CmoCh12G007410 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNAD(P)H-quinone oxidoreductase subunit 1 (1.6.5.-)
LocationCmo_Chr12 : 5842195 .. 5842872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACGGATGAGGGGAAAATCTCATGTACGGTTTTGTAATAGCGATGAGAACAGTGATGGTATTACCGACTATGGTTATAGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGGTATCAAATTTAGTTGATTTTCTCTTGCTTGCTTCCTATCTAAATTAGTTTCTTCGTTATTTGTAACGGTTCTTTACTTCGGTGGGTGGGATATCTCCATCTTATGAATTGAAATAAATAAATAAAGCGTATTCAGGCAGTCTTTGGAATGACAATTAGTCTCTTTATTAGATTAGGCTAAAACTTCTTTCTTTTTGTTCATTTCTATAGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

mRNA sequence

ATGGCCACGGATGAGGGGAAAATCTCATGTACGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

Coding sequence (CDS)

ATGGCCACGGATGAGGGGAAAATCTCATGTACGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA
Homology
[Close]
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match: NU1C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena GN=ndhA PE=3 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-16
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 184 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 243

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTK-QTNNF----L 124
           TE S   FG       ++   +    TI Y  GW   +P   +  L  K QT+      +
Sbjct: 244 TEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNLSIPYIPITELFEKNQTSEVFGTTI 303

[Close]
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-15
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGFVI  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFVIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISL 100
           TE S   FG       ++   +    T+ Y  GW   +P  L
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIL 287

[Close]
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match: NU1C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-15
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP 97
           TE S   FG       ++   +    T+ Y  GW   LP
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSLP 284

[Close]
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-15
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREFLAAI-----PIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+  L        PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGLGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELVAGYQ 245

[Close]
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-15
Identity = 61/127 (48.03%), Postives = 70/127 (55.12%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDI+EAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIIEAQSKYGFWGWNLWRQPIGFLIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESSFGKKMDFTPTKN--------RPTIQYPLGWKFLLPISLLNPLLTKQTNNFLSTLFT 125
           TE S  K   F  T            TI Y  GW   +P     PL   + NN      T
Sbjct: 246 TEYSGIKFAFFYITSYFNLLVSSLFVTILYLGGWNMSIPYIDFLPLF--EINNVGGIFRT 305

[Close]
BLAST of CmoCh12G007410 vs. TrEMBL
Match: A0A0K1L5M4_TRIMC (NADH-quinone oxidoreductase subunit H OS=Trillium maculatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPLLTKQTNNFLSTLF 130
           TE S            ++   +    T+ Y  GW F +P IS+  P+ T         +F
Sbjct: 246 TEYSGIKYGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISISEPIGTNGVLGMTIGIF 305

Query: 131 -TVKEYYISRYYSDTIR 133
            T+ + Y+  + S T R
Sbjct: 306 ITLAKAYLFLFISITTR 322

[Close]
BLAST of CmoCh12G007410 vs. TrEMBL
Match: E5KUE9_CORLA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Corynocarpus laevigatus GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 63/140 (45.00%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPL--LTKQTNNF---L 130
           TE S   FG       ++   +    T+ Y  GW F +P  L++ L  + K +  F   +
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDFSIPYILVSELFEINKTSGVFGITI 305

Query: 131 STLFTVKEYYISRYYSDTIR 133
               T+ + Y+  + S T R
Sbjct: 306 GIFITLAKTYLFLFISITTR 325

[Close]
BLAST of CmoCh12G007410 vs. TrEMBL
Match: A0A0F7LAQ2_9LILI (NADH-quinone oxidoreductase subunit H OS=Trillium cuneatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPLLTKQTNNFLSTLF 130
           TE S            ++   +    T+ Y  GW F +P IS+  P+ T         +F
Sbjct: 246 TEYSGIKYGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISISEPIGTNGVLGMTIGIF 305

