CmoCh12G007940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNADH-quinone oxidoreductase subunit H
LocationCmo_Chr12 : 6645804 .. 6646545 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAGAGAAGAGAAAAGATTCCCGACCCAGAGCATCTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCTTGCTTACTCTCAGCCACTAGTTAAGTTAGAAGGAAATCCGTTGACTTCGTTTATGCTCTTATGCAGTAAAGAAAGCAAGTGAGGCGGGCTTCCATTCGAAGTAAGATAAGAGGATTCGATCTTGCACCATCTTCAACTCTTCTCGAGATCTGGTGTTTTTCGAGAAAAGGTCCGATCCATTAATATCATGATTGGGTCGCCCAGGCCAGATCGTCAGTGAAATATCATGATCGGGTCGACTAGGCCAGATCGTCAGTGAATAGAAGATCGAAAACGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACAACTTCTACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCAAAAGGGTCCTGATGTAGTGGGATCATTCGGATTGTTTCAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACTTCTTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCAGGCTGTTGTACCTTTTGATTATGGGATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTAG

mRNA sequence

ATGCAAAAGAGAAGAGAAAAGATTCCCGACCCAGAGCATCTTATTGACTCAACCACAAATCTGTTGAATGAAGTAAAGAAAGCAAGTGAGGCGGGCTTCCATTCGAAATCGTCAGTGAATAGAAGATCGAAAACGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACAACTTCTACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCAAAAGGGTCCTGATGTAGTGGGATCATTCGGATTGTTTCAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACTTCTTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCAGGCTGTTGTACCTTTTGATTATGGGATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTAG

Coding sequence (CDS)

ATGCAAAAGAGAAGAGAAAAGATTCCCGACCCAGAGCATCTTATTGACTCAACCACAAATCTGTTGAATGAAGTAAAGAAAGCAAGTGAGGCGGGCTTCCATTCGAAATCGTCAGTGAATAGAAGATCGAAAACGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACAACTTCTACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCAAAAGGGTCCTGATGTAGTGGGATCATTCGGATTGTTTCAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACTTCTTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCAGGCTGTTGTACCTTTTGATTATGGGATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTAG
Homology
[Close]
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.2e-60
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SK YIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKMYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

[Close]
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-58
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 1 

Query: 46  YIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIK 105
           YIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKL++K
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILK 61

Query: 106 ELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 165
           E +SPSSANFSLFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI
Sbjct: 62  EPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 121

Query: 166 IIAGWSSN 174
           IIAGWSSN
Sbjct: 122 IIAGWSSN 129

[Close]
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 46  YIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIK 105
           YIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKL++K
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILK 61

Query: 106 ELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 165
           E +SPSSANF LFRMAPVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAISSLGVYGI
Sbjct: 62  EPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGI 121

Query: 166 IIAGWSSN 174
           IIAGWSSN
Sbjct: 122 IIAGWSSN 129

[Close]
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-55
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 46  YIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIK 105
           YIAVPAEIL +IL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKL++K
Sbjct: 2   YIAVPAEILCLILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILK 61

Query: 106 ELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 165
           E +SPSSANF LFRMAPVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAISSLGVYGI
Sbjct: 62  EPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGI 121

Query: 166 IIAGWSSN 174
           IIAGWSSN
Sbjct: 122 IIAGWSSN 129

[Close]
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match: NU1M_MARPO (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1 

Query: 47  IAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIKE 106
           I + A+ILGII+ LLLGVAFLVLAERKVMA +QR+KGP+VVG  GL QPLADGLKLMIKE
Sbjct: 6   IGLVAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKLMIKE 65

Query: 107 LLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGII 166
            + PSSAN  +F MAPV TF L+L A AV+PFDYGMV SD NIG+LYLFAISSLGVYGII
Sbjct: 66  PILPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYGII 125

Query: 167 IAGWSSN 174
            AGW+SN
Sbjct: 126 TAGWASN 132

[Close]
BLAST of CmoCh12G007940 vs. TrEMBL
Match: A0A0D2PSE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G164200 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 136/173 (78.61%), Postives = 141/173 (81.50%), Query Frame = 1 

