CmoCh12G008230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone H2B
Location	Cmo_Chr12 : 7419649 .. 7420074 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTCCGCCTTGTTCTTCCTGGCGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCTGTTACTAAGTTTACTAGCTCTTAG

Homology

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BLAST of CmoCh12G008230 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.3e-59
Identity = 133/147 (90.48%), Postives = 138/147 (93.88%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKA--EKAPAEKKPRAEKKLPKDGA----DKKKKKAKKSVETY 60
           MAPKAEKKPAEKKPAEEKKA  EKAPAEKKP+A KKLPK+G     DKKKK+ KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 142
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh12G008230 vs. Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-58
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD-GADKKKKKAKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKAE+ PAEKKP+A KKLPKD GADKKKKK+KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of CmoCh12G008230 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKK---AEKAPAEKKPRAEKKLPKDGA----DKKKKKAKKSVET 60
           MAPK EKKPAEKKPAEEKK   AEKAPAEKKP+A KKLPK+G     +KKKK++KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh12G008230 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh12G008230 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 224.2 bits (570), Expect = 9.2e-58
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-61
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230 vs. TrEMBL
Match: I1SN83_HEVBR (Histone H2B OS=Hevea brasiliensis GN=H2B1 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-61
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG---ADKKKKKAKKSVETYKIY 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG   ADKKKK+ KKSVETYKIY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGSAADKKKKRTKKSVETYKIY 60

Query: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 120
           IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRL
Sbjct: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 120

Query: 121 VLPGELAKHAVSEGTKAVTKFTSS 142
           VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VLPGELAKHAVSEGTKAVTKFTSS 144

[Close]

BLAST of CmoCh12G008230 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-60
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPKD +DKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CmoCh12G008230 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DK+KK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKA+KAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-59
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmoCh12G008230 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 224.2 bits (570), Expect = 5.2e-59
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 2.6e-58
Identity = 132/150 (88.00%), Postives = 135/150 (90.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh12G008230 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-57
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAE------EKKAEKAPAEKKPRAEKKLPKD----GADKKKKKAKKS 60
           MAPKA KKPAEKKPAE      EK AEKAPAEKKP+A KKLPK+    G +KKKK+ KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmoCh12G008230 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 218.0 bits (554), Expect = 3.7e-57
Identity = 129/148 (87.16%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKLP-KDGADKKKKKAKKSVET 60
           MAP+AEKKPAEKK A      E K AEKAPAEKKP+A KKLP K+  DKKKK++KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh12G008230 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230 vs. NCBI nr
Match: gi|312985271|gb|ADR30786.1| (histone H2B1 [Hevea brasiliensis])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG---ADKKKKKAKKSVETYKIY 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG   ADKKKK+ KKSVETYKIY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGSAADKKKKRTKKSVETYKIY 60

Query: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 120
           IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRL
Sbjct: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 120

Query: 121 VLPGELAKHAVSEGTKAVTKFTSS 142
           VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VLPGELAKHAVSEGTKAVTKFTSS 144

[Close]

BLAST of CmoCh12G008230 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPKD +DKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CmoCh12G008230 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKA+KAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of CmoCh12G008230 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DK+KK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of CmoCh12G008230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B_GOSHI	8.3e-59	90.48	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B1_SOLLC	1.4e-58	91.55	Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4	[more]
H2B1_MEDTR	3.1e-58	89.19	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B7_ARATH	3.1e-58	91.72	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B11_ARATH	9.2e-58	88.67	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]

BLAST of CmoCh12G008230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2SV51_GOSRA	8.1e-61	95.04	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
I1SN83_HEVBR	8.1e-61	95.83	Histone H2B OS=Hevea brasiliensis GN=H2B1 PE=2 SV=1	[more]
A0A0A0LV55_CUCSA	1.1e-60	96.48	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	1.8e-60	94.33	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	1.8e-60	94.33	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]

BLAST of CmoCh12G008230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	1.8e-59	91.72	Histone superfamily protein	[more]
AT5G59910.1	5.2e-59	88.67	Histone superfamily protein	[more]
AT3G45980.1	2.6e-58	88.00	Histone superfamily protein	[more]
AT2G28720.1	2.2e-57	86.09	Histone superfamily protein	[more]
AT1G07790.1	3.7e-57	87.16	Histone superfamily protein	[more]

BLAST of CmoCh12G008230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823172029\|ref\|XP_012484994.1\|	1.2e-60	95.04	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|312985271\|gb\|ADR30786.1\|	1.2e-60	95.83	histone H2B1 [Hevea brasiliensis]	[more]
gi\|778659255\|ref\|XP_011654070.1\|	1.5e-60	96.48	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	2.6e-60	94.33	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	2.6e-60	94.33	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008230.1	CmoCh12G008230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 73..93 score: 5.2E-49coord: 112..125 score: 5.2E-49coord: 54..72 score: 5.2E-49coord: 125..138 score: 5.2E-49coord: 95..112 score: 5.2
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..141 score: 1.1E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 44..140 score: 8.0
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 109..131 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..117 score: 1.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 21..141 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 26..141 score: 1.61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008230	CmaCh13G002590	Cucurbita maxima (Rimu)	cmacmoB217
CmoCh12G008230	ClCG01G013820	Watermelon (Charleston Gray)	cmowcgB142

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008230	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008230	Cucumber (Chinese Long) v2	cmocuB148
CmoCh12G008230	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008230	Watermelon (97103) v1	cmowmB151
CmoCh12G008230	Cucurbita pepo (Zucchini)	cmocpeB165
CmoCh12G008230	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008230	Cucurbita pepo (Zucchini)	cmocpeB179
CmoCh12G008230	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008230	Cucumber (Gy14) v2	cgybcmoB054
CmoCh12G008230	Silver-seed gourd	carcmoB0233
CmoCh12G008230	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008230	Watermelon (97103) v2	cmowmbB149
CmoCh12G008230	Wax gourd	cmowgoB0214
CmoCh12G008230	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh12G008230	Cucumber (Gy14) v1	cgycmoB0593
CmoCh12G008230	Cucurbita maxima (Rimu)	cmacmoB177