CmoCh12G007630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaCnng48510D protein
LocationCmo_Chr12 : 6138462 .. 6139273 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGTAGAGCTATCGCGCACGGGCGAAGGTAATGGAATTGTGAAACCCAGTTGTAGAGGTTCAGGAGATGCACTTTTTGTACTTGTAGTACTGTCCAAGCTCAGAGGGAATAATATCTTTCTTCTTTCTACCTTTCTTTCCCATGACGACTAGTAAGGGCAAATAACAAATTTCACTTCGAATTCTGGACCTCAACATCCTACTACTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAATGCGGCACGAAGCCGCTGACGCTGAGTCGGCTCCTATGCCACTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGGTTCTCTCCGTAGCGCGTCATGAGCACCGGGGGGCGATTGAGCTACTCAAGCGAACCGCCCTACCTAACTACAAGATAGGGACAAAAGGGAGAAGGTTGTGAAGGTGGCCTCGTTATCCACACCTCTGGTCATAGGAGGACCGACCTGGGTTTTCATGACCGTTAGCAGGTCCTGGAGTGCTTGTCAAGGGCTCCCGCCCATACCCTGGGGTGATCATCACCCCCTGCACCTCACTCACATCTCGACACAGTGGAACGTGTAACCCGCATGCAGTCTCATTCTACTACATTTGTTCCTATAATCCATAGTCTAACAGAACGCAGTAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCCGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAG

mRNA sequence

ATGCCTGGTAGAGCTATCGCGCACGGGCGAAGGGCAAATAACAAATTTCACTTCGAATTCTGGACCTCAACATCCTACTACTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAATGCGGCACGAAGCCGCTGACGCTGAGTCGGCTCCTATGCCACTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGAACGCAGTAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCCGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAG

Coding sequence (CDS)

ATGCCTGGTAGAGCTATCGCGCACGGGCGAAGGGCAAATAACAAATTTCACTTCGAATTCTGGACCTCAACATCCTACTACTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTCCAATGCGGCACGAAGCCGCTGACGCTGAGTCGGCTCCTATGCCACTAGCTATGCCCTGCTTGGTCCCCCGACACGGTGGAGAACGCAGTAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCCGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGAGCATAGCATAG
Homology
[Close]
BLAST of CmoCh12G007630 vs. TrEMBL
Match: A0A078JK64_BRANA (BnaCnng48510D protein OS=Brassica napus GN=BnaCnng48510D PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-27
Identity = 75/130 (57.69%), Postives = 79/130 (60.77%), Query Frame = 1 

Query: 35  IGNERRSGGTCGTTYWITPMRHEAADAESAPMPLAMPCLVPRHGG------ERSSEGQPA 94
           IGNERRSGGTCGTTYWITP+RHEAADAESAPMPLAMPCLVPRHGG      E  ++G+  
Sbjct: 264 IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVAGHEHRAKGRSH 323

Query: 95  HT--------------------------------------ASGEDGTTGKDRPAKTPQAR 121
            T                                      ASGEDGTTGKDR AKTPQAR
Sbjct: 324 STERRGLPVKGASAYPGPNRRQRRGALATRLKGEERNSHTASGEDGTTGKDRLAKTPQAR 383

[Close]
BLAST of CmoCh12G007630 vs. TrEMBL
Match: A0A0D2ZTM7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.7e-20
Identity = 63/129 (48.84%), Postives = 70/129 (54.26%), Query Frame = 1 

Query: 35  IGNERRSGGTCGTTYWITPMRHEAADAESAPMPLAMPCLVPRHGG------ERSSEGQPA 94
           IGNERRSGGTCGTTYWITP+RHEAADAESAPMPLAMPCLVPRHGG      E  ++G+  
Sbjct: 263 IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVAGHEHRAKGRSH 322

Query: 95  HT--------------------------------------ASGEDGTTGKDR-PAKTPQA 119
            T                                      ASGEDGTTGKDR   + P  
Sbjct: 323 STERRGLPVKGASAYPGPNRRQRRGALATRLKGEERNSHTASGEDGTTGKDRLYRQRPSG 382

[Close]
BLAST of CmoCh12G007630 vs. TrEMBL
Match: W9QM76_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 62/126 (49.21%), Postives = 67/126 (53.17%), Query Frame = 1 

Query: 35  IGNERRSGGTCGTTYWITPMRHEAADAESAPMPLAMPCLVPRHGGER-----SSEGQPAH 94
           IGNERRSGGTC TTYWITP++HEAADAESAPMPLAMPCLVPR+GG       S +G  A+
Sbjct: 51  IGNERRSGGTCRTTYWITPVQHEAADAESAPMPLAMPCLVPRYGGALVGPGVSVKGASAY 110

Query: 95  T----------------------------------------------ASGEDGTTGKDRP 110
                                                          ASGEDGTTGKDR 
Sbjct: 111 PGVIITTYTSHLGTVERVTRLLSHSTTFVPVIHSLTERSSEGQPAHTASGEDGTTGKDRL 170

[Close]
BLAST of CmoCh12G007630 vs. TrEMBL
Match: V9P5B5_SALMI (Uncharacterized protein OS=Salvia miltiorrhiza GN=orf103b PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 80  ERSSEGQPAHTASGEDGTTGKDRPAKTPQARSVVGLRRGSIA 122
           ERSSEGQPAHTASGEDGTTGKDR AKTPQARSVVGLRRGSIA
Sbjct: 62  ERSSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGSIA 103

