CmoCh13G000630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G000630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S acidic ribosomal protein P0-A
Location	Cmo_Chr13 : 383708 .. 384771 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTATGGAAACAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCCCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTTTCTTATGTGAACTAGTTACCTCCAATTTTAAACCGTTCAATTTGGAAAAGGGTCTCAACTTAAGAGTTGAATGATCTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGACCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAATGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTTATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCATTCCCCCAGGCTGATGAAGTCAAAGAATTCTTGAAGGTTCGTAAGCCTTCAGCTTTCTTAAACTCCTCAATATATCGTAAATGCTTAGATATAGTTCTATTTAGATTTCTGTTTTGGGCTGATAAAGTTTTATTTTGATCTTTTTAATTACTTTCAAACTTTCTATATTAGACATTATAAGTTCCTGCTAACCTTTTCAAATGGCATATTTTTAGTGGGATCCACTTACCTTAGGCATTTTAGCATTTTAGCAGGGTTCATTTATTCATTAGATGCAGTAGAAATGAACTAGAAATAAAGCGTATTGAAAACAAAATGGTATATGACTTATTTGGTATGGTGGTGGAAAAATGGTAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAAGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

mRNA sequence

ATGCATTTATGGAAACAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCCCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGACCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAATGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTTATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCATTCCCCCAGGCTGATGAAGTCAAAGAATTCTTGAAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAAGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

Coding sequence (CDS)

ATGCATTTATGGAAACAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCCCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGACCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAATGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTTATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCATTCCCCCAGGCTGATGAAGTCAAAGAATTCTTGAAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAAGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

Homology

[Close]

BLAST of CmoCh13G000630 vs. Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 323.2 bits (827), Expect = 2.2e-87
Identity = 168/214 (78.50%), Postives = 193/214 (90.19%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+AP+DV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSE+ALL+KLGIRPFSYGL++ +VYD+GSVF PEVLDLTE+DL+EKF SGVSMVAS+
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASV 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PT+AAAPHM +N YKN+LAVAV TEYS+P AD++KE+LKDPSKF A AAP A D
Sbjct: 229 SLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF-AVAAPVAAD 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
              GA+A +A  EEEK  EPEEESDGD+ M LFD
Sbjct: 289 --SGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319

[Close]

BLAST of CmoCh13G000630 vs. Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 321.2 bits (822), Expect = 8.5e-87
Identity = 169/214 (78.97%), Postives = 192/214 (89.72%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+AP+DV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG+
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGE 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSE+ALL+KLGIRPFSYGL V SVY++GSVF PEVLDL+EEDL+EKF +GVSMVASL
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAA PHM IN YKN+LAVAV T+YS+P AD++KE+LKDPSKFA AA  AAGD
Sbjct: 229 SLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKFAVAAPVAAGD 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
               + A+AAP EEEKAAEPEEESD +M   LFD
Sbjct: 289 ----SGASAAPKEEEKAAEPEEESDEEMGFSLFD 318

[Close]

BLAST of CmoCh13G000630 vs. Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.5e-86
Identity = 170/214 (79.44%), Postives = 189/214 (88.32%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGD
Sbjct: 109 KVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+ KF +GVSMV SL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM +NAYKN+LAVAV T+YSFP+AD+VKE+LKDPSKFA AA  A   
Sbjct: 229 SLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
            SG  +AAA   EEEK  EP EESD DM   LFD
Sbjct: 289 ASGAPAAAA--KEEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of CmoCh13G000630 vs. Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.5e-83
Identity = 167/213 (78.40%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V SVYDNGSVF+PEVL+LTE+DL+EKF +GVSM+ +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PT+AAAPHM +NAYKN+LAVA+ATEYSFPQA+ VKEFLKDP+KFA A A     
Sbjct: 229 SLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSG 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLF 219
           ESGGA  A A  EEE A    EESDGDM   LF
Sbjct: 289 ESGGAVVAVA-VEEEAA----EESDGDMGFDLF 316