Query: 1   MQKRREKIPDPEHLIDSTTNLLNEVKKASEAGFHSKSSVNRRSKTYIAVPAEILGIILQL 60
           MQKRR KIPDPEH+IDSTT LLNE                       AVPAEILGIIL L
Sbjct: 1   MQKRRAKIPDPEHVIDSTTKLLNE-----------------------AVPAEILGIILPL 60

Query: 61  LLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIKELLSPSSANFSLFRM 120
           LLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKL++KE +SPSSANFSLFRM
Sbjct: 61  LLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRM 120

Query: 121 APVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSN 174
           APVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAISSLGVYGII AG SSN
Sbjct: 121 APVATFMLSLVAWAVVPFDYGMVLSDSNIGLLYLFAISSLGVYGIITAGRSSN 150

[Close]
BLAST of CmoCh12G007940 vs. TrEMBL
Match: A0A0U2PH88_9ROSA (NADH-ubiquinone oxidoreductase chain 1 OS=Malus hupehensis var. mengshanensis GN=nad1 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-58
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPV TFMLSLVA+AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVTTFMLSLVARAVVPFDYGMVLSDSNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

[Close]
BLAST of CmoCh12G007940 vs. TrEMBL
Match: J9JER7_MALDO (NADH-ubiquinone oxidoreductase chain 1 OS=Malus domestica GN=nad1 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-58
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPV TFMLSLVA+AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVTTFMLSLVARAVVPFDYGMVLSDSNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

[Close]
BLAST of CmoCh12G007940 vs. TrEMBL
Match: Q37565_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=nad1 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-57
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGII AG SSN
Sbjct: 121 SLGVYGIITAGRSSN 135

[Close]
BLAST of CmoCh12G007940 vs. TrEMBL
Match: G3EIX4_CUCSA (NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis sativus GN=nad1 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-57
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 1 

Query: 46  YIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIK 105
           YIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKLMIK
Sbjct: 2   YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLMIK 61

Query: 106 ELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 165
           E LSPSSANFSLFRMAPVATFMLSLVA+AVVPFDYG+VLSDPNIGLLYLFAISSLGVYGI
Sbjct: 62  EPLSPSSANFSLFRMAPVATFMLSLVARAVVPFDYGIVLSDPNIGLLYLFAISSLGVYGI 121

Query: 166 IIAGWSSN 174
           IIAGWSSN
Sbjct: 122 IIAGWSSN 129

[Close]
BLAST of CmoCh12G007940 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-57
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 45  TYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMI 104
           TYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADG KL++
Sbjct: 1   TYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLIL 60

Query: 105 KELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 164
           KE +SPSSANF LFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAISSLGVYG
Sbjct: 61  KEPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 120

Query: 165 IIIAGWSSN 174
           IIIAG SSN
Sbjct: 121 IIIAGRSSN 129

[Close]
BLAST of CmoCh12G007940 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-57
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 45  TYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMI 104
           TYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADG KL++
Sbjct: 1   TYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLIL 60

Query: 105 KELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 164
           KE +SPSSANF LFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAISSLGVYG
Sbjct: 61  KEPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 120

Query: 165 IIIAGWSSN 174
           IIIAG SSN
Sbjct: 121 IIIAGRSSN 129

[Close]
BLAST of CmoCh12G007940 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-57
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 45  TYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMI 104
           TYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADG KL++
Sbjct: 1   TYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLIL 60

Query: 105 KELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 164
           KE +SPSSANF LFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAISSLGVYG
Sbjct: 61  KEPISPSSANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYG 120

Query: 165 IIIAGWSSN 174
           IIIAG SSN
Sbjct: 121 IIIAGRSSN 129

[Close]
BLAST of CmoCh12G007940 vs. TAIR10
Match: AT2G07785.1 (AT2G07785.1 NADH dehydrogenase family protein)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 1 

