CmoCh12G007950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionOrf101b
LocationCmo_Chr12 : 6647566 .. 6647894 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCTTATTCGGGGACAAGGGGTAGAAGGACCTCTCGATCTACTTACAGCTGCCCAGGAAGAAAAACGTCGTCTAGGCATTCCCTCTCCCATCTACCCTACGCCTAGGACGTTGTCTGGGCCAAGAGCCATAGTTAGCTGTTTCCATTTGCTTGTTTTCTTGTTGTTGATACCGGCCAAGACCCAGCCAGATGATGTCCGCTGGTTGGTAGTGAGAGGACTCTTAGTACCTGCATACCCAAAAGAAAGGGGGCACTGATTACATTCTTCTTCCTGATTTTCTTACTCTCCCTTAGCAGCGTGGAAGGAGTCCATCTATCTGCCTAG

mRNA sequence

ATGACCCTTATTCGGGGACAAGGGGTAGAAGGACCTCTCGATCTACTTACAGCTGCCCAGGAAGAAAAACGTCGTCTAGGCATTCCCTCTCCCATCTACCCTACGCCTAGGACGTTGTCTGGGCCAAGAGCCATAGTTAGCTGTTTCCATTTGCTTGTTTTCTTGTTGTTGATACCGGCCAAGACCCAGCCAGATGATGTCCGCTGCGTGGAAGGAGTCCATCTATCTGCCTAG

Coding sequence (CDS)

ATGACCCTTATTCGGGGACAAGGGGTAGAAGGACCTCTCGATCTACTTACAGCTGCCCAGGAAGAAAAACGTCGTCTAGGCATTCCCTCTCCCATCTACCCTACGCCTAGGACGTTGTCTGGGCCAAGAGCCATAGTTAGCTGTTTCCATTTGCTTGTTTTCTTGTTGTTGATACCGGCCAAGACCCAGCCAGATGATGTCCGCTGCGTGGAAGGAGTCCATCTATCTGCCTAG
Homology
[Close]
BLAST of CmoCh12G007950 vs. TrEMBL
Match: B9T926_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2025420 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-07
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 

Query: 21 EEKRRLGIP-SPIYPTPRTLSGPRAIVS-CFHLLVFLLLI-PAKTQPDDV--RCVEGVHL 78
          E+KR    P +PI P PRTLSGPRAIVS CFHL+VF L++   KTQPDDV    V G+ +
Sbjct: 30 EKKRTKAFPLAPIPPMPRTLSGPRAIVSCCFHLVVFFLVVDTGKTQPDDVYWLVVRGLLV 89

[Close]
BLAST of CmoCh12G007950 vs. NCBI nr
Match: gi|223524642|gb|EEF27636.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 

Query: 21 EEKRRLGIP-SPIYPTPRTLSGPRAIVS-CFHLLVFLLLI-PAKTQPDDV--RCVEGVHL 78
          E+KR    P +PI P PRTLSGPRAIVS CFHL+VF L++   KTQPDDV    V G+ +
Sbjct: 30 EKKRTKAFPLAPIPPMPRTLSGPRAIVSCCFHLVVFFLVVDTGKTQPDDVYWLVVRGLLV 89

The following BLAST results are available for this feature:
BLAST of CmoCh12G007950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007950 vs. TrEMBL
Match NameE-valueIdentityDescription
B9T926_RICCO8.1e-0759.68Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2025420 PE=4 SV=1[more]
BLAST of CmoCh12G007950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223524642|gb|EEF27636.1|1.2e-0659.68conserved hypothetical protein [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007950.1CmoCh12G007950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007950Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007950Cucumber (Gy14) v1cgycmoB0593
CmoCh12G007950Cucurbita maxima (Rimu)cmacmoB177
CmoCh12G007950Wild cucumber (PI 183967)cmocpiB148
CmoCh12G007950Cucumber (Chinese Long) v2cmocuB148
CmoCh12G007950Watermelon (Charleston Gray)cmowcgB138
CmoCh12G007950Watermelon (97103) v1cmowmB154
CmoCh12G007950Bottle gourd (USVL1VR-Ls)cmolsiB158
CmoCh12G007950Cucumber (Gy14) v2cgybcmoB054
CmoCh12G007950Melon (DHL92) v3.6.1cmomedB151
CmoCh12G007950Cucumber (Chinese Long) v3cmocucB0172
CmoCh12G007950Watermelon (97103) v2cmowmbB145
CmoCh12G007950Wax gourdcmowgoB0214