CmoCh12G011360 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G011360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Aldo/keto reductase family oxidoreductase
Location	Cmo_Chr12 : 10352431 .. 10354084 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATTATCCTTCAAAATCTCTCCTCATAGTCCCGTACGTTGACTTCAAGAATAAACAGTCTGCTAATCTTATCAACTGCTAGGTTTTTCTTACTCAGATCTTGAAAATGGTTGAGAGAATTTAGTAATTGGAAGGGAAACAAAAATCCCTTCTAGTGGGGTTAACACATTTCGCTGCTTCATTGAGACCGTTTGATAACCCTTTAGTACGTACTAAATACTAAAAATCCCTTCTATATGTTCCGATTTGAAGTGAAAGACTGTGATGCCAATGATGAATAAATATATATTATACTTTCAATTTGAAGTGTAGACTGTGATGTAAGCAATGATGAATGTCATTTTGTTGATTCCCCACGTGATATTCCCTCTACTCTTGGTCCTATATATTGAGGATTGGTTCAACAGACTACTAAAAGAATTCACTAACTTTCTGCTCACAAGATTTAGAGCGAAAATAATGGCAGAGGGGCAAGGAGTTCAGATTCCCAGAGTGCAACTTGGAAGCCAGGGACTTGAGGTAAAACTCATATGCTTTTAGCTGAATGTGAGATCACATGTCGGTTGAAGAGGGGAATGAAGTATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGATTTTAAAACCTTGATGGGAAGTCCGAAAGGGAAAGCCCAAAAAGGACAATATTTGCTAGCGGTGGGCTTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGGGCGGTGTGCCAGCGAGAACGCTGGACTCCCTAGAGCGTAGATTGTGAGATCCCACATCGATTGGAGAAGGGAACGAAGTATTGCTTATAAGGGTGTGGAAACCCCGCCCTAGTAGACACGTTTTAAAATCTTGAGGGGAAGCCCAGGAAAAATTTAAATAGAACAATATCTGCTAGAAGTAGTAGACCCATGGTGGGTCAGCAAACCGGGCCTACGGTTCTAATGATTCTGTAGATACAGAAAGAGCTTCACTAATTGCTCGGTTTTCTATTTCTTTTTTCAGAAAATTGATATTAAAACGTTAACTTTAGGCTTTGTGAATTAAGGACTCATATGATTCTCCTTCCTCGACTTTGGTTCTCTCTCTTGGTTTTCAATAACACAGAAACTTGCTTGGTCAGGTTTTCCTTTTATTTGAATTCGTAGAGTAGGCAGAGACCTAACTATACGATCGGAGTTTAGACACGTAAACCATGGGTCCCCCGAATATCCATCATCAACCAACCCCCTTTCCTGGCTAAGAAGTAGAGAAGGACCTAAGAACTAAATAAACAAAGCCGTAAAAGTTTCGTGACTAAATTTATAAATTTACGGAAGTTATAGCACAAGAACAAAGATGGGAAATCTTTCATAAACGTATTATTTTGAGCTATCTTCTACCTGCTGCATACAAATTCCCATACAGATACTTTCTTTTCTTTTCGGGACTTGTTCTTGTCTTTTTTTGGTACTAGGCACAACCAAGATAAAAAATTTGGAGCAGAACATCGGTTCCTTGACAGTGAAGCTCGACAGAGACGACCTGAACGAGATTTCCGAGGCAGTACCCGAAAGCGAGGTAGCTGGAAATGGAAATTATGATAGCTTGATGTATGCAACATGGAAATATGCTAACACACCTCCAAAAATGAATGACATCTGA

mRNA sequence

ATGGAAGCATTATCCTTCAAAATCTCTCCTCATAGTCCCAAAATTGATATTAAAACGCTTTGTGAATTAAGGACTCATATGATTCTCCTTCCTCGACTTTGGTTCTCTCTCTTGGTTTTCAATAACACAGAAACTTGCTTGGTCAGAGTAGGCAGAGACCTAACTATACGATCGGAGTTTAGACACGTAAACCATGGGTCCCCCGAATATCCATCATCAACCAACCCCCTTTCCTGGCTAAGAAGCACAACCAAGATAAAAAATTTGGAGCAGAACATCGGTTCCTTGACAGTGAAGCTCGACAGAGACGACCTGAACGAGATTTCCGAGGCAGTACCCGAAAGCGAGGTAGCTGGAAATGGAAATTATGATAGCTTGATGTATGCAACATGGAAATATGCTAACACACCTCCAAAAATGAATGACATCTGA