Query: 131 -TVKEYYISRYYSDTIR 133
            T+ + Y+  + S T R
Sbjct: 306 ITLAKAYLFLFISITTR 322

[Close]
BLAST of CmoCh12G007410 vs. TrEMBL
Match: A0A0K1L6J0_9LILI (NADH-quinone oxidoreductase subunit H OS=Trillium tschonoskii GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPLLTKQTNNFLSTLF 130
           TE S            ++   +    T+ Y  GW F +P IS+  P+ T         +F
Sbjct: 246 TEYSGIKYGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISIPEPIGTNGVLGMTIGIF 305

Query: 131 -TVKEYYISRYYSDTIR 133
            T+ + Y+  + S T R
Sbjct: 306 STLAKAYLFLFISITTR 322

[Close]
BLAST of CmoCh12G007410 vs. TrEMBL
Match: V9P800_9ROSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hypseocharis bilobata GN=ndhA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 64/143 (44.76%), Postives = 78/143 (54.55%), Query Frame = 1 

Query: 8   ISCTKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVA 67
           IS + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVA
Sbjct: 182 ISLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVA 241

Query: 68  GYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLL-TKQTNNFLS 127
           GYQTE S   FG       ++   +    TI Y  GW   +P   L  L   K+      
Sbjct: 242 GYQTEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNIAIPYIFLPQLFEIKRAGGIFG 301

Query: 128 T----LFTVKEYYISRYYSDTIR 133
           T      T+ + Y+  + S T R
Sbjct: 302 TTIALFITLAKTYLFLFISITTR 324

[Close]
BLAST of CmoCh12G007410 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 80.5 bits (197), Expect = 9.0e-16
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + S STVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEEL+AGYQ
Sbjct: 186 SNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP-ISLL 101
           TE S   FG       ++   +    T+ Y  GW   +P IS+L
Sbjct: 246 TEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPYISIL 289

[Close]
BLAST of CmoCh12G007410 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1 

Query: 10  CTKSSSTVDIVEAQSREFLAAIPIG--FVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

[Close]
BLAST of CmoCh12G007410 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1 

Query: 10  CTKSSSTVDIVEAQSREFLAAIPIG--FVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

[Close]
BLAST of CmoCh12G007410 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1 

Query: 10  CTKSSSTVDIVEAQSREFLAAIPIG--FVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

[Close]
BLAST of CmoCh12G007410 vs. NCBI nr
Match: gi|827046324|ref|YP_009142625.1| (NADH-plastoquinone oxidoreductase chain 1 (plastid) [Trillium cuneatum])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPLLTKQTNNFLSTLF 130
           TE S            ++   +    T+ Y  GW F +P IS+  P+ T         +F
Sbjct: 246 TEYSGIKYGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISISEPIGTNGVLGMTIGIF 305

Query: 131 -TVKEYYISRYYSDTIR 133
            T+ + Y+  + S T R
Sbjct: 306 ITLAKAYLFLFISITTR 322

[Close]
BLAST of CmoCh12G007410 vs. NCBI nr
Match: gi|317046226|ref|YP_004072515.1| (NADH dehydrogenase subunit 1 [Corynocarpus laevigata])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 63/140 (45.00%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPL--LTKQTNNF---L 130
           TE S   FG       ++   +    T+ Y  GW F +P  L++ L  + K +  F   +
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDFSIPYILVSELFEINKTSGVFGITI 305

Query: 131 STLFTVKEYYISRYYSDTIR 133
               T+ + Y+  + S T R
Sbjct: 306 GIFITLAKTYLFLFISITTR 325

[Close]
BLAST of CmoCh12G007410 vs. NCBI nr
Match: gi|918020923|ref|YP_009163331.1| (NADH-plastoquinone oxidoreductase subunit 1 (plastid) [Trillium tschonoskii])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPLLTKQTNNFLSTLF 130
           TE S            ++   +    T+ Y  GW F +P IS+  P+ T         +F
Sbjct: 246 TEYSGIKYGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISIPEPIGTNGVLGMTIGIF 305

Query: 131 -TVKEYYISRYYSDTIR 133
            T+ + Y+  + S T R
Sbjct: 306 STLAKAYLFLFISITTR 322

[Close]
BLAST of CmoCh12G007410 vs. NCBI nr
Match: gi|938339501|ref|YP_009171654.1| (NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Elaeagnus macrophylla])

