CmoCh13G001290 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G001290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr13 : 732032 .. 735062 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGATTCGAAGTTGAGAAATATTTGTAGTGCGACAGAGAAATGGCGGCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCTGGGTATCTCTCTTTTACCGAATTTACTTTTTTTTTCGTTTTAGATCGTTAAAAAGCTCGATTAATTTTATATAAGTCGAGTAGGGTTTGAACAAATAACTCGAATTATCGTCCGTTCGAGCGTAGCTAAGATACCTATTACCATCTTAAATATCGATGATTCGATCCTGAACTAGAAGAACTTGATTTACGCTTATCAAGTCAACCAACGAATTTGTTCTAAAAGAAATATTCTTACCTAGTTCGGTACTCGGTTGATTTTTAAGGAGGATGTTATCACCAACTTTGGAAACAAGTATTGGAAAAACTCGATCAGCTCGATTAAATTTGCATATGTCAGAGCTGAGTTTGAACAAAGAACTCGAATCATTACTAGTTCGAGCGTAGCTAAAGTCTGAGTGTCATCCCAAATATCGATGATTTGACCCTAAACTAAAAAAAAACTTGATTTTCCGGACCAACCAACCAACGATTTGTTCTAAAAGAAATATCCTTACCCAATTGGGTAAACGATCGATCTTTAAAGAAGATGTTATCACTGACTTTGGAAACACGTATTGGAAAAAATTTGATCAGCTCAATTAAATTTACATACGTCGAGCTGGGTTTAAACAAATAACTCGAGATTTTAAAACGCATCAACTAAGGAGAGGTTTTCACACCCTAGTAAATAATGTTTCGTTCTCCTCTCCCACGTGTCCACTGGAGAGAATCATCGAGTCAGTTTAGCCCTTTCGTTAAGATTCAGTTTACATAATCTTTACGTGTATGTATATACGATATTTTTCATTAAAACGTGTTCGTAATGTTTGCAGAACCATCACAGCCACCATCCCGAAGAAGTAAGTGATAATTTTTAGTAGTTTTCTTTCAGAAACATCATAAAATCATCAAGAAATTGAACTTATAAACAATAAACCATGCAGGGATGGGTGCAGCTGTGGGAGTGGCTGCTCATGTGACCCATGCAACTGCTAAGTGAACAAGATGCCCAAACGACAACAACAAAGCTTCTTATCCATAGAATAAACAGAATTTGGTGTTCTTTTTCTTGTTCTTTTTCTTGTTCTTTTTCTTGAAATGTGTAGTGTGAAGTGAAGTGTGTGATGTTGCTTTGTTGTGGGTGGGCATTTGGGGTTCATATCAGATCATCAAAGTTCCTATGTGTGTTTGAATTTATGTTTTATATCGATATTTGTTTCGTGTCATAGCTTTCGTGTTCTTTTAACTTCCCTTCTCTCGTTTTTTTTTTGTCTCTTAATCCGTTTATGAATTTAGTTTTTATAGTTTGAAGTTGTGGGACGAACTAAACTTGTCTTTATTGTTCGTTACTTATTCTCCTTTAGAAGGCTCTTATCATTCTTTACCAATTTAAACATAGCTCAACTACGAAAAGGTCAAAGTTTTTTGAATTCTTGACTATTGGGGTCAGAGAATGCAAACACATGCAACATGAACGAGACATATCATTTAAAATCGTATTCTCTTAGATGGCCTTCCGTCTGGGGAAGTTGGATGTATAGTACCTCTCTATACACAACCCATACGTGCAATCGTGGGCCTACCAAGCAGACTCGCACATCCCCTGGGCCAACTAGTCGAGTTAGCTCCTCTGGGTTGTAGTTGGACACCCGAAGGTACAGCGGCCGTTGTGCACCATGCCAAGCATGCGGGTCATTTCAGTCTCATAGTGTCTGCATCTATACTCATAATAAATGGGAAGTATCTCGATGCATATAAACATACAATTACATCGAAGTCCTCGTACTTTTCATTATAAATAAATCATCTTTCATTCCTTACAAATTACAGTTAATATGCATACATAAGTCATTTGGATACATATCATAGCATGTCATAACGTGTCACTGTCAAACATATTCATAATAAATCGTGGCATCTTATAACATAACATAACTCATCGTAACATGAATTGACATTTCATTTCTAACCCAACGTTATTTAGCGTATCATAAAGCAATACATATCATATTATCAGACATTAAATATATCACAAATATGACACGTTCAAGACTATAGGCACGTGTGATCGTATACATAAACCAATTCTTCCAATTAATCGATAGTAGAGCTACTTACTTGGTTGACCTAAACCGAAACTACTACAACCCATTGGTGCTAGTCCTCTCTGAAATTTAATTCTATTTAAAGAGTTCTATAATCATAAATCAGAATTCTCATATGTCAATTGACTCATCTAACTGAGGATAATACGAACTTATTAGATCCAAGTCGAATCAGCTGAAATGCATGTATAGAGCCAGCAGTCAAAAAAATATATTCTCTACTGGCTTCAAACCGTTCAAGTGGGGACCACTAATGGCCATAAATCTAAACTTTTTAAAAATAGAAAGACCAAGTCAACACACTATCGACACCTAACCATATAATTTAATTTAATTATAAATCTAGTTTTTTAAAACTTGCAAGTTTGTATCAATTTTATATTTAATAAATTTTTTAATTTATTTTAAAGAATTATCTGCTCAAATGATATAATAAATTTGATGTCGATTAAAATAATTATAATACTAAAATTTATTTTATTTTAAAAATATTAAATTACAAATTTTTTAAAGCTTTTATTTGAGTATCTAAAGTTTTTTTTTTTTTAATATTTAATATATTTTTTTTAATATTAAATTACAAAACATGTTGGAAATACTCGTATTTAGTCTCCGGATGTTAATTCATTTTTATAACAGATAATAATTAATAATATCAATTAAATAATGGAGAGGGTTTCCATCTTATGACTTTGGGAATTATTTAAATTAAAGAAAGAGGTTCATAAAGGATAACGAAGTATAGGTAGGAACCGTCCACGTGTACGGTGGATAATCACCACCAATTGGGGCCTCAAGAGCTCTATATAAACGGGAAACTTTTGATACTCAAAAACCAGAA