Coding sequence (CDS)

ATGGAAGCATTATCCTTCAAAATCTCTCCTCATAGTCCCAAAATTGATATTAAAACGCTTTGTGAATTAAGGACTCATATGATTCTCCTTCCTCGACTTTGGTTCTCTCTCTTGGTTTTCAATAACACAGAAACTTGCTTGGTCAGAGTAGGCAGAGACCTAACTATACGATCGGAGTTTAGACACGTAAACCATGGGTCCCCCGAATATCCATCATCAACCAACCCCCTTTCCTGGCTAAGAAGCACAACCAAGATAAAAAATTTGGAGCAGAACATCGGTTCCTTGACAGTGAAGCTCGACAGAGACGACCTGAACGAGATTTCCGAGGCAGTACCCGAAAGCGAGGTAGCTGGAAATGGAAATTATGATAGCTTGATGTATGCAACATGGAAATATGCTAACACACCTCCAAAAATGAATGACATCTGA

Homology

[Close]

BLAST of CmoCh12G011360 vs. Swiss-Prot
Match: AKR1_SOYBN (Probable aldo-keto reductase 1 OS=Glycine max GN=AKR1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-13
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EI EAVP  +VAG   Y+ L + +WKYANTPPK + 
Sbjct: 284 TTKIKNLDQNIGALAVKLSEKDLREIFEAVPIGDVAGGRYYNGLDHFSWKYANTPPKDSK 343

Query: 143 I 144
           I
Sbjct: 344 I 344

[Close]

BLAST of CmoCh12G011360 vs. Swiss-Prot
Match: PERR_RAUSE (Perakine reductase OS=Rauvolfia serpentina GN=PR PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPP 139
           TTKIKNL  N+G+L VKL ++DL EIS+AVP  EVAG   ++ +    WK+ANTPP
Sbjct: 280 TTKIKNLHNNVGALKVKLTKEDLKEISDAVPLDEVAGESIHEVIAVTNWKFANTPP 335

[Close]

BLAST of CmoCh12G011360 vs. TrEMBL
Match: A0A061F182_THECC (NAD(P)-linked oxidoreductase superfamily protein OS=Theobroma cacao GN=TCM_026375 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPK 140
           TTKIKNL+ NIGSLTVKL  +DL EIS+AVP  EVAG+ NYDS+  A+WK+ANTPPK
Sbjct: 288 TTKIKNLDHNIGSLTVKLTAEDLKEISDAVPIDEVAGDRNYDSMRKASWKFANTPPK 344

[Close]

BLAST of CmoCh12G011360 vs. TrEMBL
Match: A0A0B2RAB6_GLYSO (Putative aldo-keto reductase 1 OS=Glycine soja GN=glysoja_035583 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EISEAVP  +VAG  +Y  L + TWKYANTPPK + 
Sbjct: 283 TTKIKNLDQNIGALAVKLSEKDLREISEAVPIGDVAGGIHYYGLEHITWKYANTPPKDSS 342

Query: 143 I 144
           I
Sbjct: 343 I 343

[Close]

BLAST of CmoCh12G011360 vs. TrEMBL
Match: I1JRP8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G248500 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EISEAVP  +VAG  +Y  L + TWKYANTPPK + 
Sbjct: 284 TTKIKNLDQNIGALAVKLSEKDLREISEAVPIGDVAGGIHYYGLEHITWKYANTPPKDSS 343

Query: 143 I 144
           I
Sbjct: 344 I 344

[Close]

BLAST of CmoCh12G011360 vs. TrEMBL
Match: K7KGW6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G248500 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EISEAVP  +VAG  +Y  L + TWKYANTPPK + 
Sbjct: 186 TTKIKNLDQNIGALAVKLSEKDLREISEAVPIGDVAGGIHYYGLEHITWKYANTPPKDSS 245

