CmoCh12G013420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G013420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionAcco20
LocationCmo_Chr12 : 11630632 .. 11631704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCGCCGTGACGCTCACATGTTCTTCATCGATCCAAACCTCTTCTCTTTATCTCCAAATTTCCTAGTGTTATAAAATTTCAAATAATCCTCAAACGTATAGCCACCAGGATACAGAGCCTCCGCCGCCGGTGAAATAACAGCGTCGCTCGCCGGATTATAAAACGTAGCAATCGACAGCCGACTCCCCTCCTTCTCCGCCAAAACGCGGTGCAAAACGCTCTTATATTTGCCGTTGGTCAGAACCTCGATTTGGTCGCCGATGTTGACGAAAATGGCGTTGTTCTTGGACGGCGGGATTTTGAACCACTCGCCGTCTTTCTGGAACTCCAGTCCCGGGACTTTGTCGTCTTGTAGTAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCTCGGAGCCCTCTCACGAGCTCCGGCAGAGGGCATTCTGGGTATTTCGCTACTTTTGTTCCGACAGAAGGCCCTTTAGTTCCATTGAATAGCTGCTTAATATGTGTCTTTTGCAGGCCAAGGTTCTCGCACATTAATTCTGCAAGCTTCTCTGCTATCATTACCAGCTGAGGTATATACTCTTCTTCCATTGCTTTGCTGTTCGTCTATGATTCGTTAGTTCCTTCACAAAATATGATTTAATTTAGCTAATTTAGAAGGGGAAATTACCAAAGATGATCCGAGATGTTGGGAAATCGAGAGATATTAGAGGTTGGTTTATGGGAAATGAAGAACATCGATTCCCAATCCACATCAGATAAGGGAATTTTGCCCAAGTTTTTGGCCATTTCTGAATCATAAAACTTGTCTTTCATTGTCTCATCATAGTGTGCGTTCACCAATAGCTTCACCTTCTCCAACACAGCTTCTTCAATTCCATGATTCTCTATCTGCGCAACAAGAACACATATCCATTTACATGATGAACACGAAGAACAGATATTCAAAAATATGAAGATGGTACCATAAAGAAGCCCCAATTGAGGCAAGCGTCGTGAAGGACGGACAAGGCTCTGGCCCTGTTGTCTCCGTTCACCTCACTGAAATCAATGGTGGGGATCTTCATCTTCATACCCAAGTGTAG

mRNA sequence

AAAGCGCCGTGACGCTCACATGTTCTTCATCGATCCAAACCTCTTCTCTTTATCTCCAAATTTCCTAGTGTTATAAAATTTCAAATAATCCTCAAACGTATAGCCACCAGGATACAGAGCCTCCGCCGCCGGTGAAATAACAGCGTCGCTCGCCGGATTATAAAACGTAGCAATCGACAGCCGACTCCCCTCCTTCTCCGCCAAAACGCGGTGCAAAACGCTCTTATATTTGCCGTTGGTCAGAACCTCGATTTGGTCGCCGATGTTGACGAAAATGGCGTTGTTCTTGGACGGCGGGATTTTGAACCACTCGCCGTCTTTCTGGAACTCCAGTCCCGGGACTTTGTCGTCTTGTAGTAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCTCGGAGCCCTCTCACGAGCTCCGGCAGAGGGCATTCTGGATGGTACCATAAAGAAGCCCCAATTGAGGCAAGCGTCGTGAAGGACGGACAAGGCTCTGGCCCTGTTGTCTCCGTTCACCTCACTGAAATCAATGGTGGGGATCTTCATCTTCATACCCAAGTGTAG

Coding sequence (CDS)

ATGTTGACGAAAATGGCGTTGTTCTTGGACGGCGGGATTTTGAACCACTCGCCGTCTTTCTGGAACTCCAGTCCCGGGACTTTGTCGTCTTGTAGTAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCTCGGAGCCCTCTCACGAGCTCCGGCAGAGGGCATTCTGGATGGTACCATAAAGAAGCCCCAATTGAGGCAAGCGTCGTGAAGGACGGACAAGGCTCTGGCCCTGTTGTCTCCGTTCACCTCACTGAAATCAATGGTGGGGATCTTCATCTTCATACCCAAGTGTAG
Homology
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BLAST of CmoCh12G013420 vs. TrEMBL
Match: A0A0A9M9T8_ARUDO (Acco20 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 1  MLTKMALFLDGGILNHSPSFWNSSPGTLSSCSRRMIPPASVCSRSPLTSSGRGHSGW 58
          MLT MA  + GG   HSPS  +  P T SS + RM+PPASVC+R P T SGRGH G+
Sbjct: 31 MLTTMAWRM-GGTSTHSPSLSSCRPLTWSSWNSRMMPPASVCARRPSTRSGRGHGGY 86