[Close]

BLAST of CmoCh13G000630 vs. Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-83
Identity = 163/214 (76.17%), Postives = 186/214 (86.92%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           +LAVS+PTLAAAPHM INAYKN LA+AVAT+Y+FPQA++VKEFLKDPSKF  AAA  + D
Sbjct: 228 ALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSAD 287

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GG++ A A A+ E+  E  +E D +   GLFD
Sbjct: 288 AGGGSAQAGAAAKVEEKKEESDEEDYEGGFGLFD 321

[Close]

BLAST of CmoCh13G000630 vs. TrEMBL
Match: A0A0A0LV50_CUCSA (60S acidic ribosomal protein P0 OS=Cucumis sativus GN=Csa_1G530120 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.1e-92
Identity = 191/215 (88.84%), Postives = 198/215 (92.09%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVF P VLDL+EEDLLEKFL+GVSMVASL
Sbjct: 169 KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFSPAVLDLSEEDLLEKFLAGVSMVASL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLAVSFPTLAAAPHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFAAAAAPA   
Sbjct: 229 SLAVSFPTLAAAPHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFAAAAAPAVAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESD-GDMIMGLFD 220
           ES    AAA  A EEK  EPEEESD GDMIMGLFD
Sbjct: 289 ES---VAAAPAAVEEKKEEPEEESDEGDMIMGLFD 320

[Close]

BLAST of CmoCh13G000630 vs. TrEMBL
Match: A0A0B0PKP6_GOSAR (60S acidic ribosomal protein P0 OS=Gossypium arboreum GN=F383_09321 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 5.2e-91
Identity = 181/214 (84.58%), Postives = 196/214 (91.59%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+EKF SGVSMV +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFASGVSMVTAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM IN YKN+LAVAVATEYSFPQAD+VKE+L DPSKFA AAAP AG 
Sbjct: 229 SLAISYPTLAAAPHMFINGYKNVLAVAVATEYSFPQADKVKEYLADPSKFAVAAAPVAGG 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GGA+ AAAPAEEEK  EPEEESD DM   LFD
Sbjct: 289 -GGGAAPAAAPAEEEKKPEPEEESDDDMGFSLFD 321

[Close]

BLAST of CmoCh13G000630 vs. TrEMBL
Match: A0A0D2UYW6_GOSRA (60S acidic ribosomal protein P0 OS=Gossypium raimondii GN=B456_011G283700 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 178/214 (83.18%), Postives = 195/214 (91.12%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG+
Sbjct: 109 KVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGE 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+EKF +GVSMV +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFATGVSMVTAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM IN YKN+LAVAVATEYSFPQAD+VKE+L DPSKFA AAAP A  
Sbjct: 229 SLAISYPTLAAAPHMFINGYKNILAVAVATEYSFPQADKVKEYLADPSKFAVAAAPVAA- 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GGA+ AAAPAEEEK  EPEEESD DM   LFD
Sbjct: 289 AGGGAAPAAAPAEEEKKPEPEEESDDDMGFSLFD 321

[Close]

BLAST of CmoCh13G000630 vs. TrEMBL
Match: A5AXI6_VITVI (60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VITISV_003812 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.7e-89
Identity = 177/214 (82.71%), Postives = 194/214 (90.65%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTEEDL+EKF +GVSMV SL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM +NAYKN+L+VAVATEYSFPQAD+VKEFLKDPSKFA A AP A  
Sbjct: 229 SLAISYPTLAAAPHMFVNAYKNVLSVAVATEYSFPQADKVKEFLKDPSKFAVAVAPVAAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
           ++GG  +AA P EEEK  EP EESD DM   LFD
Sbjct: 289 DAGG--SAAPPKEEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of CmoCh13G000630 vs. TrEMBL
Match: F6HNI3_VITVI (60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VIT_13s0019g03970 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.3e-89
Identity = 176/214 (82.24%), Postives = 194/214 (90.65%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTEEDL+EKF +GVSMV SL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM +NAYKN+L+VAVAT+YSFPQAD+VKEFLKDPSKFA A AP A  
Sbjct: 229 SLAISYPTLAAAPHMFVNAYKNVLSVAVATDYSFPQADKVKEFLKDPSKFAVAVAPVAAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
           ++GG  +AA P EEEK  EP EESD DM   LFD
Sbjct: 289 DAGG--SAAPPKEEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of CmoCh13G000630 vs. TAIR10
Match: AT2G40010.1 (AT2G40010.1 Ribosomal protein L10 family protein)

