CmoCh12G013640 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G013640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding family protein
LocationCmo_Chr12 : 11708302 .. 11714317 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTTTATTTGTCTGATACTCTGTATTGTGCTCTTCTTTCCTCTTTCTGCTCCCTCCTTCGAGGGTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTCCCCCTCTTCTCTATTTTTTTTTTCTCTCTTTTTCTTTGTTTTTTCATTTTCGTCCCAAGACTCCCCACTTCAAGATCTTCGTCTCCTCCATTCAATCTCACTCTTCCTGGAAGATGCAGTATCAGAGGCTTAGACAGCAGGCAATGATGCAGCAGTCTTTGTATCCCCACCCCGGCCTCCTCGCTGCTCCTCAGGTTTCTATCTCTCTCTTTTACTTTTGTTTTTTTGTTTTTTTTTTCCGTTAAATTTGGTTGCAAGATATGTATCCTCTTCTGATCGATCCTTTATTTCTCAGTTTTTTATTACTCCAGCTTCAATCTCTCTCCCCAGCTATTTTCTTGAAATCTGATTTCATTTTATCTATAAGGTGTAATATGTTTTTTCCTCAATTTAATGGAAAACGGGAAGGATTTCACTAGAGAACTAAAAGTTCAATAGGTGATAAGATATCAATCTTGGAAAGGAGCCCCGTGGATTCAAAACAAATCCTCCAATTGGTTATAATCATGCCGACGAAAACATTTTCGCCAGGAGCTGTGCCAATAAGAGTCTTGTACTGTGTAGTATCCCAATTGAACTCTTCCCAAGTGATGCGTAAAAGTGCGTGATTTCTTTTCAACCACAACTTCCATGGCACAAGATTTTATAAATATGGTCACTGAGAAGCTTTTTTAGACTTCCTACCGAGGTCAAACGCCTGTAATAACACATACCAAAGCTCCTTTGTAGTTGGAAAATGAAGAAACAGTTGGCTTTGGGTCTTGGAGTTCTCTTAGCATAAAAGACAACACTTAGGATTGGAATTAAAAAATCATACATGATGTCCAGAGACTATATTTCTACCTAAATGAAAGAAGCACATGGACATTTGTCTAGTGTGAGTCGCCTTTTATCAAATCTAGTAACAATGTACTGTTTTCATGTTTTTTTTATGAGTTCGGTTTCGCCCCCTCCTATTTCACTTTGATTGGCCCATTTGTGCTCACATACATACATGATAACATTTGCATGTTAATGAGTAAGTAGATGACAATCGATTAACTAGATTTCAAATATTACTCCTTTCTATTTTTTTCTTCAAACAAGGAACGAGACTTTTCATTAATGCAATGATTAAAAGGTTAACTTCAAAGATACAAACTCCACGTGAGAGTGAACGAAATAATAATAATAATAATAATAACGAAAACAATACAAGACTGGAAGTAACTAAAATGCAACAATCCTCCTCTCTATTCTTCTTGTACAAATTGTTGCCATTATTAATCATTATGCGAGTCTTTGGAGCCATCCAGTATTCGTTCAGAAATATGATTGTTAATGTATCAGTATCATATTCATCTTTACATCCATGACAAGTCCTTGGAGATTTATTGCTGAAGCACGAGTCAATTGTAGTATTTTTCTTCATCCCTGTACTTAGAACGTTACCCATTGTCTGTTGGTTGAGTCTGTCAGTAACACTATTTCTACATGGGTGAGGAGCGCAGATATGTTTTTCTAGGAAGGTTCTGTTTTTCTTTTATCCTTTCTTGTTTTTTTACTTTTTTATTTTGCAGATAGAGCCCATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTGCATGCCGCAGTGTGTGAGTGTTAAATAGATATTTTATTTCCTTTTTCCATTTTTTCATTTAGTTCATTTTAAATTTTAGATAGTAAGATAAGTCTTTATTTGGAATAACTTTCCCATTTTGCCTTCGATATAAGGTTCCTCCTTGGATTTGCCATTTGTTGATTGATTTCCATTGACACCTTATCATGTTCATTGTTTGCTAAAACTTATATCATTCTGGTTCGTATGTTGTTTGAATGCATTCAAGTACACTGATTTCTATTACATCTTTTATTGTTTGTAATTAGCCATCAATCTGAACTAATGAAAAAATATAGGTATGTTGGGAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGTATTGGACCCATTGAAGGATGTAAGCTCATTAGGAAAGAGAAGGTGTGCTTTCCATTTAGACTATCATTTGGTGCTATACGAACTCTTTCCATTACGATAATAAGAACTTTACCATCGGTTATAACTTTTGGATTTTGTTGGACTGTTTCTTCCTCAAGTAACCAGTTGGTGGAATTATTTCAAATAATCCAGTGTTGTCTCACAGATCAGGATCTTCTTTGAACGTGTTTTTTGTTAAATAAATAGGTACTAATCTTCTATCTCAACTTTTCTTTCTATTTATGCAGTCATCCTATGGTTTTGTGGACTACTTTGATCGCAGATCAGCTGCAGTTGCTATTATTTCTCTCAATGGAAGAAACTTGTAGGTGAAATTCTTTCTTGTATTTTTATTGACATTAGCCGAGTCATATATTTCGATATAATTTCACACAGGTTTGGACAACCTATAAAGGTTAATTGGGCATATGCAAGTAGTCAGAGAGAAGACACATCTGGTTGTATGCTCAGATTGTTTCTTTTTCCTTCGATTCTGTTTCCAATTATGATGAGTTTGTAGCATGCGGCTGCTGACATTTTTATATGGTGTTTTTATGCAGGTCATTTTAATATATTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTATCCCAGTTGTTCGTAAGTTTGTTATCCAAATTTTTGTTATGAGTCAGTCTGCTTGGCTTATGTTCAATGTTTGAGATGCGGTAGAGCTTAACTTAATACTATTCAACTGAGAGCACCTTGCTCCAGCACCTCTAACCTTATTTTCCTTTAATACTTCAGGGATGCAAGGGTTATGTGGGACCAGAAAACTGGACGGTCGAGGGGATATGGTTTTGTTGCTTTTCGGAATGAACAGGTTTTGGAATTATTTCAATATGATGTTTTTACCCCTTCCTGAGTCGCCCATCCTTTTGTTACCAATGTAGGAAGTCTTGTATTTGTTTTCTTCAGATTATGTTCATAATTGTACTTCTATTGATAATTATTTATTCTGCTTTCAGGATGCTCAAAGTGCAATTAATGACATAAATGGTATTCCTACTCTCTCTCTCTTGTTTGGAAATCTTATGTTGTATATTTATCTATTTAGTGTCTTAACCATATCTTGTCTTGAATCATGCAAGTAAAGAATGCAACGAATGGCATTATTGGGGAAATGAGAAACAGAGTTAAAATTATCTTACGAGAAATGAGTATGGAAACTTGATGTGAAACCCCAAGGGAACTGGATATGAGAACCTCTTCCATTTAAGGTCCCCCAAAGATCATCCTTGAACCTTGAAACAATTTGGATCAAGTCAAAAGGAAAAACTAGATTTATATTACCTTCAGGTCAATGATCAACGAGCAAGGATATATATATATATATATATATATATATATATATATATATATTTAATTTTTTAATTTTTTAATTTTTGAAGTTTAAGGTTGTAAAGACTCCAAAAGGTTAGTGATCAATCAAACTTGAACGTTTATAGGGACACTTGATCACAGAGAATTGACAAAAGGGTTTGGGAAAGGTTCTCGGCTATTTAGAGTCGCTCAAACACTGAATTTATTTCATCGAAGTCTTAACTACAATGACCTGAATAAGGCATGTAAGTAATCTTTAGGGAGGCAACAACCGAAGAAGGAAAACACTATAAGATCTCAAACAAACAAGGAAAACAAAATCCTACCAACCCAATAAGGCAAGAACTAAACTAAGTAATGTGTACTTTAAACAGTATCTCCCAAATAAATCTTAAACAAATGTCAAATATAAGAGTTAATACAAGGCTTAGAGACAAGCTAAAAAATAGTCTTAAACTAGGACGTTTCTATAGGCCTCCCGAAGCTCTTCCTATTGGATTGTGTTCAAGTAGCTTGGGTTCTTTGGAAAAGATATCTTTGATGCAATCTTTGTAAGCTTTTTGAGCGTTTGAAAGGGAATTCGAATTGGCAATATAGGTTTGGATCTTATTTGGTTAATAGAGCCAAATGTTCAGTTATCAGTATTAATTGCAATTAGTCTAAGTTGGAATGTTGGGCCGCTTGGGTGGGCTGTGAGGTGGGGTCATTCCCTTTCTCGTACTTAGGTTTCCCCCTTGGTCATAATTTTAGAAGCATTTATTTCTAGGATCTTGTGTTGAAAAGGTTTAGAAATGATTATCTTCGTGGAAAATAAGTTTTCTCTCTAAGGGAGGAAGACGAACCCTTGTCATTTGGTCCTCAGTGGTTTCCCAGTCTATTTTCTTTCCTTGTTAGTCCCTGTGAACGTTTGCAATTCCTTGGAGGCAACGCATGCGTGATTTTTTTGTGAGAAGGGGTGGAGGAAGGGAAGGGTTCACATTTGGTTATTTGGGAGATGGTAGCGAGACCGGTAGAGTTTGAGGGTTTGGGTATAGGGAATCTTAGTGTGCACAATTAGGTCTTGTGGGTAAATGGTTAAGCCATTTCTCTCAAGATGTGGCATAAGGTTATTGTGGGTAAGATCCTTTTGATTGGTCTTCGAAGGAGATTTCAAGAGGTACTGCCAAAAATCCATGGAAAACTATCTCTGACAGGTTTCCTTCGTTTCCTAGTTTGTTCATTGTTACGTTGTGATAGGCTGAACACTTATTTCAGAAGACAATTGGCTAGGGGGTAGTTCCCTTTGCTCGTTGTTTTCCTTGACTTACCATCTTTCCTCTTTGAAGTTTTGTTATGTGCTCTATCCTATCGTCTTTTGGGAGTTCTTCGTCTATTTCCCTTGGCCTTAGTTGGCCCTTTTCTAATAGAGAGTCGATTGATGCAGTGGCCCTTTTGGCCTTGCTTAGGTTTTTTGCCATTTAGAAGAAGAGATGTTCGCTTTTGGAGCCTTGATTGAGCTCTCCCATTTTTCCTCTATTTTGGAAAATCAAAATTTCGAAGAAGGTTTATTTTTTTGTTTGTGAAATCTTTCAAGGCAGGGTTATACTCTGGATCGTGCTTAGAGATTTTTGCCCAACTTGATTGGGCCTCAGTGTTGTATCCTTTGCAAGGAAGCAGTCGAGGACTTGGATCATCTCCTATGGTTATGTCAGTATGCTAGATCGATTTGGAGTGGTTTCTTTAGGTTTTTTTTTTGTCTGGTGGCCAAGGAGTTGTAAATCCATGTTGGAGGAGCTTTGTTACCACGTCCTCTCGTGAAAAGGGTTGCCTACTATGGCTTGTTTTCCTGGGTGCTATTGTTTGGTTTGAGGTCTTTGGGGGGGTAGGATTTATAGAGGGTTGAGTGACCTTTAAGGGGTCTTTGGGGTATTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAACTATTTAAATAGCTATTGGATTTTTTTTGTCAGACACGTGTAATAAAGTGTGCATGTCAGGTTCTACGTAATTTTATTAACTGGATATCATTGCTATGCTCTTTGGCATTAAAAGTTTGTCTTGAATATCATTTCTTTATGCTCACTTTTTGGGACTTGGATATTGTTGTTTCTTTTTATTGGGAACTGTTCTACATTTTTTTCTTCTTTTTTTGACGATAAAGGA

