmoCh13G002900 vs. TrEMBL


Match Name	E-value	Identity	Description
Q5M9W2_TOBAC	4.0e-34	82.11	Uncharacterized protein OS=Nicotiana tabacum GN=orf101d PE=4 SV=1	[more]
A0A166GJN9_COFCA	1.0e-21	82.81	NADH dehydrogenase subunit 2 OS=Coffea canephora GN=ndhB PE=4 SV=1	[more]
B9T5I2_RICCO	1.0e-21	82.81	NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_0379560 PE=4 SV=1	[more]
M1B8G4_SOLTU	1.0e-21	82.81	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015298 PE=4 SV=1	[more]
A0A023ZQY2_BETVU	1.0e-21	82.81	NADH-plastoquinone oxidoreductase subunit 2 OS=Beta vulgaris subsp. vulgaris GN=...	[more]

BLAST of CmoCh13G002900 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00890.1	5.9e-21	79.66	ATCG00890.1 NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	5.9e-21	79.66	ATCG01250.1 NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

BLAST of CmoCh13G002900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|57013979\|ref\|YP_173451.1\|	5.8e-34	82.11	hypothetical protein NitaMp113 [Nicotiana tabacum]	[more]
gi\|972464987\|ref\|WP_059051737.1\|	8.6e-22	84.38	hypothetical protein [Myroides odoratimimus]	[more]
gi\|992331617\|ref\|YP_009229523.1\|	1.5e-21	82.81	NADH dehydrogenase subunit 2 (chloroplast) [Aquilaria sinensis]	[more]
gi\|116617152\|ref\|YP_817527.1\|	1.5e-21	82.81	NADH-plastoquinone oxidoreductase subunit 2 [Coffea arabica]	[more]
gi\|628819152\|gb\|AHY80585.1\|	1.5e-21	82.81	NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Beta vulgaris subsp. vulg...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002900.1	CmoCh13G002900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 22..83 score: 2.
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 17..84 score: 7.9
None	No IPR available	PANTHER	PTHR22773:SF84	SUBFAMILY NOT NAMED	coord: 17..84 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002900	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002900	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002900	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002900	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002900	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002900	Watermelon (97103) v2	cmowmbB198
CmoCh13G002900	Wax gourd	cmowgoB0259
CmoCh13G002900	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh13G002900	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G002900	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002900	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002900	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002900	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002900	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002900	Watermelon (Charleston Gray)	cmowcgB179
CmoCh13G002900	Watermelon (97103) v1	cmowmB185
CmoCh13G002900	Watermelon (97103) v1	cmowmB191