CmoCh12G008000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr12 : 6911154 .. 6912506 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGCTGCTTGCTTCTTTAGATTCATCTTCTTGTTTTGATGTTACTTTTTTTTTTTTCCTCTTAATTTCATTCTGATGCGATTTTTTAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC

mRNA sequence

AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC

Coding sequence (CDS)

ATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAG

Homology

[Close]

BLAST of CmoCh12G008000 vs. TrEMBL
Match: A0A0B0NAQ9_GOSAR (Alpha-1B-glycoprotein OS=Gossypium arboreum GN=F383_36259 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-09
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGS--AARNVSVSSVLPSVRSSFVSRRISISPHSL-RLLRR 60
          MAA++A RSS LR I R +T S  A   +S S    S+RS+F   +  ISP SL R +RR
Sbjct: 1  MAATIASRSSFLRPILRTATTSTIARTKISFSGPSSSLRSNFSLHQTRISPPSLSRFVRR 60

Query: 61 ELSSLRPIHSAIASACLVSELPAEASASVQG 89
          ELS+L+P+HSA+ASACLVS+LP++A++  +G
Sbjct: 61 ELSTLQPLHSAVASACLVSKLPSDANSCAEG 91

[Close]

BLAST of CmoCh12G008000 vs. TrEMBL
Match: A0A0D2UIL1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G088100 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-08
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPS--VRSSFVSRRISISPHSL-RLLRR 60
          MAA++A RSS LR I R +T S      +   +PS  +RS+F   +  ISP SL R +RR
Sbjct: 1  MAATIASRSSFLRPILRTATTSTKARTKIPFSVPSSSLRSNFSLHQTRISPPSLSRFVRR 60

Query: 61 ELSSLRPIHSAIASACLVSELPAEASASVQG 89
          ELS+L+P+HSA+ASACLVS+LP++A++  +G
Sbjct: 61 ELSTLQPLHSAVASACLVSKLPSDANSCAEG 91

[Close]

BLAST of CmoCh12G008000 vs. TrEMBL
Match: M5W0K9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012639mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 1   MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
           M+AS+A RS+ LRA  R +T   AR +S +   PS++S+F+ RR   SP S RLLRRELS
Sbjct: 71  MSASIAGRSTILRAFCRATTTRRAR-ISATPC-PSIQSNFMPRR---SPSS-RLLRRELS 130

Query: 61  SLRPIHSAIASACLVSELPAEASAS 86
           SL+P+HSAIASACL+S+LPA A++S
Sbjct: 131 SLQPLHSAIASACLISKLPALATSS 149

[Close]

BLAST of CmoCh12G008000 vs. TrEMBL
Match: F6GW47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01350 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-06
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 1  MAASVAL-RSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP----HSLRLL 60
          MAAS+   RS+ LR+I RIS  S A +       PS+  +F+ R   +S      S R L
Sbjct: 1  MAASIGGGRSTFLRSIRRISRNSTASS-------PSISPNFMLRHTPVSSPRPSSSSRWL 60

Query: 61 RRELSSLRPIHSAIASACLVSELPAEASASVQG 89
           R+LSSL P+HSAIASACLVS LPAE + S+QG
Sbjct: 61 PRQLSSLLPVHSAIASACLVSNLPAEPTTSIQG 86

[Close]

BLAST of CmoCh12G008000 vs. NCBI nr
Match: gi|728829466|gb|KHG08909.1| (Alpha-1B-glycoprotein [Gossypium arboreum])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGS--AARNVSVSSVLPSVRSSFVSRRISISPHSL-RLLRR 60
          MAA++A RSS LR I R +T S  A   +S S    S+RS+F   +  ISP SL R +RR
Sbjct: 1  MAATIASRSSFLRPILRTATTSTIARTKISFSGPSSSLRSNFSLHQTRISPPSLSRFVRR 60

Query: 61 ELSSLRPIHSAIASACLVSELPAEASASVQG 89
          ELS+L+P+HSA+ASACLVS+LP++A++  +G
Sbjct: 61 ELSTLQPLHSAVASACLVSKLPSDANSCAEG 91

[Close]

BLAST of CmoCh12G008000 vs. NCBI nr
Match: gi|657986600|ref|XP_008385434.1| (PREDICTED: uncharacterized protein LOC103447983 isoform X2 [Malus domestica])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
          M+AS+A RS+ LRA  R +T +A   +S +   PS+ S+F++RR   SP S RLLRRELS
Sbjct: 1  MSASIAGRSTILRAFFRAATSTARTRISAAPC-PSIPSNFMARR---SPSS-RLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASAS 86
          SL+P+H+AIASACL+S+LPA A++S
Sbjct: 61 SLQPLHTAIASACLISKLPALATSS 80