mRNA sequence

CTCTTTTTATTTGTCTGATACTCTGTATTGTGCTCTTCTTTCCTCTTTCTGCTCCCTCCTTCGAGGGTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTCCCCCTCTTCTCTATTTTTTTTTTCTCTCTTTTTCTTTGTTTTTTCATTTTCGTCCCAAGACTCCCCACTTCAAGATCTTCGTCTCCTCCATTCAATCTCACTCTTCCTGGAAGATGCAGTATCAGAGGCTTAGACAGCAGGCAATGATGCAGCAGTCTTTGTATCCCCACCCCGGCCTCCTCGCTGCTCCTCAGATAGAGCCCATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTGCATGCCGCAGTGTGTATGTTGGGAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGTATTGGACCCATTGAAGGATGTAAGCTCATTAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTTGATCGCAGATCAGCTGCAGTTGCTATTATTTCTCTCAATGGAAGAAACTTGTTTGGACAACCTATAAAGGTTAATTGGGCATATGCAAGTAGTCAGAGAGAAGACACATCTGGTTGTCATTTTAATATATTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTATCCCAGTTGTTCGGATGCAAGGGTTATGTGGGACCAGAAAACTGGACGGTCGAGGGGATATGGTTTTGTTGCTTTTCGGAATGAACAGGATGCTCAAAGTGCAATTAATGACATAAATGGGACACTTGATCACAGAGAATTGACAAAAGGGTTTGGGAAAGGTTCTCGGCTATTTAGAGTCGCTCAAACACTGAATTTATTTCATCGAAGTCTTAACTACAATGACCTGAATAAGGCATGA

Coding sequence (CDS)

ATGCAGTATCAGAGGCTTAGACAGCAGGCAATGATGCAGCAGTCTTTGTATCCCCACCCCGGCCTCCTCGCTGCTCCTCAGATAGAGCCCATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTGCATGCCGCAGTGTGTATGTTGGGAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGTATTGGACCCATTGAAGGATGTAAGCTCATTAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTTGATCGCAGATCAGCTGCAGTTGCTATTATTTCTCTCAATGGAAGAAACTTGTTTGGACAACCTATAAAGGTTAATTGGGCATATGCAAGTAGTCAGAGAGAAGACACATCTGGTTGTCATTTTAATATATTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTATCCCAGTTGTTCGGATGCAAGGGTTATGTGGGACCAGAAAACTGGACGGTCGAGGGGATATGGTTTTGTTGCTTTTCGGAATGAACAGGATGCTCAAAGTGCAATTAATGACATAAATGGGACACTTGATCACAGAGAATTGACAAAAGGGTTTGGGAAAGGTTCTCGGCTATTTAGAGTCGCTCAAACACTGAATTTATTTCATCGAAGTCTTAACTACAATGACCTGAATAAGGCATGA
Homology
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BLAST of CmoCh12G013640 vs. Swiss-Prot
Match: UBP1_NICPL (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.1e-95
Identity = 171/198 (86.36%), Postives = 187/198 (94.44%), Query Frame = 1 