Query: 143 I 144
           I
Sbjct: 246 I 246

[Close]

BLAST of CmoCh12G011360 vs. TrEMBL
Match: I1LBL0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G161700 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPK 140
           TTKIKNL+ NIGSL VKL  DDL EI+EA+P SEV G+   D+ M  +WK+ANTPPK
Sbjct: 281 TTKIKNLDNNIGSLKVKLSNDDLREITEAIPISEVVGDRTVDTFMRCSWKFANTPPK 337

[Close]

BLAST of CmoCh12G011360 vs. NCBI nr
Match: gi|659120475|ref|XP_008460212.1| (PREDICTED: probable aldo-keto reductase 1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL++NIGSLTV+L++DDLNEISEAVPESEVAGN  YD++ +ATWKYA T PK+ND
Sbjct: 286 TTKIKNLDENIGSLTVRLNKDDLNEISEAVPESEVAGNRTYDNMAHATWKYAIT-PKVND 345

Query: 143 I 144
           I
Sbjct: 346 I 345

[Close]

BLAST of CmoCh12G011360 vs. NCBI nr
Match: gi|449445274|ref|XP_004140398.1| (PREDICTED: probable aldo-keto reductase 1 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIGSLTV+L++DD NEISEAVPESEVAGN  YD++++ TWKYA T PK+ND
Sbjct: 286 TTKIKNLDQNIGSLTVRLNKDDRNEISEAVPESEVAGNRTYDNMVHTTWKYAIT-PKVND 345

Query: 143 I 144
           I
Sbjct: 346 I 345

[Close]

BLAST of CmoCh12G011360 vs. NCBI nr
Match: gi|590642725|ref|XP_007030598.1| (NAD(P)-linked oxidoreductase superfamily protein [Theobroma cacao])

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-14
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPK 140
           TTKIKNL+ NIGSLTVKL  +DL EIS+AVP  EVAG+ NYDS+  A+WK+ANTPPK
Sbjct: 288 TTKIKNLDHNIGSLTVKLTAEDLKEISDAVPIDEVAGDRNYDSMRKASWKFANTPPK 344

[Close]

BLAST of CmoCh12G011360 vs. NCBI nr
Match: gi|947120509|gb|KRH68758.1| (hypothetical protein GLYMA_03G248500 [Glycine max])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EISEAVP  +VAG  +Y  L + TWKYANTPPK + 
Sbjct: 186 TTKIKNLDQNIGALAVKLSEKDLREISEAVPIGDVAGGIHYYGLEHITWKYANTPPKDSS 245

Query: 143 I 144
           I
Sbjct: 246 I 246

[Close]

BLAST of CmoCh12G011360 vs. NCBI nr
Match: gi|734400472|gb|KHN31476.1| (Putative aldo-keto reductase 1 [Glycine soja])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 83  TTKIKNLEQNIGSLTVKLDRDDLNEISEAVPESEVAGNGNYDSLMYATWKYANTPPKMND 142
           TTKIKNL+QNIG+L VKL   DL EISEAVP  +VAG  +Y  L + TWKYANTPPK + 
Sbjct: 283 TTKIKNLDQNIGALAVKLSEKDLREISEAVPIGDVAGGIHYYGLEHITWKYANTPPKDSS 342

Query: 143 I 144
           I
Sbjct: 343 I 343

The following BLAST results are available for this feature:

BLAST of CmoCh12G011360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AKR1_SOYBN	1.8e-13	62.30	Probable aldo-keto reductase 1 OS=Glycine max GN=AKR1 PE=2 SV=1	[more]
PERR_RAUSE	1.7e-11	57.14	Perakine reductase OS=Rauvolfia serpentina GN=PR PE=1 SV=1	[more]