[Close]

BLAST of CmoCh12G008000 vs. NCBI nr
Match: gi|657986598|ref|XP_008385433.1| (PREDICTED: uncharacterized protein LOC103447983 isoform X1 [Malus domestica])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
          M+AS+A RS+ LRA  R +T +A   +S +   PS+ S+F++RR   SP S RLLRRELS
Sbjct: 1  MSASIAGRSTILRAFFRAATSTARTRISAAPC-PSIPSNFMARR---SPSS-RLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASAS 86
          SL+P+H+AIASACL+S+LPA A++S
Sbjct: 61 SLQPLHTAIASACLISKLPALATSS 80

[Close]

BLAST of CmoCh12G008000 vs. NCBI nr
Match: gi|823230128|ref|XP_012447800.1| (PREDICTED: uncharacterized protein LOC105770964 [Gossypium raimondii])

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPS--VRSSFVSRRISISPHSL-RLLRR 60
          MAA++A RSS LR I R +T S      +   +PS  +RS+F   +  ISP SL R +RR
Sbjct: 1  MAATIASRSSFLRPILRTATTSTKARTKIPFSVPSSSLRSNFSLHQTRISPPSLSRFVRR 60

Query: 61 ELSSLRPIHSAIASACLVSELPAEASASVQG 89
          ELS+L+P+HSA+ASACLVS+LP++A++  +G
Sbjct: 61 ELSTLQPLHSAVASACLVSKLPSDANSCAEG 91

[Close]

BLAST of CmoCh12G008000 vs. NCBI nr
Match: gi|595830371|ref|XP_007206055.1| (hypothetical protein PRUPE_ppa012639mg [Prunus persica])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 1   MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
           M+AS+A RS+ LRA  R +T   AR +S +   PS++S+F+ RR   SP S RLLRRELS
Sbjct: 71  MSASIAGRSTILRAFCRATTTRRAR-ISATPC-PSIQSNFMPRR---SPSS-RLLRRELS 130

Query: 61  SLRPIHSAIASACLVSELPAEASAS 86
           SL+P+HSAIASACL+S+LPA A++S
Sbjct: 131 SLQPLHSAIASACLISKLPALATSS 149

The following BLAST results are available for this feature:

BLAST of CmoCh12G008000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G008000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NAQ9_GOSAR	9.9e-09	51.65	Alpha-1B-glycoprotein OS=Gossypium arboreum GN=F383_36259 PE=4 SV=1	[more]
A0A0D2UIL1_GOSRA	2.2e-08	49.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G088100 PE=4 SV=1	[more]
M5W0K9_PRUPE	3.8e-08	57.65	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012639mg PE=4 SV=1	[more]
F6GW47_VITVI	7.9e-06	49.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01350 PE=4 SV=...	[more]

BLAST of CmoCh12G008000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G008000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728829466\|gb\|KHG08909.1\|	1.4e-08	51.65	Alpha-1B-glycoprotein [Gossypium arboreum]	[more]
gi\|657986600\|ref\|XP_008385434.1\|	1.4e-08	55.29	PREDICTED: uncharacterized protein LOC103447983 isoform X2 [Malus domestica]	[more]
gi\|657986598\|ref\|XP_008385433.1\|	1.4e-08	55.29	PREDICTED: uncharacterized protein LOC103447983 isoform X1 [Malus domestica]	[more]
gi\|823230128\|ref\|XP_012447800.1\|	3.2e-08	49.45	PREDICTED: uncharacterized protein LOC105770964 [Gossypium raimondii]	[more]
gi\|595830371\|ref\|XP_007206055.1\|	5.4e-08	57.65	hypothetical protein PRUPE_ppa012639mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008000.1	CmoCh12G008000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008000	Cp4.1LG07g06610	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008000	Carg26935	Silver-seed gourd	carcmoB0951

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008000	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh12G008000	Cucumber (Gy14) v1	cgycmoB0593
CmoCh12G008000	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008000	Cucurbita maxima (Rimu)	cmacmoB217
CmoCh12G008000	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008000	Cucumber (Chinese Long) v2	cmocuB148
CmoCh12G008000	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008000	Watermelon (Charleston Gray)	cmowcgB138
CmoCh12G008000	Watermelon (97103) v1	cmowmB154
CmoCh12G008000	Cucurbita pepo (Zucchini)	cmocpeB165
CmoCh12G008000	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008000	Cucumber (Gy14) v2	cgybcmoB054
CmoCh12G008000	Melon (DHL92) v3.6.1	cmomedB151
CmoCh12G008000	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008000	Watermelon (97103) v2	cmowmbB145
CmoCh12G008000	Wax gourd	cmowgoB0214