Query: 1   MQYQRLRQQ---AMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQV 60
           MQ QRL+QQ   A+MQQSLY HPGLLA PQIEPILSGNLPPGFDSS CRSVYVGNIHPQV
Sbjct: 2   MQQQRLKQQQQQALMQQSLY-HPGLLAPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQV 61

Query: 61  TEPLLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNW 120
           TEPLLQEVF+S GP+EGCKLIRK+KSSYGFVDYFDRRSAA+AI++LNGR+LFGQPIKVNW
Sbjct: 62  TEPLLQEVFASTGPLEGCKLIRKDKSSYGFVDYFDRRSAALAIVTLNGRHLFGQPIKVNW 121

Query: 121 AYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGF 180
           AYAS+QREDTS  H+NIFVGDLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSRG+GF
Sbjct: 122 AYASAQREDTSN-HYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGF 181

Query: 181 VAFRNEQDAQSAINDING 196
           V+FRN+Q+AQSAIND+NG
Sbjct: 182 VSFRNQQEAQSAINDLNG 197

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BLAST of CmoCh12G013640 vs. Swiss-Prot
Match: UBP1B_ARATH (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 157/194 (80.93%), Postives = 171/194 (88.14%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q Q + QQA+MQQ    HPGLLA PQIEPI SGNLPPGFD S CRSVYVGNIH QVTEPL
Sbjct: 10  QQQVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPL 69

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVF+  GP+E CKLIRKEKSSYGFV YFDRRSA +AI+SLNGR+LFGQPIKVNWAYAS
Sbjct: 70  LQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYAS 129

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
            QREDTS  HFNIFVGDLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 130 GQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 189

Query: 182 NEQDAQSAINDING 196
           N+QDAQ+AI++I G
Sbjct: 190 NQQDAQTAIDEITG 202

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BLAST of CmoCh12G013640 vs. Swiss-Prot
Match: UBP1C_ARATH (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-85
Identity = 156/214 (72.90%), Postives = 180/214 (84.11%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q   ++QQA+MQQ    HPG+LA PQ+EP+ SGNLPPGFD S CRSVYVGNIH QVTEPL
Sbjct: 15  QQAMMQQQALMQQHSLYHPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPL 74

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQE+F+S GP+E  KLIRK+KSSYGFV YFDRRSAA+AI+SLNGR+LFGQPIKVNWAYA+
Sbjct: 75  LQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYAT 134

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
            QREDTS  HFNIFVGDLSPEVTDATL+  FSV+ SCSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 135 GQREDTSS-HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 194

Query: 182 NEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           N+QDAQ+AIN++NG  L  R++     TKG   G
Sbjct: 195 NQQDAQTAINEMNGKWLSSRQIRCNWATKGATSG 227

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BLAST of CmoCh12G013640 vs. Swiss-Prot
Match: UBP1A_ARATH (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.5e-81
Identity = 146/194 (75.26%), Postives = 170/194 (87.63%), Query Frame = 1 

Query: 4   QRLRQQAMMQQ--SLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 63
           Q + QQAMMQQ  SLY HPG++A PQ+EP+ SGNLPPGFD + CRSVY GNIH QVTE L
Sbjct: 20  QAMIQQAMMQQHPSLY-HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEIL 79

Query: 64  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 123
           LQE+F+S GPIE CKLIRK+KSSYGFV YFDRR A++AI++LNGR++FGQP+KVNWAYA+
Sbjct: 80  LQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYAT 139

Query: 124 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 183
            QREDTS  HFNIFVGDLSPEVTDA LF  FS + SCSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 140 GQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 199

Query: 184 NEQDAQSAINDING 196
           N+QDAQ+AIN++NG
Sbjct: 200 NQQDAQTAINEMNG 211

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BLAST of CmoCh12G013640 vs. Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-36
Identity = 74/158 (46.84%), Postives = 111/158 (70.25%), Query Frame = 1 

Query: 41  DSSACRSVYVGNIHPQVTEPLLQEVFSSIGPIEGCKLIRKEKSS--YGFVDYFDRRSAAV 100
           D    R++YVGN+   VTE L+ ++FS IGP + CK+I +  S+  Y FV++++ R AA 
Sbjct: 4   DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63

Query: 101 AIISLNGRNLFGQPIKVNWAYA-SSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPS 160
           A+ ++NGR + G+ +KVNWA   SSQ++DTS  HF++FVGDLSPE+T   + + F+ +  
Sbjct: 64  ALAAMNGRKILGKEVKVNWATTPSSQKKDTSN-HFHVFVGDLSPEITTEDIKSAFAPFGK 123

Query: 161 CSDARVMWDQKTGRSRGYGFVAFRNEQDAQSAINDING 196
            SDARV+ D  TG+S+GYGFV+F N+ DA++AI  + G
Sbjct: 124 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 160