BLAST of CmoCh12G011360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061F182_THECC	3.4e-14	71.93	NAD(P)-linked oxidoreductase superfamily protein OS=Theobroma cacao GN=TCM_02637...	[more]
A0A0B2RAB6_GLYSO	1.4e-12	65.57	Putative aldo-keto reductase 1 OS=Glycine soja GN=glysoja_035583 PE=4 SV=1	[more]
I1JRP8_SOYBN	1.4e-12	65.57	Uncharacterized protein OS=Glycine max GN=GLYMA_03G248500 PE=4 SV=1	[more]
K7KGW6_SOYBN	1.4e-12	65.57	Uncharacterized protein OS=Glycine max GN=GLYMA_03G248500 PE=4 SV=1	[more]
I1LBL0_SOYBN	4.1e-12	64.91	Uncharacterized protein OS=Glycine max GN=GLYMA_10G161700 PE=4 SV=1	[more]

BLAST of CmoCh12G011360 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G011360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120475\|ref\|XP_008460212.1\|	3.6e-17	77.05	PREDICTED: probable aldo-keto reductase 1 [Cucumis melo]	[more]
gi\|449445274\|ref\|XP_004140398.1\|	1.4e-16	75.41	PREDICTED: probable aldo-keto reductase 1 [Cucumis sativus]	[more]
gi\|590642725\|ref\|XP_007030598.1\|	4.8e-14	71.93	NAD(P)-linked oxidoreductase superfamily protein [Theobroma cacao]	[more]
gi\|947120509\|gb\|KRH68758.1\|	2.0e-12	65.57	hypothetical protein GLYMA_03G248500 [Glycine max]	[more]
gi\|734400472\|gb\|KHN31476.1\|	2.0e-12	65.57	Putative aldo-keto reductase 1 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001395	Aldo/keto reductase/potassium channel subunit beta
IPR023210	NADP_OxRdtase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011360.1	CmoCh12G011360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001395	Aldo/keto reductase/potassium channel subunit beta	PANTHER	PTHR11732	ALDO/KETO REDUCTASE	coord: 83..143 score: 1.4
IPR023210	NADP-dependent oxidoreductase domain	GENE3D	G3DSA:3.20.20.100		coord: 78..121 score: 2.
None	No IPR available	PANTHER	PTHR11732:SF253	SUBFAMILY NOT NAMED	coord: 83..143 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G011360	Cp4.1LG07g09610	Cucurbita pepo (Zucchini)	cmocpeB175

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G011360	Silver-seed gourd	carcmoB0404
CmoCh12G011360	Silver-seed gourd	carcmoB0973
CmoCh12G011360	Cucumber (Chinese Long) v3	cmocucB0185
CmoCh12G011360	Cucumber (Chinese Long) v3	cmocucB0220
CmoCh12G011360	Watermelon (97103) v2	cmowmbB161
CmoCh12G011360	Watermelon (97103) v2	cmowmbB188
CmoCh12G011360	Wax gourd	cmowgoB0171
CmoCh12G011360	Cucurbita moschata (Rifu)	cmocmoB086
CmoCh12G011360	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh12G011360	Cucumber (Gy14) v1	cgycmoB0359
CmoCh12G011360	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G011360	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G011360	Wild cucumber (PI 183967)	cmocpiB159
CmoCh12G011360	Wild cucumber (PI 183967)	cmocpiB190
CmoCh12G011360	Cucumber (Chinese Long) v2	cmocuB157
CmoCh12G011360	Cucumber (Chinese Long) v2	cmocuB187
CmoCh12G011360	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G011360	Watermelon (Charleston Gray)	cmowcgB126
CmoCh12G011360	Watermelon (Charleston Gray)	cmowcgB144
CmoCh12G011360	Watermelon (97103) v1	cmowmB132
CmoCh12G011360	Watermelon (97103) v1	cmowmB156
CmoCh12G011360	Cucurbita pepo (Zucchini)	cmocpeB141
CmoCh12G011360	Cucurbita pepo (Zucchini)	cmocpeB142
CmoCh12G011360	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G011360	Bottle gourd (USVL1VR-Ls)	cmolsiB142
CmoCh12G011360	Bottle gourd (USVL1VR-Ls)	cmolsiB148
CmoCh12G011360	Cucumber (Gy14) v2	cgybcmoB170
CmoCh12G011360	Cucumber (Gy14) v2	cgybcmoB891
CmoCh12G011360	Melon (DHL92) v3.6.1	cmomedB177