The following BLAST results are available for this feature:
BLAST of CmoCh12G013420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G013420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9M9T8_ARUDO5.1e-0656.14Acco20 OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh12G013420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G013420 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G013420.1CmoCh12G013420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score:

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G013420Wild cucumber (PI 183967)cmocpiB145
CmoCh12G013420Wild cucumber (PI 183967)cmocpiB156
CmoCh12G013420Cucumber (Chinese Long) v2cmocuB145
CmoCh12G013420Cucumber (Chinese Long) v2cmocuB155
CmoCh12G013420Melon (DHL92) v3.5.1cmomeB141
CmoCh12G013420Melon (DHL92) v3.5.1cmomeB161
CmoCh12G013420Melon (DHL92) v3.5.1cmomeB169
CmoCh12G013420Watermelon (Charleston Gray)cmowcgB131
CmoCh12G013420Watermelon (Charleston Gray)cmowcgB147
CmoCh12G013420Watermelon (Charleston Gray)cmowcgB160
CmoCh12G013420Watermelon (97103) v1cmowmB142
CmoCh12G013420Watermelon (97103) v1cmowmB144
CmoCh12G013420Watermelon (97103) v1cmowmB159
CmoCh12G013420Watermelon (97103) v1cmowmB166
CmoCh12G013420Cucurbita pepo (Zucchini)cmocpeB147
CmoCh12G013420Cucurbita pepo (Zucchini)cmocpeB153
CmoCh12G013420Cucurbita pepo (Zucchini)cmocpeB160
CmoCh12G013420Cucurbita pepo (Zucchini)cmocpeB170
CmoCh12G013420Cucurbita pepo (Zucchini)cmocpeB176
CmoCh12G013420Bottle gourd (USVL1VR-Ls)cmolsiB146
CmoCh12G013420Bottle gourd (USVL1VR-Ls)cmolsiB169
CmoCh12G013420Cucumber (Gy14) v2cgybcmoB051
CmoCh12G013420Cucumber (Gy14) v2cgybcmoB165
CmoCh12G013420Cucumber (Gy14) v2cgybcmoB170
CmoCh12G013420Melon (DHL92) v3.6.1cmomedB155
CmoCh12G013420Melon (DHL92) v3.6.1cmomedB177
CmoCh12G013420Melon (DHL92) v3.6.1cmomedB180
CmoCh12G013420Silver-seed gourdcarcmoB0130
CmoCh12G013420Silver-seed gourdcarcmoB0279
CmoCh12G013420Silver-seed gourdcarcmoB0775
CmoCh12G013420Silver-seed gourdcarcmoB0776
CmoCh12G013420Silver-seed gourdcarcmoB1207
CmoCh12G013420Cucumber (Chinese Long) v3cmocucB0168
CmoCh12G013420Cucumber (Chinese Long) v3cmocucB0182
CmoCh12G013420Cucumber (Chinese Long) v3cmocucB0184
CmoCh12G013420Watermelon (97103) v2cmowmbB154
CmoCh12G013420Watermelon (97103) v2cmowmbB164
CmoCh12G013420Watermelon (97103) v2cmowmbB176
CmoCh12G013420Wax gourdcmowgoB0178
CmoCh12G013420Wax gourdcmowgoB0227
CmoCh12G013420Cucurbita moschata (Rifu)cmocmoB050
CmoCh12G013420Cucurbita moschata (Rifu)cmocmoB080
CmoCh12G013420Cucurbita moschata (Rifu)cmocmoB143
CmoCh12G013420Cucurbita moschata (Rifu)cmocmoB148
CmoCh12G013420Cucumber (Gy14) v1cgycmoB0281
CmoCh12G013420Cucumber (Gy14) v1cgycmoB0284
CmoCh12G013420Cucurbita maxima (Rimu)cmacmoB080
CmoCh12G013420Cucurbita maxima (Rimu)cmacmoB121
CmoCh12G013420Cucurbita maxima (Rimu)cmacmoB177
CmoCh12G013420Cucurbita maxima (Rimu)cmacmoB763