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BLAST of CmoCh12G013640 vs. TrEMBL
Match: A0A0A0LFH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.6e-106
Identity = 198/215 (92.09%), Postives = 201/215 (93.49%), Query Frame = 1 

Query: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEP 60
           MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTEP
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEP 60

Query: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYA 120
           LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAV+IISLNGRNLFGQPIKVNWAYA
Sbjct: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVSIISLNGRNLFGQPIKVNWAYA 120

Query: 121 SSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180
           SSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF
Sbjct: 121 SSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180

Query: 181 RNEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           RNEQDAQSAINDING  L  R++     TKG   G
Sbjct: 181 RNEQDAQSAINDINGKWLGSRQIRCNWATKGANSG 214

[Close]
BLAST of CmoCh12G013640 vs. TrEMBL
Match: A0A059CN73_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00784 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.8e-97
Identity = 180/214 (84.11%), Postives = 195/214 (91.12%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q QRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVT+ L
Sbjct: 11  QQQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDLL 70

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVFSS G IEGCKLIRKEKSSYGFVDY+DRRSAA++I++LNGR+LFGQPIKVNWAYAS
Sbjct: 71  LQEVFSSTGSIEGCKLIRKEKSSYGFVDYYDRRSAALSIVTLNGRHLFGQPIKVNWAYAS 130

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
           SQREDTSG HFNIFVGDLSPEVTDATLFACFSVY +CSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 131 SQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYSTCSDARVMWDQKTGRSRGFGFVSFR 190

Query: 182 NEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           N+QDAQ+AIND+NG  L  R++     TKG   G
Sbjct: 191 NQQDAQTAINDMNGKWLGSRQIRCNWATKGANSG 223

[Close]
BLAST of CmoCh12G013640 vs. TrEMBL
Match: M5VQ26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006419mg PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.4e-96
Identity = 175/196 (89.29%), Postives = 187/196 (95.41%), Query Frame = 1 

Query: 1   MQYQRLRQQ-AMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTE 60
           MQ QRL+QQ AMMQQSLY HP +LAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTE
Sbjct: 1   MQQQRLKQQQAMMQQSLYQHPAILAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTE 60

Query: 61  PLLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAY 120
           PLLQEVFSS GP+EGCKLIRK+KSSYGFVDYFDRRSAA AI++LNGR+LFGQPIKVNWAY
Sbjct: 61  PLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRRSAAYAIVTLNGRHLFGQPIKVNWAY 120

Query: 121 ASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVA 180
           ASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSRG+GFV+
Sbjct: 121 ASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVS 180

Query: 181 FRNEQDAQSAINDING 196
           FR++QDAQSAIND+NG
Sbjct: 181 FRSQQDAQSAINDLNG 195

[Close]
BLAST of CmoCh12G013640 vs. TrEMBL
Match: A0A059CLW1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00784 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.7e-95
Identity = 180/215 (83.72%), Postives = 195/215 (90.70%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q QRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVT+ L
Sbjct: 11  QQQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDLL 70

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVFSS G IEGCKLIRKEKSSYGFVDY+DRRSAA++I++LNGR+LFGQPIKVNWAYAS
Sbjct: 71  LQEVFSSTGSIEGCKLIRKEKSSYGFVDYYDRRSAALSIVTLNGRHLFGQPIKVNWAYAS 130

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
           SQREDTSG HFNIFVGDLSPEVTDATLFACFSVY +CSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 131 SQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYSTCSDARVMWDQKTGRSRGFGFVSFR 190

Query: 182 N-EQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           N +QDAQ+AIND+NG  L  R++     TKG   G
Sbjct: 191 NQQQDAQTAINDMNGKWLGSRQIRCNWATKGANSG 224

[Close]
BLAST of CmoCh12G013640 vs. TrEMBL
Match: A0A061GSY2_THECC (Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.7e-95
Identity = 172/195 (88.21%), Postives = 184/195 (94.36%), Query Frame = 1 

Query: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEP 60
           MQ QRL+QQAMMQQSLY HPGLL   QIEPILSGNLPPGFDS+ CRSVYVGNIHPQVTEP
Sbjct: 1   MQQQRLKQQAMMQQSLYHHPGLLTGHQIEPILSGNLPPGFDSTTCRSVYVGNIHPQVTEP 60

Query: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYA 120
           LLQEVF S GPIEGCKLI+K+KSSYGFVDYFDRRSAA+AI++LNGR+LFGQPIKVNWAYA
Sbjct: 61  LLQEVFLSTGPIEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHLFGQPIKVNWAYA 120

Query: 121 SSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180
           SSQREDTSG H NIFVGDLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSRG+GFV+F
Sbjct: 121 SSQREDTSG-HHNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVSF 180

Query: 181 RNEQDAQSAINDING 196
           RN+QDAQSAIND+NG
Sbjct: 181 RNQQDAQSAINDLNG 194

[Close]
BLAST of CmoCh12G013640 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-89
Identity = 157/194 (80.93%), Postives = 171/194 (88.14%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q Q + QQA+MQQ    HPGLLA PQIEPI SGNLPPGFD S CRSVYVGNIH QVTEPL
Sbjct: 10  QQQVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPL 69

