CmoCh12G007490 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S19
LocationCmo_Chr12 : 5856410 .. 5856953 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGGTGCATATATGGCACGAAAAGGAAATCTGATTGAGCATTTCATATTCACTTTGATTTGAGAATCCAGTTTCTAGTAAAATCAGATATCTTATTCTATCAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA

mRNA sequence

ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA

Coding sequence (CDS)

ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA
Homology
[Close]
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match: RT19_PETHY (Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-39
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRD L NRKIWSRRSSILP+FVD  VRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE 94
          TEG+VGHKFGEFA TRKRR SRTNIG G+KRG+
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRGK 93

[Close]
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-26
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
           M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFASTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match: RT19_MARPO (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 4  RSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEG 63
          RSIWKG FVD  L + KK     +  +IWSRRS ILP+FV    +IYNGK  V  KITE 
Sbjct: 3  RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 64 RVGHKFGEFASTRK 78
           VGHKFGEFASTRK
Sbjct: 63 MVGHKFGEFASTRK 71

[Close]
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match: RS19_RHORT (30S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 4  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 63
          RS+WKG F+D +LL + +K R    N   KIWSRRS+I+P+FV  +  +YNG+  V   +
Sbjct: 3  RSVWKGPFIDGYLLNKAEKARSSGRNEVIKIWSRRSTIMPQFVGLTFGVYNGQKFVPVLV 62

Query: 64 TEGRVGHKFGEFASTR 77
          TE  VGHKFGEFA TR
Sbjct: 63 TEQMVGHKFGEFAPTR 78

[Close]
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match: RS19_BRUA2 (30S ribosomal protein S19 OS=Brucella abortus (strain 2308) GN=rpsS PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 4  RSIWKGSFVDAFLLRMKKK-RDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 63
          RS+WKG FVD +LL+  +K R+   N   K+WSRRS+ILP+FV  +  +YNG   V   +
Sbjct: 3  RSVWKGPFVDGYLLKKAEKVREGGRNEVIKMWSRRSTILPQFVGLTFGVYNGNKHVPVSV 62

Query: 64 TEGRVGHKFGEFASTR 77
          +E  VGHKFGEFA TR
Sbjct: 63 SEEMVGHKFGEFAPTR 78

[Close]
BLAST of CmoCh12G007490 vs. TrEMBL
Match: D5I3F0_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. TrEMBL
Match: D5I3G6_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. TrEMBL
Match: D5I3A0_CITLA (Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGR+GHKFGEFASTRKRRLSRTNIG GKK G
Sbjct: 61 TEGRIGHKFGEFASTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. TrEMBL
Match: D5I3D4_CITLA (Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.3e-41
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGRVGHKFGEFA TRKRRLSRTNIG GKK G
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. TrEMBL
Match: A0A068BHM7_BATMA (Ribosomal protein S19 OS=Batis maritima GN=rps19 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRD LLNRKIWSRRSSILP+FVD SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLLNRKIWSRRSSILPEFVDCSVRIYNGKTPVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE 94
          TEG+VGHKFGEFA TRKRRLSRTNIG G+KRG+
Sbjct: 61 TEGKVGHKFGEFAFTRKRRLSRTNIGPGRKRGK 93

[Close]
BLAST of CmoCh12G007490 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-27
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
           M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFASTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of CmoCh12G007490 vs. NCBI nr
Match: gi|295311705|ref|YP_003587380.1| (ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. NCBI nr
Match: gi|295311704|ref|YP_003587364.1| (ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. NCBI nr
Match: gi|295311660|ref|YP_003587230.1| (ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 179.9 bits (455), Expect = 3.3e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGR+GHKFGEFASTRKRRLSRTNIG GKK G
Sbjct: 61 TEGRIGHKFGEFASTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. NCBI nr
Match: gi|295311661|ref|YP_003587264.1| (ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 175.6 bits (444), Expect = 6.2e-41
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGRVGHKFGEFA TRKRRLSRTNIG GKK G
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. NCBI nr
Match: gi|661813575|ref|YP_009045765.1| (ribosomal protein S19 (mitochondrion) [Batis maritima])

HSP 1 Score: 170.6 bits (431), Expect = 2.0e-39
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRD LLNRKIWSRRSSILP+FVD SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLLNRKIWSRRSSILPEFVDCSVRIYNGKTPVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE 94
          TEG+VGHKFGEFA TRKRRLSRTNIG G+KRG+
Sbjct: 61 TEGKVGHKFGEFAFTRKRRLSRTNIGPGRKRGK 93

The following BLAST results are available for this feature:
BLAST of CmoCh12G007490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT19_PETHY1.5e-3987.10Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2[more]
RT19_ARATH9.6e-2674.0340S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 S... [more]
RT19_MARPO1.8e-1662.16Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2[more]
RS19_RHORT1.1e-1352.6330S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.... [more]
RS19_BRUA21.4e-1352.6330S ribosomal protein S19 OS=Brucella abortus (strain 2308) GN=rpsS PE=3 SV=1[more]
BLAST of CmoCh12G007490 vs. TrEMBL
Match NameE-valueIdentityDescription
D5I3F0_CUCPE2.7e-4395.79Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-1 PE=3 SV=1[more]
D5I3G6_CUCPE2.7e-4395.79Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-2 PE=3 SV=1[more]
D5I3A0_CITLA2.3e-4295.65Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-1 PE=3 SV=1[more]
D5I3D4_CITLA4.3e-4194.57Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-2 PE=3 SV=1[more]
A0A068BHM7_BATMA1.4e-3990.32Ribosomal protein S19 OS=Batis maritima GN=rps19 PE=3 SV=1[more]
BLAST of CmoCh12G007490 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47320.15.4e-2774.03 ribosomal protein S19[more]
BLAST of CmoCh12G007490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|295311705|ref|YP_003587380.1|3.9e-4395.79ribosomal protein S19 [Cucurbita pepo][more]
gi|295311704|ref|YP_003587364.1|3.9e-4395.79ribosomal protein S19 [Cucurbita pepo][more]
gi|295311660|ref|YP_003587230.1|3.3e-4295.65ribosomal protein S19 [Citrullus lanatus][more]
gi|295311661|ref|YP_003587264.1|6.2e-4194.57ribosomal protein S19 [Citrullus lanatus][more]
gi|661813575|ref|YP_009045765.1|2.0e-3990.32ribosomal protein S19 (mitochondrion) [Batis maritima][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002222Ribosomal_S19
IPR020934Ribosomal_S19_CS
IPR023575Ribosomal_S19_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007490.1CmoCh12G007490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 63..78
score: 5.7E-13coord: 51..63
score: 5.7E-13coord: 31..50
score: 5.7
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 2..90
score: 18
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 1..100
score: 2.0
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 4..78
score: 2.5
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 51..75
scor
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 3..81
score: 7.4
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 3..79
score: 3.66
NoneNo IPR availablePANTHERPTHR11880:SF837S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 1..100
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007490Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007490Cucurbita maxima (Rimu)cmacmoB003