Query: 75  MAFVQRQKGPDVVGSFGLFQPLADGLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQA 134
           MAFVQR+KGPDVVGSFGL QPLADG KL++KE +SPSSANF LFRMAPVATFMLSLVA+A
Sbjct: 1   MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARA 60

Query: 135 VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSN 174
           VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAG SSN
Sbjct: 61  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSN 99

[Close]
BLAST of CmoCh12G007940 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-19
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 1 

Query: 46  YIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIK 105
           +I VP  I  ++L ++ GV  +V  ER++ A +Q++ GP+  G  G+ Q LADG KL+ K
Sbjct: 28  WIFVP--IFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFK 87

Query: 106 ELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGI 165
           E L PS  N  LF + P    +  L++ +V+PF   +VL+D NIG+    AISS+   G+
Sbjct: 88  ENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGL 147

Query: 166 IIAGWSSN 174
           +++G+ SN
Sbjct: 148 LMSGYGSN 153

[Close]
BLAST of CmoCh12G007940 vs. NCBI nr
Match: gi|763742275|gb|KJB09774.1| (hypothetical protein B456_001G164200 [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 136/173 (78.61%), Postives = 141/173 (81.50%), Query Frame = 1 

Query: 1   MQKRREKIPDPEHLIDSTTNLLNEVKKASEAGFHSKSSVNRRSKTYIAVPAEILGIILQL 60
           MQKRR KIPDPEH+IDSTT LLNE                       AVPAEILGIIL L
Sbjct: 1   MQKRRAKIPDPEHVIDSTTKLLNE-----------------------AVPAEILGIILPL 60

Query: 61  LLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLADGLKLMIKELLSPSSANFSLFRM 120
           LLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLADGLKL++KE +SPSSANFSLFRM
Sbjct: 61  LLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRM 120

Query: 121 APVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSN 174
           APVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAISSLGVYGII AG SSN
Sbjct: 121 APVATFMLSLVAWAVVPFDYGMVLSDSNIGLLYLFAISSLGVYGIITAGRSSN 150

[Close]
BLAST of CmoCh12G007940 vs. NCBI nr
Match: gi|939462371|gb|ALJ78526.1| (NADH dehydrogenase subunit 1 (mitochondrion) [Malus hupehensis var. mengshanensis])

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-58
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPV TFMLSLVA+AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVTTFMLSLVARAVVPFDYGMVLSDSNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

[Close]
BLAST of CmoCh12G007940 vs. NCBI nr
Match: gi|404481677|ref|YP_006666117.1| (NADH dehydrogenase subunit 1 (mitochondrion) [Malus domestica])

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-58
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPV TFMLSLVA+AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVTTFMLSLVARAVVPFDYGMVLSDSNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

[Close]
BLAST of CmoCh12G007940 vs. NCBI nr
Match: gi|903844|gb|AAA70292.1| (NADH dehydrogenase (ubiquinone) (mitochondrion) [Oenothera berteroana])

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SKTYIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKTYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPVATFMLSLVA+AVVPFDYGMVLSDPNIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGII AG SSN
Sbjct: 121 SLGVYGIITAGRSSN 135

[Close]
BLAST of CmoCh12G007940 vs. NCBI nr
Match: gi|400637|sp|P31839.1|NU1M_OENBE (RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName: Full=NADH dehydrogenase subunit 1 (mitochondrion) [Oenothera berteroana])

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1 

Query: 39  VNRRSKTYIAVPAEILGIILQLLLGVAFLVLAERKVMAFVQRQKGPDVVGSFGLFQPLAD 98
           +NR+SK YIAVPAEILGIIL LLLGVAFLVLAERKVMAFVQR+KGPDVVGSFGL QPLAD
Sbjct: 1   MNRKSKMYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLAD 60

Query: 99  GLKLMIKELLSPSSANFSLFRMAPVATFMLSLVAQAVVPFDYGMVLSDPNIGLLYLFAIS 158
           GLKL++KE +SPSSANFSLFRMAPVATFMLSLVA AVVPFDYGMVLSD NIGLLYLFAIS
Sbjct: 61  GLKLILKEPISPSSANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAIS 120

