CmoCh12G007860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGag-pol polyprotein
LocationCmo_Chr12 : 6385040 .. 6389350 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTATGTTCACAACTCCTTATTTGGTCTAGTCTCGTGGAAGGCATATTGAATCAACTAAAAGAGTCATTCTCACCCATGTAAATTAAAGGAAAAACCCTCACAGGCTCTTCATAACTCACTCAAGATTAAGATTGAGCCGCGTATGATCATGTAAAATACTAATCTTCTCAATTAACAGATTTATGAAGAGAGATTAAATATTTTTTTGGTCAAGTCTTATACAAACTCATTGTATGGGGTACCCCCACTTACATGTCTCCACATGAACGATTTGGATCAAGTCATTTGTAACTATTAAAAAGTGGGCCTTATCAATAGTGTTACTAGGATAAGGCCCCCAACCTTATTCATATACTATAGATTCCTTACGTTATTACTTGAACACGATTCTCTTATATGTCAACCATATACTGTTCAAAATTACATTAATAACCTTGGATTTTCATGACATGGATAATAATTAAATTATAAATAAAATAATAAAAATTATTGTTAGAAACTAAATAATTAATTAGGAGGCTTATCCCAACATCATCATCTCTTGTAAATAAAAGATTATCAACATAAATGTATTTATGTCATGTGCATCGGGATGCTTATCCATTATGTGATGTTAGTACGGATGCGTACTTTCAATATTAATGTTCGCCATGATATCATGTGAGCCTTTCCTTTTTGGTGGCATCTGATGACGCGTTAGCATATTGTGTCCGACCAAGTTAGACTTAAGAAATAAGTATACGAGCCCGCCTGGTGAGTCAACGTGTGCATACATGGATCGTGTGTGAGGAGTACTATACATCCAACCCTATCTGAAATTGGAAAAAGTTCATGGCCATGTTGTGGTTTTAAAAGATACGTCTCATCATTATATTTATGTGATTACATTATTAACCCAATAGTAGAATGACTTACTGAGTATTCTTTACGAATGATGGTGAATGTTGGAATAACAATATAAGTTAAGATAGGATAGTAGTATGTATTTTTTATTTAATGATACGTGGATCTTTATTTTTGCATGCAACAACTATGCTATTTCTATTTTCTTTGTTTTAAACTTGATGGGGATGTCCATGACTTCCTTTTGAAAATGTTTTATTTTAAATTTTCGCATATGTTAGTTAAGGCAAAATCACGGCTAAAATAAATTATAAGTACCAATAATATCATGTAAATAAGTCATAAAGATAACATGACCAAATGAATTACTTAAATTCTGGAAGTTTATAGTCATATACATTAGGGGCAGTATGGTCATTTTCTACCTAACTTATGGTTTGAGCCCAAACATAATCCAATGGTCACGGAATGCTACCAGTCCCTTAAAAGTCATTAATTTAGGTCATATATAAATTTGTAACATCAGTGTCAAACAATCGATTAAAATTGGTTAATAATATTTGTTTATAGAATGAAACTAAATACAGAATAGGAGGGAAGATTGAGGAAAGATTTGGTGAACATAATTTAAAAATAAAATCGAAAATATCTGAGGCAAGAAACTCCATTAAATTTTGTCTAGTAACAATATATTCCCTACTACGCTTATAATAGAAAATAAGATATTTAGTGAAAATAGCATATTATATATATATATATATATATATATATATATATATATATATATATATATATAACATTTGAAGACTTTTAACAATAGACCAATGTAGATTAGAGAAATAATTTTATAAGTAAAAACTTGAAACTGAGGTCATGGGCTCACATAGGTTGACTTGGATTTCAAAAGACAAAATTGAACTTTCATTAAGGATATATTCGTGATAACAACGAACCAAGTAAGTAGCCTTATTATCGGCATGATTATATTTGATGTTGACATGTGCCATATGTTGGCTTTTTGGCCTTGATCTCACTTTAATTAATTTCAATCAATTAATTGATGTTTTGATGATAACAAACCTACTTTTTAATTATTAATTATTTTCAGTATTTTGAACTGTCCAACAGTATAAGGTCGGGAATAACAATTTCAACGACTTTTCAATTACTCAAATCAGAGCTAAAACGAAGAAATTACAGTCGAGACAACATACCCGACGTGATGATGTGGCAGCAAAATCAAAATGATGGATAAATCAAAATATATCAAAGTATGACATTTATGATTTTGGGAGAGTAACAAATGGTGGAGTTTTTCTTATTACTATATTTTTAAATAAAGTTATTTTTACAAAATATAAATTTGAATCTAACCGTTACTCACATCGATTTTTATTATTACTATATTATATTATTATATTATTATATTTTAAAATTTTGGTGGTTACTCACATCGTTTTTATTATTATTATATTATTATATTTATAATAAATTTTGAATTTCATTTGACCGTTACTCACATAACTTTTTATTATTATTATATTATATTACTATTATATTAAAATTTTGAAATAAATGAATTTAGAAAATTTTCTTATTTATTTACTTTTAATCTCCACCTTCCATTATTCCTAACACAATCCAATGGTCAATATTCAATCCTACATTTTGCCACTTTTCTCCTCTATATAAACTCATCTTCCCCACATTTTAAAACACACAACTTACATACATTCTCCAATCCTCATTTGTTCAAAGTCTCCATTGTTTGTTGCTCTCTCCAAGCTTACAAGTTTATTTCTTTTCATCTTATTCTTGAGAGGGATTATTTTTGTATTGTGAGGAAATAGTTGTGAGTATCCCAAATTGTAAATCTACTCTTTGAGAGAGTTGTGGTGTGCTATTATCAAACTCAAATACTTGTATCGGTTTGATCCTGCGCCGTGGAAAGGATTGAGTTTGCTCTTGAACTCGTAAAAAGAGCGGTGTAGCGGTTTGGCTCAGATCCGTGGAAAGAGTCGAGAAAGTTCTTTATTCAAATTCCCAAGAGGCGCTTGGGGAGTGGAGTAGGTCGAGTTTGACCGAACCACTATAAAACTACGGTGTCATTTTCTCTAACTCTTTTCTACTTAATTTCAAAATTATTATTGTGATTTATTGCATGTTCTACTTGATTATTGTTTTGACTTGAATTACTTTGTTATAGTAATTATCATCTTCTACTTATTTGCAAAAAGTTTCATCATTAGAAAAATTAATCACGTTTAAACACTTTTATCGTTAAAACCCTATTCACCCCCCCTCTAGGGTTGCCATACCGATCCAACAATTGGTATCAGAGCAGGTTGCTCCCATAGATTTTTTATCTAAACTTTATTGTTCGAGCTTATGGCAAACCTACGTGTTAAAAATGGTTTTAGTGAAGGGCAATCAACTTCTAGGCCACCTTATTTTGATGGAACAAATTATACATGTTGGAAAGCTAGAATGAAAATTTATTTGCAATCCGTTGATTATCAATTGTGGTTAAATGTTAGTAATGGTCCTTACATTCCAATAAAAATTGTTAATAATATTGAGGTGCCTAAATTAGAAAATGAATTTGATGAGCATGATATGAAAAAATGTTCTTTAAATGCTAGTGCTATCAATTGTCTGTATTGTGCCTTAAGTAATGACGAATTTAATAGAGTATGTATGTGTTCTTCGGCATATGAAATTTGGAAAACTCTTGAAGTAACTCATGAGGGAACCAATCAAGTTAAAGAAACAAAAATTAGCATGTTAGTTCATAATTATGAACTATTTAAAATGGAGGAAAATGAACCTATTGGTGATATGTTTACTAGATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACTTCCGAAAATGTAAGAAAAATTCTTAGGTCTTTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCGTTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAG

mRNA sequence

ATGAAATTATGTTCACAACTCCTTATTTGGTCTAGTCTCGTGGAAGGCATATTGAATCAACTAAAAGAGTCATTCTCACCCATATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACTTCCGAAAATGTAAGAAAAATTCTTAGGTCTTTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCGTTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAG

Coding sequence (CDS)

ATGAAATTATGTTCACAACTCCTTATTTGGTCTAGTCTCGTGGAAGGCATATTGAATCAACTAAAAGAGTCATTCTCACCCATATTTACTAATATTTTAAATGCTTTGAAAAATCTTGGAAAAGTATATTCTACTTCCGAAAATGTAAGAAAAATTCTTAGGTCTTTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCACAAAGCTTCCTTTGGATGAACTCGTTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCCATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTTCACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAG
Homology
[Close]
BLAST of CmoCh12G007860 vs. TrEMBL
Match: A5AQM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FT I+N L+ LGKV   SE V KILRSLP  W  KVTAIQEAKDLTKLP++EL+GSLMT+
Sbjct: 154 FTEIVNGLEALGKVIXESEKVIKILRSLPSKWHTKVTAIQEAKDLTKLPMEELLGSLMTY 213

Query: 89  EITMNGHMEE-ESKKKKSIALKSIKVDSEDEDVLDE------DDVAYFTRKYKNFIKRKK 148
           EI++   ++E E KKKKSIALK+     E+EDV +E      DD+A  TRK   +++ ++
Sbjct: 214 EISLTKQLQESEDKKKKSIALKA--TTKEEEDVEEEKPSEEDDDLALITRKLNKYMRGER 273

Query: 149 QFKKHFTNQK-------ESKGEKSK---NDEVICYECKKPGHIRTDCPLLK-SSKKSKKK 208
              K FT+++        S G+K K     ++IC++CKKPGHI+ DCPL K  +K+  KK
Sbjct: 274 FRGKKFTSRRNPSRRESSSHGDKEKWEXKGDLICFKCKKPGHIKYDCPLYKIEAKRRMKK 333

Query: 209 AMKATWDDSDESA-SGSDEEVANFCFMAHSDKEDEQEDEQEDE 233
           AM ATW +S+ES+    ++EVAN CFMA  D ++   +  +++
Sbjct: 334 AMMATWSESEESSXEEKEKEVANMCFMAIDDLDEVNSNSSDED 374

[Close]
BLAST of CmoCh12G007860 vs. TrEMBL
Match: A5BSC1_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_030567 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.8e-37
Identity = 106/221 (47.96%), Postives = 147/221 (66.52%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FT I+N L+ LG+V + SE V KILRSLP  W  KVTAIQEAKDLTKLP++EL+GSLMT+
Sbjct: 717 FTEIVNGLEALGRVINESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELLGSLMTY 776

Query: 89  EITMNGHMEE-ESKKKKSIA-LKSIKVDSEDEDVLDE------DDVAYFTRKYKNFIKRK 148
           EI++   ++E E KKKKSIA +       E+EDV +E      DD+A  TRK   +++ +
Sbjct: 777 EISLTKQLQESEDKKKKSIAGVSRSATTKEEEDVEEEKPSEEDDDLALITRKLNKYMRGE 836

Query: 149 KQFKKHFTNQK-------ESKGEKSKNDE---VICYECKKPGHIRTDCPLLK-SSKKSKK 208
           +   K FT+++        S G+K K +E   +IC++CKKPGHI+ DCPL K  +K+  K
Sbjct: 837 RFRGKKFTSRRNPSRRESSSHGDKXKWEEKGDLICFKCKKPGHIKYDCPLYKIEAKRRMK 896

Query: 209 KAMKATWDDSDESASGSDE-EVANFCFMAHSDKEDEQEDEQ 230
           KAM ATW +S+ES+    E EVAN CFMA  D ++  ++++
Sbjct: 897 KAMMATWSESEESSEEEKEKEVANMCFMAIDDLDEGSKEDK 937

[Close]
BLAST of CmoCh12G007860 vs. TrEMBL
Match: W1NQ11_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 111/244 (45.49%), Postives = 154/244 (63.11%), Query Frame = 1 

Query: 5   SQLLIWSSLVEGILNQLKESFSPI---FTNILNALKNLGKVYSTSENVRKILRSLPKSWE 64
           +++ I+S+  E    +  E+ + +   FT I N L +LGKV +  + V KILRSL K+++
Sbjct: 129 TKIQIYSTQYENFKMKSDETIANMYTRFTTITNGLNSLGKVLTQKDMVTKILRSLTKAYQ 188

Query: 65  AKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEE-SKKKKSIALKSIK---VDSED 124
            KV AIQEAKDL+ LPL+EL+GSLM HEI M+   EEE  KKKK+IA KS     +  ED
Sbjct: 189 GKVVAIQEAKDLSTLPLEELIGSLMNHEIFMSAQEEEEVEKKKKTIAFKSSSSHAISEED 248

Query: 125 EDVL--DEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIR 184
           E+ L  D +D+A F++KYK F+K KK F K      +SK  KSK+D  IC+ECKKPGH++
Sbjct: 249 EESLCSDMEDLALFSKKYKKFMKFKKNFGKKPQRGSDSKERKSKDDPPICFECKKPGHMK 308

Query: 185 TDCPLLKSSKKSKKKAMKATWDDSDESASGSD--EEVANFCFMAHSD-----KEDEQEDE 233
            DCP+ K + K K +AM A W +SDE  S  +   EVAN C MA  D      +++ + E
Sbjct: 309 MDCPMRKKN-KYKGRAMLADWLNSDEEDSEEEGKNEVANMCMMALDDGVSISNQNDCDSE 368