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 56/112 (50.00%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 11  TKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTKQTN 110
           TE S   FG       ++   +    T+ Y  GW   +P   ++ L    TN
Sbjct: 246 TEYSGIKFGFFYIASYLNLLVSSLFVTVLYLGGWNLSIPYPFVSDLFEINTN 297

[Close]
BLAST of CmoCh12G007410 vs. NCBI nr
Match: gi|570880260|ref|YP_008994533.1| (NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) (chloroplast) [Hypseocharis bilobata])

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 64/143 (44.76%), Postives = 78/143 (54.55%), Query Frame = 1 

Query: 8   ISCTKSSSTVDIVEAQSREF-----LAAIPIGFVILCLSSLAECERLPFDLPEAEEELVA 67
           IS + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVA
Sbjct: 182 ISLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVA 241

Query: 68  GYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLL-TKQTNNFLS 127
           GYQTE S   FG       ++   +    TI Y  GW   +P   L  L   K+      
Sbjct: 242 GYQTEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNIAIPYIFLPQLFEIKRAGGIFG 301

Query: 128 T----LFTVKEYYISRYYSDTIR 133
           T      T+ + Y+  + S T R
Sbjct: 302 TTIALFITLAKTYLFLFISITTR 324

The following BLAST results are available for this feature:
BLAST of CmoCh12G007410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU1C_NUPAD8.5e-1646.56NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena GN=ndhA... [more]
NU1C_CUCSA1.9e-1553.92NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU1C_DAUCA1.9e-1553.54NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA... [more]
NU1C_POPTR2.5e-1571.88NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa G... [more]
NU1C_PELHO2.5e-1548.03NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum ... [more]
BLAST of CmoCh12G007410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K1L5M4_TRIMC1.5e-1444.53NADH-quinone oxidoreductase subunit H OS=Trillium maculatum GN=ndhA PE=3 SV=1[more]
E5KUE9_CORLA1.5e-1445.00NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Corynocarpus laevigat... [more]
A0A0F7LAQ2_9LILI1.5e-1444.53NADH-quinone oxidoreductase subunit H OS=Trillium cuneatum GN=ndhA PE=3 SV=1[more]
A0A0K1L6J0_9LILI1.9e-1444.53NADH-quinone oxidoreductase subunit H OS=Trillium tschonoskii GN=ndhA PE=3 SV=1[more]
V9P800_9ROSI2.5e-1444.76NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hypseocharis bilobata... [more]
BLAST of CmoCh12G007410 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01100.19.0e-1651.92ATCG01100.1 NADH dehydrogenase family protein[more]
ATMG01120.13.8e-0634.62ATMG01120.1 NADH dehydrogenase 1B[more]
ATMG00516.13.8e-0634.62ATMG00516.1 NADH dehydrogenase 1C[more]
ATMG01275.13.8e-0634.62ATMG01275.1 NADH dehydrogenase 1A[more]
BLAST of CmoCh12G007410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|827046324|ref|YP_009142625.1|2.1e-1444.53NADH-plastoquinone oxidoreductase chain 1 (plastid) [Trillium cuneatum][more]
gi|317046226|ref|YP_004072515.1|2.1e-1445.00NADH dehydrogenase subunit 1 [Corynocarpus laevigata][more]
gi|918020923|ref|YP_009163331.1|2.7e-1444.53NADH-plastoquinone oxidoreductase subunit 1 (plastid) [Trillium tschonoskii][more]
gi|938339501|ref|YP_009171654.1|3.6e-1450.00NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Elaeagnus macrophylla... [more]
gi|570880260|ref|YP_008994533.1|3.6e-1444.76NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) (chloroplast) [Hypseoc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001694NADH_UbQ_OxRdtase_su1/FPO
IPR018086NADH_UbQ_OxRdtase_su1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007410.1CmoCh12G007410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 13..69
score: 1.8
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 9..69
score: 2.4
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved sitePROSITEPS00668COMPLEX1_ND1_2coord: 50..63
scor
NoneNo IPR availablePANTHERPTHR11432:SF7NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 1, CHLOROPLASTICcoord: 13..69
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007410Cucurbita moschata (Rifu)cmocmoB135
CmoCh12G007410Cucurbita maxima (Rimu)cmacmoB003