Query: 159 SLGVYGIIIAGWSSN 174
           SLGVYGIIIAGWSSN
Sbjct: 121 SLGVYGIIIAGWSSN 135

The following BLAST results are available for this feature:
BLAST of CmoCh12G007940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU1M_OENBE9.2e-6091.11NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1[more]
NU1M_PETHY1.0e-5893.75NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1[more]
NU1M_ARATH1.6e-5692.19NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4[more]
NU1M_WHEAT3.1e-5590.63NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1[more]
NU1M_MARPO5.4e-4475.59NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2[more]
BLAST of CmoCh12G007940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2PSE9_GOSRA2.2e-6078.61Uncharacterized protein OS=Gossypium raimondii GN=B456_001G164200 PE=3 SV=1[more]
A0A0U2PH88_9ROSA1.6e-5891.11NADH-ubiquinone oxidoreductase chain 1 OS=Malus hupehensis var. mengshanensis GN... [more]
J9JER7_MALDO1.6e-5891.11NADH-ubiquinone oxidoreductase chain 1 OS=Malus domestica GN=nad1 PE=3 SV=1[more]
Q37565_OENBE1.0e-5791.11NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=nad1 PE=3 SV=1[more]
G3EIX4_CUCSA3.9e-5795.31NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis sativus GN=nad1 PE=3 SV=1[more]
BLAST of CmoCh12G007940 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG01120.11.6e-5791.47ATMG01120.1 NADH dehydrogenase 1B[more]
ATMG00516.11.6e-5791.47ATMG00516.1 NADH dehydrogenase 1C[more]
ATMG01275.11.6e-5791.47ATMG01275.1 NADH dehydrogenase 1A[more]
AT2G07785.14.9e-4389.90 NADH dehydrogenase family protein[more]
ATCG01100.18.4e-1939.06ATCG01100.1 NADH dehydrogenase family protein[more]
BLAST of CmoCh12G007940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763742275|gb|KJB09774.1|3.2e-6078.61hypothetical protein B456_001G164200 [Gossypium raimondii][more]
gi|939462371|gb|ALJ78526.1|2.3e-5891.11NADH dehydrogenase subunit 1 (mitochondrion) [Malus hupehensis var. mengshanensi... [more]
gi|404481677|ref|YP_006666117.1|2.3e-5891.11NADH dehydrogenase subunit 1 (mitochondrion) [Malus domestica][more]
gi|903844|gb|AAA70292.1|1.5e-5791.11NADH dehydrogenase (ubiquinone) (mitochondrion) [Oenothera berteroana][more]
gi|400637|sp|P31839.1|NU1M_OENBE1.5e-5791.11RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName: Full=NADH dehydro... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001694NADH_UbQ_OxRdtase_su1/FPO
IPR018086NADH_UbQ_OxRdtase_su1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016020 membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007940.1CmoCh12G007940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 30..173
score: 3.0
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 52..173
score: 1.2
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved sitePROSITEPS00667COMPLEX1_ND1_1coord: 91..106
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G007940CmaCh12G007710Cucurbita maxima (Rimu)cmacmoB177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007940Cucumber (Chinese Long) v3cmocucB0172
CmoCh12G007940Watermelon (97103) v2cmowmbB145
CmoCh12G007940Wax gourdcmowgoB0214
CmoCh12G007940Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007940Cucumber (Gy14) v1cgycmoB0593
CmoCh12G007940Wild cucumber (PI 183967)cmocpiB148
CmoCh12G007940Cucumber (Chinese Long) v2cmocuB148
CmoCh12G007940Watermelon (Charleston Gray)cmowcgB138
CmoCh12G007940Watermelon (97103) v1cmowmB154
CmoCh12G007940Bottle gourd (USVL1VR-Ls)cmolsiB158
CmoCh12G007940Cucumber (Gy14) v2cgybcmoB054
CmoCh12G007940Melon (DHL92) v3.6.1cmomedB151