HSP 1 Score: 310.5 bits (794), Expect = 8.5e-85
Identity = 167/213 (78.40%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V SVYDNGSVF+PEVL+LTE+DL+EKF +GVSM+ +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PT+AAAPHM +NAYKN+LAVA+ATEYSFPQA+ VKEFLKDP+KFA A A     
Sbjct: 229 SLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSG 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLF 219
           ESGGA  A A  EEE A    EESDGDM   LF
Sbjct: 289 ESGGAVVAVA-VEEEAA----EESDGDMGFDLF 316

[Close]

BLAST of CmoCh13G000630 vs. TAIR10
Match: AT3G11250.1 (AT3G11250.1 Ribosomal protein L10 family protein)

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-84
Identity = 163/214 (76.17%), Postives = 186/214 (86.92%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           +LAVS+PTLAAAPHM INAYKN LA+AVAT+Y+FPQA++VKEFLKDPSKF  AAA  + D
Sbjct: 228 ALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSAD 287

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GG++ A A A+ E+  E  +E D +   GLFD
Sbjct: 288 AGGGSAQAGAAAKVEEKKEESDEEDYEGGFGLFD 321

[Close]

BLAST of CmoCh13G000630 vs. TAIR10
Match: AT3G09200.1 (AT3G09200.1 Ribosomal protein L10 family protein)

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-83
Identity = 164/214 (76.64%), Postives = 189/214 (88.32%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           +LAVS+PTLAAAPHM INAYKN LA+AVATEY+FPQA++VKE+LKDPSKFA A+  A   
Sbjct: 228 ALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSA 287

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
           ++GG + AAA  EE++ ++ EE+  GD   GLFD
Sbjct: 288 DAGGGAPAAAKVEEKEESD-EEDYGGD--FGLFD 318

[Close]

BLAST of CmoCh13G000630 vs. NCBI nr
Match: gi|449455034|ref|XP_004145258.1| (PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 8.8e-92
Identity = 191/215 (88.84%), Postives = 198/215 (92.09%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVF P VLDL+EEDLLEKFL+GVSMVASL
Sbjct: 169 KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFSPAVLDLSEEDLLEKFLAGVSMVASL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLAVSFPTLAAAPHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFAAAAAPA   
Sbjct: 229 SLAVSFPTLAAAPHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFAAAAAPAVAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESD-GDMIMGLFD 220
           ES    AAA  A EEK  EPEEESD GDMIMGLFD
Sbjct: 289 ES---VAAAPAAVEEKKEEPEEESDEGDMIMGLFD 320

[Close]

BLAST of CmoCh13G000630 vs. NCBI nr
Match: gi|728846019|gb|KHG25462.1| (60S acidic ribosomal P0 [Gossypium arboreum])

HSP 1 Score: 342.0 bits (876), Expect = 7.5e-91
Identity = 181/214 (84.58%), Postives = 196/214 (91.59%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+EKF SGVSMV +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFASGVSMVTAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM IN YKN+LAVAVATEYSFPQAD+VKE+L DPSKFA AAAP AG 
Sbjct: 229 SLAISYPTLAAAPHMFINGYKNVLAVAVATEYSFPQADKVKEYLADPSKFAVAAAPVAGG 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GGA+ AAAPAEEEK  EPEEESD DM   LFD
Sbjct: 289 -GGGAAPAAAPAEEEKKPEPEEESDDDMGFSLFD 321