[Close]
BLAST of CmoCh12G007860 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 106/223 (47.53%), Postives = 146/223 (65.47%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FT I+N L+ LG+V + SE V KILRSLP  W  KVTAIQEAKDLTKLP++EL+GSLMT+
Sbjct: 154 FTEIVNGLEALGRVINESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELLGSLMTY 213

Query: 89  EITMNGH-MEEESKKKKSIALKSIKVDSEDEDVLDE------DDVAYFTRKYKNFIKRKK 148
           EI++     E E KKKK+IALK+     E+EDV +E      DD+A  TRK   +++ ++
Sbjct: 214 EISLTKQPQESEDKKKKNIALKA--TTKEEEDVEEEKPSEEDDDLALITRKLNKYMRGER 273

Query: 149 QFKKHFTNQK-------ESKGEKSKNDE---VICYECKKPGHIRTDCPLLK-SSKKSKKK 208
              K FT+++        S G+K K +E   +IC++CK PGHI+ DCPL K  +K+  KK
Sbjct: 274 FRGKKFTSRRNPSRRESSSHGDKEKWEEKSDLICFKCKNPGHIKYDCPLYKIEAKRRMKK 333

Query: 209 AMKATWDDSDESASGSDE-EVANFCFMAHSDKEDEQEDEQEDE 233
           AM ATW +S+ES+    E EVAN CFMA  D ++   +  +++
Sbjct: 334 AMMATWSESEESSEEEKEKEVANMCFMAIDDLDEVNSNSSDED 374

[Close]
BLAST of CmoCh12G007860 vs. TrEMBL
Match: A5BQD7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033760 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 105/214 (49.07%), Postives = 140/214 (65.42%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FT+I+N L+ LGK Y  SE V KILRSLP  W  KVTAIQEAKDLTKLP++EL+GSLMT+
Sbjct: 62  FTDIVNGLEALGKTYKESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELIGSLMTY 121

Query: 89  EITMNGHMEE-ESKKKKSIALKSIKVDSEDEDVLDE------DDVAYFTRKYKNFIK--- 148
           EI +   +++ E K KK I LK+     E+EDV +E      DD+   TRK   +++   
Sbjct: 122 EINLAKKLQDGEDKXKKXIXLKA--TTKEEEDVEEEKPSDEDDDLXLITRKLNKYMRGER 181

Query: 149 -RKKQFKKHFTNQKE---SKGEKSKNDE---VICYECKKPGHIRTDCPLLKS-SKKSKKK 208
            R ++F     + K+   S G+K K +E   +IC++CKKPGHI+ DCPL KS +K+  KK
Sbjct: 182 FRGRKFPSRXDSSKKESSSHGDKKKWEEKRNLICFKCKKPGHIKYDCPLYKSEAKRRMKK 241

Query: 209 AMKATWDDSDESASGSDE-EVANFCFMAHSDKED 224
           AM ATW +S+ES+    E EVAN CFMA  D ++
Sbjct: 242 AMMATWSESEESSEEEKEKEVANMCFMAIDDLDE 273

[Close]
BLAST of CmoCh12G007860 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 163/202 (80.69%), Postives = 180/202 (89.11%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FTNI+NALK LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTH
Sbjct: 154 FTNIINALKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTH 213

Query: 89  EITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKH 148
           EI M  H+E+ESKKKKSIALK  S++VD EDED LDEDD+AYF+RKYKNFIKRKK FKKH
Sbjct: 214 EIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKH 273

Query: 149 FTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGS 208
            + QKESKGEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S  
Sbjct: 274 LSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESES-E 333

Query: 209 DEEVANFCFMAHSDKEDEQEDE 229
            EE+AN   MAHSDK+DE +D+
Sbjct: 334 VEEMANLGLMAHSDKDDEHDDK 354

[Close]
BLAST of CmoCh12G007860 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 163/202 (80.69%), Postives = 180/202 (89.11%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FTNI+NALK LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTH
Sbjct: 124 FTNIINALKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTH 183

Query: 89  EITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKH 148
           EI M  H+E+ESKKKKSIALK  S++VD EDED LDEDD+AYF+RKYKNFIKRKK FKKH
Sbjct: 184 EIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKH 243

Query: 149 FTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGS 208
            + QKESKGEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S  
Sbjct: 244 LSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESES-E 303