[Close]
BLAST of CmoCh12G007630 vs. TrEMBL
Match: A0A103YIR5_CYNCS (UDP-glucuronosyl/UDP-glucosyltransferase OS=Cynara cardunculus var. scolymus GN=Ccrd_011728 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 80   ERSSEGQPAHTASGEDGTTGKDRPAKTPQARSV 113
            ERSSEGQPAH ASGEDGTTGKDR AKTPQARSV
Sbjct: 1307 ERSSEGQPAHIASGEDGTTGKDRLAKTPQARSV 1339

[Close]
BLAST of CmoCh12G007630 vs. NCBI nr
Match: gi|674868836|emb|CDY65732.1| (BnaCnng48510D [Brassica napus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 75/130 (57.69%), Postives = 79/130 (60.77%), Query Frame = 1 

Query: 35  IGNERRSGGTCGTTYWITPMRHEAADAESAPMPLAMPCLVPRHGG------ERSSEGQPA 94
           IGNERRSGGTCGTTYWITP+RHEAADAESAPMPLAMPCLVPRHGG      E  ++G+  
Sbjct: 264 IGNERRSGGTCGTTYWITPVRHEAADAESAPMPLAMPCLVPRHGGGSVAGHEHRAKGRSH 323

Query: 95  HT--------------------------------------ASGEDGTTGKDRPAKTPQAR 121
            T                                      ASGEDGTTGKDR AKTPQAR
Sbjct: 324 STERRGLPVKGASAYPGPNRRQRRGALATRLKGEERNSHTASGEDGTTGKDRLAKTPQAR 383

[Close]
BLAST of CmoCh12G007630 vs. NCBI nr
Match: gi|703078659|ref|XP_010090950.1| (hypothetical protein L484_007585 [Morus notabilis])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 62/126 (49.21%), Postives = 67/126 (53.17%), Query Frame = 1 

Query: 35  IGNERRSGGTCGTTYWITPMRHEAADAESAPMPLAMPCLVPRHGGER-----SSEGQPAH 94
           IGNERRSGGTC TTYWITP++HEAADAESAPMPLAMPCLVPR+GG       S +G  A+
Sbjct: 51  IGNERRSGGTCRTTYWITPVQHEAADAESAPMPLAMPCLVPRYGGALVGPGVSVKGASAY 110

Query: 95  T----------------------------------------------ASGEDGTTGKDRP 110
                                                          ASGEDGTTGKDR 
Sbjct: 111 PGVIITTYTSHLGTVERVTRLLSHSTTFVPVIHSLTERSSEGQPAHTASGEDGTTGKDRL 170

[Close]
BLAST of CmoCh12G007630 vs. NCBI nr
Match: gi|570700012|ref|YP_008992385.1| (hypothetical protein Salmi_Mp140 (mitochondrion) [Salvia miltiorrhiza])

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 80  ERSSEGQPAHTASGEDGTTGKDRPAKTPQARSVVGLRRGSIA 122
           ERSSEGQPAHTASGEDGTTGKDR AKTPQARSVVGLRRGSIA
Sbjct: 62  ERSSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGSIA 103

[Close]
BLAST of CmoCh12G007630 vs. NCBI nr
Match: gi|976925995|gb|KVI09874.1| (UDP-glucuronosyl/UDP-glucosyltransferase [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 80   ERSSEGQPAHTASGEDGTTGKDRPAKTPQARSV 113
            ERSSEGQPAH ASGEDGTTGKDR AKTPQARSV
Sbjct: 1307 ERSSEGQPAHIASGEDGTTGKDRLAKTPQARSV 1339

[Close]
BLAST of CmoCh12G007630 vs. NCBI nr
Match: gi|870847185|gb|KMS99593.1| (hypothetical protein BVRB_1g022400 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 80  ERSSEGQPAHTASGEDGTTGKDRPAKTPQARSVVGLRRGSI 121
           ERSSEGQPAHTASGEDGTTGKDR AKT QARSV   + G +
Sbjct: 72  ERSSEGQPAHTASGEDGTTGKDRLAKTLQARSVTHPKAGGL 112

The following BLAST results are available for this feature:
BLAST of CmoCh12G007630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078JK64_BRANA8.5e-2757.69BnaCnng48510D protein OS=Brassica napus GN=BnaCnng48510D PE=4 SV=1[more]
A0A0D2ZTM7_BRAOL7.7e-2048.84Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
W9QM76_9ROSA1.9e-1849.21Uncharacterized protein OS=Morus notabilis GN=L484_007585 PE=4 SV=1[more]
V9P5B5_SALMI3.5e-1297.62Uncharacterized protein OS=Salvia miltiorrhiza GN=orf103b PE=4 SV=1[more]
A0A103YIR5_CYNCS1.3e-0693.94UDP-glucuronosyl/UDP-glucosyltransferase OS=Cynara cardunculus var. scolymus GN=... [more]
BLAST of CmoCh12G007630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|674868836|emb|CDY65732.1|1.2e-2657.69BnaCnng48510D [Brassica napus][more]
gi|703078659|ref|XP_010090950.1|2.7e-1849.21hypothetical protein L484_007585 [Morus notabilis][more]
gi|570700012|ref|YP_008992385.1|5.0e-1297.62hypothetical protein Salmi_Mp140 (mitochondrion) [Salvia miltiorrhiza][more]
gi|976925995|gb|KVI09874.1|1.8e-0693.94UDP-glucuronosyl/UDP-glucosyltransferase [Cynara cardunculus var. scolymus][more]
gi|870847185|gb|KMS99593.1|1.8e-0678.05hypothetical protein BVRB_1g022400 [Beta vulgaris subsp. vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007630.1CmoCh12G007630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G007630CsaV3_UNG208490Cucumber (Chinese Long) v3cmocucB0194
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007630Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007630Cucurbita maxima (Rimu)cmacmoB003