[Close]

BLAST of CmoCh13G000630 vs. NCBI nr
Match: gi|659115087|ref|XP_008457380.1| (PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90
Identity = 189/215 (87.91%), Postives = 197/215 (91.63%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVF P VLDLTEEDLLEKFL+GVSMVASL
Sbjct: 169 KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFSPAVLDLTEEDLLEKFLAGVSMVASL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLAVSFPTLAAAPHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFAAAAAPAA  
Sbjct: 229 SLAVSFPTLAAAPHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFAAAAAPAAAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESD-GDMIMGLFD 220
           +S     AA  A E+K  EPEEESD  DMIMGLFD
Sbjct: 289 KS---VVAAPAAMEDKKEEPEEESDEEDMIMGLFD 320

[Close]

BLAST of CmoCh13G000630 vs. NCBI nr
Match: gi|823246136|ref|XP_012455740.1| (PREDICTED: 60S acidic ribosomal protein P0-like [Gossypium raimondii])

HSP 1 Score: 337.4 bits (864), Expect = 1.8e-89
Identity = 178/214 (83.18%), Postives = 195/214 (91.12%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG+
Sbjct: 109 KVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGE 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+EKF +GVSMV +L
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFATGVSMVTAL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM IN YKN+LAVAVATEYSFPQAD+VKE+L DPSKFA AAAP A  
Sbjct: 229 SLAISYPTLAAAPHMFINGYKNILAVAVATEYSFPQADKVKEYLADPSKFAVAAAPVAA- 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
             GGA+ AAAPAEEEK  EPEEESD DM   LFD
Sbjct: 289 AGGGAAPAAAPAEEEKKPEPEEESDDDMGFSLFD 321

[Close]

BLAST of CmoCh13G000630 vs. NCBI nr
Match: gi|147843260|emb|CAN80537.1| (hypothetical protein VITISV_003812 [Vitis vinifera])

HSP 1 Score: 335.9 bits (860), Expect = 5.4e-89
Identity = 177/214 (82.71%), Postives = 194/214 (90.65%), Query Frame = 1


Query: 6   QVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 65
           +VGAPARVGL+APIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGD
Sbjct: 109 KVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD 168

Query: 66  KVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASL 125
           KVGSSEAALL+KLGIRPFSYGL+V+SVYDNGSVF PEVLDLTEEDL+EKF +GVSMV SL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSL 228

Query: 126 SLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGD 185
           SLA+S+PTLAAAPHM +NAYKN+L+VAVATEYSFPQAD+VKEFLKDPSKFA A AP A  
Sbjct: 229 SLAISYPTLAAAPHMFVNAYKNVLSVAVATEYSFPQADKVKEFLKDPSKFAVAVAPVAAA 288

Query: 186 ESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD 220
           ++GG  +AA P EEEK  EP EESD DM   LFD
Sbjct: 289 DAGG--SAAPPKEEEKKEEPAEESDDDMGFSLFD 320

The following BLAST results are available for this feature:

BLAST of CmoCh13G000630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA0_ORYSJ	2.2e-87	78.50	60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 ...	[more]
RLA0_MAIZE	8.5e-87	78.97	60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3	[more]
RLA0_SOYBN	1.5e-86	79.44	60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1	[more]
RLA01_ARATH	1.5e-83	78.40	60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1	[more]
RLA03_ARATH	2.0e-83	76.17	60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1	[more]