Query: 209 DEEVANFCFMAHSDKEDEQEDE 229
            EE+AN   MAHSDK+DE +D+
Sbjct: 304 VEEMANLGLMAHSDKDDEHDDK 324

[Close]
BLAST of CmoCh12G007860 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 5.3e-79
Identity = 163/202 (80.69%), Postives = 180/202 (89.11%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FTNI+NALK LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTH
Sbjct: 154 FTNIINALKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTH 213

Query: 89  EITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKH 148
           EI M  H+E+ESKKKKSIALK  S++VD EDED LDEDD+AYF+RKYKNFIKRKK FKKH
Sbjct: 214 EIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKH 273

Query: 149 FTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGS 208
            + QKESKGEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S  
Sbjct: 274 LSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESES-E 333

Query: 209 DEEVANFCFMAHSDKEDEQEDE 229
            EE+AN   MAHSDK+DE +D+
Sbjct: 334 VEEMANLGLMAHSDKDDEHDDK 354

[Close]
BLAST of CmoCh12G007860 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 2.6e-78
Identity = 162/202 (80.20%), Postives = 179/202 (88.61%), Query Frame = 1 

Query: 29  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTH 88
           FTNI+N LK LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTH
Sbjct: 154 FTNIINDLKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTH 213

Query: 89  EITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKH 148
           EI M  H+E+ESKKKKSIALK  S++VD EDED LDEDD+AYF+RKYKNFIKRKK FKKH
Sbjct: 214 EIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKH 273

Query: 149 FTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGS 208
            + QKESKGEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S  
Sbjct: 274 LSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESES-E 333

Query: 209 DEEVANFCFMAHSDKEDEQEDE 229
            EE+AN   MAHSDK+DE +D+
Sbjct: 334 VEEMANLGLMAHSDKDDEHDDK 354

[Close]
BLAST of CmoCh12G007860 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.3e-74
Identity = 155/194 (79.90%), Postives = 172/194 (88.66%), Query Frame = 1 

Query: 37  KNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHM 96
           + LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTHEI M  H+
Sbjct: 95  QGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHL 154

Query: 97  EEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESK 156
           E+ESKKKKSIALK  S++VD EDED LDEDD+AYF+RKYKNFIKRKK FKKH + QKESK
Sbjct: 155 EDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESK 214

Query: 157 GEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFC 216
           GEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN  
Sbjct: 215 GEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESES-EVEEMANLG 274

Query: 217 FMAHSDKEDEQEDE 229
            MAHSDK+DE +D+
Sbjct: 275 LMAHSDKDDEHDDK 287

The following BLAST results are available for this feature:
BLAST of CmoCh12G007860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007860 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AQM5_VITVI2.1e-3747.98Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1[more]
A5BSC1_VITVI7.8e-3747.96Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_030567 P... [more]
W1NQ11_AMBTC1.7e-3645.49Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=... [more]
A5C8K0_VITVI1.7e-3647.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BQD7_VITVI1.7e-3649.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033760 PE=4 SV=1[more]
BLAST of CmoCh12G007860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730802|ref|XP_011659859.1|5.3e-7980.69PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|5.3e-7980.69PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
gi|778665012|ref|XP_011648465.1|5.3e-7980.69PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778688574|ref|XP_011652782.1|2.6e-7880.20PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778708527|ref|XP_011656224.1|2.3e-7479.90PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007860.1CmoCh12G007860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 155..180
score: 5.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 164..179
score: 2.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 164..180
score: 0
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 165..179
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 149..186
score: 2.0
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 29..209
score: 3.1
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 29..209
score: 3.1
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 28..93
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007860Cucumber (Gy14) v2cgybcmoB054
CmoCh12G007860Melon (DHL92) v3.6.1cmomedB151
CmoCh12G007860Cucumber (Chinese Long) v3cmocucB0172
CmoCh12G007860Cucumber (Chinese Long) v3cmocucB0194
CmoCh12G007860Watermelon (97103) v2cmowmbB145
CmoCh12G007860Wax gourdcmowgoB0214
CmoCh12G007860Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007860Cucumber (Gy14) v1cgycmoB0593
CmoCh12G007860Cucurbita maxima (Rimu)cmacmoB177
CmoCh12G007860Wild cucumber (PI 183967)cmocpiB148
CmoCh12G007860Cucumber (Chinese Long) v2cmocuB148
CmoCh12G007860Watermelon (Charleston Gray)cmowcgB138
CmoCh12G007860Watermelon (97103) v1cmowmB154
CmoCh12G007860Bottle gourd (USVL1VR-Ls)cmolsiB158