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVF+  GP+E CKLIRKEKSSYGFV YFDRRSA +AI+SLNGR+LFGQPIKVNWAYAS
Sbjct: 70  LQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYAS 129

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
            QREDTS  HFNIFVGDLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 130 GQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 189

Query: 182 NEQDAQSAINDING 196
           N+QDAQ+AI++I G
Sbjct: 190 NQQDAQTAIDEITG 202

[Close]
BLAST of CmoCh12G013640 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-86
Identity = 156/214 (72.90%), Postives = 180/214 (84.11%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q   ++QQA+MQQ    HPG+LA PQ+EP+ SGNLPPGFD S CRSVYVGNIH QVTEPL
Sbjct: 15  QQAMMQQQALMQQHSLYHPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPL 74

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQE+F+S GP+E  KLIRK+KSSYGFV YFDRRSAA+AI+SLNGR+LFGQPIKVNWAYA+
Sbjct: 75  LQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYAT 134

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
            QREDTS  HFNIFVGDLSPEVTDATL+  FSV+ SCSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 135 GQREDTSS-HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 194

Query: 182 NEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           N+QDAQ+AIN++NG  L  R++     TKG   G
Sbjct: 195 NQQDAQTAINEMNGKWLSSRQIRCNWATKGATSG 227

[Close]
BLAST of CmoCh12G013640 vs. TAIR10
Match: AT1G54080.2 (AT1G54080.2 oligouridylate-binding protein 1A)

HSP 1 Score: 295.8 bits (756), Expect = 2.3e-80
Identity = 146/198 (73.74%), Postives = 170/198 (85.86%), Query Frame = 1 

Query: 4   QRLRQQAMMQQ--SLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 63
           Q + QQAMMQQ  SLY HPG++A PQ+EP+ SGNLPPGFD + CRSVY GNIH QVTE L
Sbjct: 20  QAMIQQAMMQQHPSLY-HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEIL 79

Query: 64  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 123
           LQE+F+S GPIE CKLIRK+KSSYGFV YFDRR A++AI++LNGR++FGQP+KVNWAYA+
Sbjct: 80  LQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYAT 139

Query: 124 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCS----DARVMWDQKTGRSRGYGF 183
            QREDTS  HFNIFVGDLSPEVTDA LF  FS + SCS    DARVMWDQKTGRSRG+GF
Sbjct: 140 GQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGF 199

Query: 184 VAFRNEQDAQSAINDING 196
           V+FRN+QDAQ+AIN++NG
Sbjct: 200 VSFRNQQDAQTAINEMNG 215

[Close]
BLAST of CmoCh12G013640 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-24
Identity = 62/176 (35.23%), Postives = 99/176 (56.25%), Query Frame = 1 

Query: 46  RSVYVGNIHPQVTEPLLQEVFSSIGPIEGCKLIRKEKSS----YGFVDYFDRRSAAVAII 105
           ++++VG++   + E  L   FS  G +   K+IR + +S    YGFV++  R +A   + 
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167

Query: 106 SLNGRNL--FGQPIKVNWAYASS--QREDTSGCHFNIFVGDLSPEVTDATLFACFSV-YP 165
           + +G  +    QP ++NWA  S+  +R   +G   ++FVGDLSP+VTD  L   FS  YP
Sbjct: 168 NYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYP 227

Query: 166 SCSDARVMWDQKTGRSRGYGFVAFRNEQDAQSAINDINGT-LDHRELTKGFGKGSR 212
           S   A+V+ D  TGRS+GYGFV F +E +   A+ ++NG    +R++  G     R
Sbjct: 228 SVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283

[Close]
BLAST of CmoCh12G013640 vs. TAIR10
Match: AT1G49600.1 (AT1G49600.1 RNA-binding protein 47A)

HSP 1 Score: 104.4 bits (259), Expect = 9.9e-23
Identity = 79/243 (32.51%), Postives = 118/243 (48.56%), Query Frame = 1 

Query: 1   MQYQRLRQQAMMQQS---LYPHPGLL----AAPQIEPIL--------------SGNLPPG 60
           MQ       AMMQQ    +YPHP       AA Q  P                S   P G
Sbjct: 52  MQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHPQFQYAAYQQQQQQHHQSQQQPRG 111

Query: 61  FDSSA-CRSVYVGNIHPQVTEPLLQEVFSSIGPIEGCKLIRKEKS----SYGFVDYFDRR 120
                  ++++VG++   + E  L   FS    +   K+IR +++     YGFV++  R 
Sbjct: 112 GSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRS 171

Query: 121 SAAVAIISLNGRNLFG--QPIKVNWAYASS--QREDTSGCHFNIFVGDLSPEVTDATLFA 180
           +A  A+ S +G  +    QP ++NWA  S+  +R   +G   +IFVGDL+P+V+DA L  
Sbjct: 172 AAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLE 231