mRNA sequence

TTTGATTCGAAGTTGAGAAATATTTGTAGTGCGACAGAGAAATGGCGGCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCTGGAACCATCACAGCCACCATCCCGAAGAAGGATGGGTGCAGCTGTGGGAGTGGCTGCTCATAA

Coding sequence (CDS)

ATGGCGGCTGGCTGCAACTGTGGTGATAACTGCTCCTGTGGAGACAGCTGCAACTGTCAATCTGGAACCATCACAGCCACCATCCCGAAGAAGGATGGGTGCAGCTGTGGGAGTGGCTGCTCATAA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001008Metallothionein, mollusc
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001290.1CmoCh13G001290.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001008Metallothionein, molluscPRINTSPR00875MTMOLLUSCcoord: 34..41
score: 2.7E-5coord: 5..16
score: 2.7E-5coord: 17..24
score: 2.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G001290Cucumber (Gy14) v2cgybcmoB454
CmoCh13G001290Melon (DHL92) v3.6.1cmomedB198
CmoCh13G001290Melon (DHL92) v3.6.1cmomedB203
CmoCh13G001290Melon (DHL92) v3.6.1cmomedB218
CmoCh13G001290Silver-seed gourdcarcmoB0212
CmoCh13G001290Silver-seed gourdcarcmoB0517
CmoCh13G001290Silver-seed gourdcarcmoB0594
CmoCh13G001290Cucumber (Chinese Long) v3cmocucB0236
CmoCh13G001290Cucumber (Chinese Long) v3cmocucB0248
CmoCh13G001290Cucumber (Chinese Long) v3cmocucB0253
CmoCh13G001290Watermelon (97103) v2cmowmbB204
CmoCh13G001290Watermelon (97103) v2cmowmbB209
CmoCh13G001290Watermelon (97103) v2cmowmbB217
CmoCh13G001290Wax gourdcmowgoB0238
CmoCh13G001290Wax gourdcmowgoB0245
CmoCh13G001290Cucurbita moschata (Rifu)cmocmoB173
CmoCh13G001290Cucurbita moschata (Rifu)cmocmoB180
CmoCh13G001290Cucurbita moschata (Rifu)cmocmoB189
CmoCh13G001290Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G001290Cucurbita maxima (Rimu)cmacmoB458
CmoCh13G001290Cucurbita maxima (Rimu)cmacmoB543
CmoCh13G001290Cucurbita maxima (Rimu)cmacmoB577
CmoCh13G001290Wild cucumber (PI 183967)cmocpiB206
CmoCh13G001290Wild cucumber (PI 183967)cmocpiB217
CmoCh13G001290Cucumber (Chinese Long) v2cmocuB204
CmoCh13G001290Cucumber (Chinese Long) v2cmocuB214
CmoCh13G001290Melon (DHL92) v3.5.1cmomeB178
CmoCh13G001290Melon (DHL92) v3.5.1cmomeB181
CmoCh13G001290Watermelon (Charleston Gray)cmowcgB180
CmoCh13G001290Watermelon (Charleston Gray)cmowcgB184
CmoCh13G001290Watermelon (97103) v1cmowmB173
CmoCh13G001290Watermelon (97103) v1cmowmB197
CmoCh13G001290Cucurbita pepo (Zucchini)cmocpeB202
CmoCh13G001290Cucurbita pepo (Zucchini)cmocpeB205
CmoCh13G001290Bottle gourd (USVL1VR-Ls)cmolsiB186
CmoCh13G001290Bottle gourd (USVL1VR-Ls)cmolsiB191
CmoCh13G001290Cucumber (Gy14) v2cgybcmoB069