BLAST of CmoCh13G000630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV50_CUCSA	6.1e-92	88.84	60S acidic ribosomal protein P0 OS=Cucumis sativus GN=Csa_1G530120 PE=3 SV=1	[more]
A0A0B0PKP6_GOSAR	5.2e-91	84.58	60S acidic ribosomal protein P0 OS=Gossypium arboreum GN=F383_09321 PE=3 SV=1	[more]
A0A0D2UYW6_GOSRA	1.3e-89	83.18	60S acidic ribosomal protein P0 OS=Gossypium raimondii GN=B456_011G283700 PE=3 S...	[more]
A5AXI6_VITVI	3.7e-89	82.71	60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VITISV_003812 PE=3 SV=1	[more]
F6HNI3_VITVI	8.3e-89	82.24	60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VIT_13s0019g03970 PE=3 SV=1	[more]

BLAST of CmoCh13G000630 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40010.1	8.5e-85	78.40	Ribosomal protein L10 family protein	[more]
AT3G11250.1	1.1e-84	76.17	Ribosomal protein L10 family protein	[more]
AT3G09200.1	1.2e-83	76.64	Ribosomal protein L10 family protein	[more]

BLAST of CmoCh13G000630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455034\|ref\|XP_004145258.1\|	8.8e-92	88.84	PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus]	[more]
gi\|728846019\|gb\|KHG25462.1\|	7.5e-91	84.58	60S acidic ribosomal P0 [Gossypium arboreum]	[more]
gi\|659115087\|ref\|XP_008457380.1\|	1.7e-90	87.91	PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo]	[more]
gi\|823246136\|ref\|XP_012455740.1\|	1.8e-89	83.18	PREDICTED: 60S acidic ribosomal protein P0-like [Gossypium raimondii]	[more]
gi\|147843260\|emb\|CAN80537.1\|	5.4e-89	82.71	hypothetical protein VITISV_003812 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000630.1	CmoCh13G000630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 7..106 score: 2.0E-88coord: 166..219 score: 2.0
None	No IPR available	PANTHER	PTHR21141:SF3	60S ACIDIC RIBOSOMAL PROTEIN P0	coord: 7..106 score: 2.0E-88coord: 166..219 score: 2.0
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 132..218 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G000630	Wild cucumber (PI 183967)	cmocpiB206
CmoCh13G000630	Wild cucumber (PI 183967)	cmocpiB214
CmoCh13G000630	Cucumber (Chinese Long) v2	cmocuB204
CmoCh13G000630	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G000630	Watermelon (Charleston Gray)	cmowcgB180
CmoCh13G000630	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G000630	Watermelon (97103) v1	cmowmB173
CmoCh13G000630	Watermelon (97103) v1	cmowmB197
CmoCh13G000630	Cucurbita pepo (Zucchini)	cmocpeB211
CmoCh13G000630	Cucurbita pepo (Zucchini)	cmocpeB202
CmoCh13G000630	Bottle gourd (USVL1VR-Ls)	cmolsiB186
CmoCh13G000630	Bottle gourd (USVL1VR-Ls)	cmolsiB191
CmoCh13G000630	Cucumber (Gy14) v2	cgybcmoB069
CmoCh13G000630	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G000630	Silver-seed gourd	carcmoB0517
CmoCh13G000630	Silver-seed gourd	carcmoB0594
CmoCh13G000630	Cucumber (Chinese Long) v3	cmocucB0236
CmoCh13G000630	Watermelon (97103) v2	cmowmbB204
CmoCh13G000630	Watermelon (97103) v2	cmowmbB209
CmoCh13G000630	Wax gourd	cmowgoB0238
CmoCh13G000630	Wax gourd	cmowgoB0245
CmoCh13G000630	Cucurbita moschata (Rifu)	cmocmoB173
CmoCh13G000630	Cucurbita moschata (Rifu)	cmocmoB180
CmoCh13G000630	Cucurbita moschata (Rifu)	cmocmoB189
CmoCh13G000630	Cucumber (Gy14) v1	cgycmoB0384
CmoCh13G000630	Cucumber (Gy14) v1	cgycmoB0402
CmoCh13G000630	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G000630	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G000630	Cucurbita maxima (Rimu)	cmacmoB577