Query: 181 CFSV-YPSCSDARVMWDQKTGRSRGYGFVAFRNEQDAQSAINDINGTL-DHRELTKGFGK 212
            F+  YPS   A+V+ D  TGRS+GYGFV F +E +   A+ ++NG     R++  G   
Sbjct: 232 TFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIAT 291

[Close]
BLAST of CmoCh12G013640 vs. NCBI nr
Match: gi|700205374|gb|KGN60493.1| (hypothetical protein Csa_2G000020 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 5.2e-106
Identity = 198/215 (92.09%), Postives = 201/215 (93.49%), Query Frame = 1 

Query: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEP 60
           MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTEP
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEP 60

Query: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYA 120
           LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAV+IISLNGRNLFGQPIKVNWAYA
Sbjct: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVSIISLNGRNLFGQPIKVNWAYA 120

Query: 121 SSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180
           SSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF
Sbjct: 121 SSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180

Query: 181 RNEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           RNEQDAQSAINDING  L  R++     TKG   G
Sbjct: 181 RNEQDAQSAINDINGKWLGSRQIRCNWATKGANSG 214

[Close]
BLAST of CmoCh12G013640 vs. NCBI nr
Match: gi|659071491|ref|XP_008460071.1| (PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 5.2e-106
Identity = 198/215 (92.09%), Postives = 201/215 (93.49%), Query Frame = 1 

Query: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEP 60
           MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTEP
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEP 60

Query: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYA 120
           LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAV+IISLNGRNLFGQPIKVNWAYA
Sbjct: 61  LLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVSIISLNGRNLFGQPIKVNWAYA 120

Query: 121 SSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180
           SSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF
Sbjct: 121 SSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAF 180

Query: 181 RNEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           RNEQDAQSAINDING  L  R++     TKG   G
Sbjct: 181 RNEQDAQSAINDINGKWLGSRQIRCNWATKGANSG 214

[Close]
BLAST of CmoCh12G013640 vs. NCBI nr
Match: gi|778665474|ref|XP_011648572.1| (PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 9.1e-103
Identity = 193/214 (90.19%), Postives = 197/214 (92.06%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q Q  +QQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTEPL
Sbjct: 526 QLQSQQQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPL 585

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAV+IISLNGRNLFGQPIKVNWAYAS
Sbjct: 586 LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVSIISLNGRNLFGQPIKVNWAYAS 645

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
           SQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR
Sbjct: 646 SQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 705

Query: 182 NEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           NEQDAQSAINDING  L  R++     TKG   G
Sbjct: 706 NEQDAQSAINDINGKWLGSRQIRCNWATKGANSG 738

[Close]
BLAST of CmoCh12G013640 vs. NCBI nr
Match: gi|702292161|ref|XP_010047456.1| (PREDICTED: oligouridylate-binding protein 1-like [Eucalyptus grandis])

HSP 1 Score: 361.7 bits (927), Expect = 9.7e-97
Identity = 180/214 (84.11%), Postives = 195/214 (91.12%), Query Frame = 1 

Query: 2   QYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTEPL 61
           Q QRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVT+ L
Sbjct: 11  QQQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDLL 70

Query: 62  LQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAYAS 121
           LQEVFSS G IEGCKLIRKEKSSYGFVDY+DRRSAA++I++LNGR+LFGQPIKVNWAYAS
Sbjct: 71  LQEVFSSTGSIEGCKLIRKEKSSYGFVDYYDRRSAALSIVTLNGRHLFGQPIKVNWAYAS 130

Query: 122 SQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFR 181
           SQREDTSG HFNIFVGDLSPEVTDATLFACFSVY +CSDARVMWDQKTGRSRG+GFV+FR
Sbjct: 131 SQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYSTCSDARVMWDQKTGRSRGFGFVSFR 190

Query: 182 NEQDAQSAINDINGT-LDHREL-----TKGFGKG 210
           N+QDAQ+AIND+NG  L  R++     TKG   G
Sbjct: 191 NQQDAQTAINDMNGKWLGSRQIRCNWATKGANSG 223

[Close]
BLAST of CmoCh12G013640 vs. NCBI nr
Match: gi|595804495|ref|XP_007202165.1| (hypothetical protein PRUPE_ppa006419mg [Prunus persica])

HSP 1 Score: 359.0 bits (920), Expect = 6.3e-96
Identity = 175/196 (89.29%), Postives = 187/196 (95.41%), Query Frame = 1 

Query: 1   MQYQRLRQQ-AMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSACRSVYVGNIHPQVTE 60
           MQ QRL+QQ AMMQQSLY HP +LAAPQIEPILSGNLPPGFDSS CRSVYVGNIHPQVTE
Sbjct: 1   MQQQRLKQQQAMMQQSLYQHPAILAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTE 60

Query: 61  PLLQEVFSSIGPIEGCKLIRKEKSSYGFVDYFDRRSAAVAIISLNGRNLFGQPIKVNWAY 120
           PLLQEVFSS GP+EGCKLIRK+KSSYGFVDYFDRRSAA AI++LNGR+LFGQPIKVNWAY
Sbjct: 61  PLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRRSAAYAIVTLNGRHLFGQPIKVNWAY 120

Query: 121 ASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVA 180
           ASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSRG+GFV+
Sbjct: 121 ASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVS 180

Query: 181 FRNEQDAQSAINDING 196
           FR++QDAQSAIND+NG
Sbjct: 181 FRSQQDAQSAINDLNG 195

The following BLAST results are available for this feature:
BLAST of CmoCh12G013640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UBP1_NICPL3.1e-9586.36Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1[more]
UBP1B_ARATH1.1e-8780.93Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1[more]
UBP1C_ARATH5.0e-8572.90Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1[more]
UBP1A_ARATH7.5e-8175.26Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1[more]
TIAR_HUMAN1.9e-3646.84Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1[more]
BLAST of CmoCh12G013640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFH4_CUCSA3.6e-10692.09Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1[more]
A0A059CN73_EUCGR6.8e-9784.11Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00784 PE=4 SV=1[more]
M5VQ26_PRUPE4.4e-9689.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006419mg PE=4 SV=1[more]
A0A059CLW1_EUCGR1.7e-9583.72Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00784 PE=4 SV=1[more]
A0A061GSY2_THECC3.7e-9588.21Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=... [more]
BLAST of CmoCh12G013640 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17370.16.1e-8980.93 oligouridylate binding protein 1B[more]
AT3G14100.12.8e-8672.90 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G54080.22.3e-8073.74 oligouridylate-binding protein 1A[more]
AT3G19130.15.2e-2435.23 RNA-binding protein 47B[more]
AT1G49600.19.9e-2332.51 RNA-binding protein 47A[more]
BLAST of CmoCh12G013640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205374|gb|KGN60493.1|5.2e-10692.09hypothetical protein Csa_2G000020 [Cucumis sativus][more]
gi|659071491|ref|XP_008460071.1|5.2e-10692.09PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo][more]
gi|778665474|ref|XP_011648572.1|9.1e-10390.19PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus][more]
gi|702292161|ref|XP_010047456.1|9.7e-9784.11PREDICTED: oligouridylate-binding protein 1-like [Eucalyptus grandis][more]
gi|595804495|ref|XP_007202165.1|6.3e-9689.29hypothetical protein PRUPE_ppa006419mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G013640.1CmoCh12G013640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 134..196
score: 2.7E-17coord: 48..114
score: 8.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 133..205
score: 1.1E-18coord: 47..116
score: 2.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 46..120
score: 15.733coord: 132..220
score: 15
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 46..127
score: 2.3E-22coord: 132..196
score: 9.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 45..196
score: 4.73
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 24..195
score: 2.9E
NoneNo IPR availablePANTHERPTHR24012:SF379SUBFAMILY NOT NAMEDcoord: 24..195
score: 2.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G013640CmaCh12G013340Cucurbita maxima (Rimu)cmacmoB177
CmoCh12G013640Cla016871Watermelon (97103) v1cmowmB159
CmoCh12G013640ClCG11G001340Watermelon (Charleston Gray)cmowcgB137
CmoCh12G013640Lsi11G001470Bottle gourd (USVL1VR-Ls)cmolsiB150
CmoCh12G013640Cp4.1LG07g10630Cucurbita pepo (Zucchini)cmocpeB176
CmoCh12G013640Cp4.1LG11g11930Cucurbita pepo (Zucchini)cmocpeB147
CmoCh12G013640MELO3C004666.2Melon (DHL92) v3.6.1cmomedB177
CmoCh12G013640Cla97C11G207720Watermelon (97103) v2cmowmbB159
CmoCh12G013640Bhi06G001366Wax gourdcmowgoB0188
CmoCh12G013640Carg10769Silver-seed gourdcarcmoB0776
CmoCh12G013640Carg18653Silver-seed gourdcarcmoB1207
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G013640CmoCh05G014240Cucurbita moschata (Rifu)cmocmoB148
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G013640Melon (DHL92) v3.5.1cmomeB161
CmoCh12G013640Watermelon (Charleston Gray)cmowcgB147
CmoCh12G013640Watermelon (97103) v1cmowmB142
CmoCh12G013640Cucurbita pepo (Zucchini)cmocpeB160
CmoCh12G013640Cucurbita pepo (Zucchini)cmocpeB170
CmoCh12G013640Cucumber (Gy14) v2cgybcmoB178
CmoCh12G013640Melon (DHL92) v3.6.1cmomedB180
CmoCh12G013640Silver-seed gourdcarcmoB0130
CmoCh12G013640Cucumber (Chinese Long) v3cmocucB0192
CmoCh12G013640Cucurbita moschata (Rifu)cmocmoB080
CmoCh12G013640Cucumber (Gy14) v1cgycmoB0281
CmoCh12G013640Cucurbita maxima (Rimu)cmacmoB080
CmoCh12G013640Cucurbita maxima (Rimu)cmacmoB121
CmoCh12G013640Wild cucumber (PI 183967)cmocpiB166