CmoCh12G006880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G006880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr12 : 4938439 .. 4938639 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGTGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

mRNA sequence

ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGTGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGTGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Homology

[Close]

BLAST of CmoCh12G006880 vs. TrEMBL
Match: A0A0P1AX64_9STRA (Rrna intron-encoded homing endonuclease OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-28
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1


Query: 1  IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
          IIAIVGL+RGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEV GSWRRGRFAA DVAR 
Sbjct: 5  IIAIVGLKRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVLGSWRRGRFAARDVARI 64

Query: 61 PLNLII 67
          PLNLII
Sbjct: 65 PLNLII 70

[Close]

BLAST of CmoCh12G006880 vs. TrEMBL
Match: A0A0R0GQW8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G012700 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-26
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
          IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG  RR RFAA DV RS
Sbjct: 34 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDVVRS 93

Query: 61 PLNLII 67
          PLNLII
Sbjct: 94 PLNLII 99

[Close]

BLAST of CmoCh12G006880 vs. TrEMBL
Match: A0A0R0GR40_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G021200 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-24
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 4  IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARSPLN 63
          IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG  RR RFAA DV RSPLN
Sbjct: 7  IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLN 66

Query: 64 LII 67
          LII
Sbjct: 67 LII 69

[Close]

BLAST of CmoCh12G006880 vs. TrEMBL
Match: A0A072TUX5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0120 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.1e-23
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1  IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVAR 60
          IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG  RRGRFAA DV R
Sbjct: 34 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAARDVVR 92

[Close]

BLAST of CmoCh12G006880 vs. TrEMBL
Match: M7YPV1_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_00003 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 11 IPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARSPLNLII 67
          +PSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGS RRGRFAA DVARSPLNLII
Sbjct: 1  MPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAPDVARSPLNLII 56

[Close]

BLAST of CmoCh12G006880 vs. NCBI nr
Match: gi|823127874|ref|XP_012440607.1| (PREDICTED: uncharacterized protein LOC105765883 [Gossypium raimondii])

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-28
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 1


Query: 1   IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
           IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGS RRGRFAA DVARS
Sbjct: 187 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAARDVARS 246

Query: 61  PLNLII 67
           PLNLII
Sbjct: 247 PLNLII 252

[Close]

BLAST of CmoCh12G006880 vs. NCBI nr
Match: gi|953490969|emb|CEG46101.1| (rrna intron-encoded homing endonuclease [Plasmopara halstedii])

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1


Query: 1  IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
          IIAIVGL+RGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEV GSWRRGRFAA DVAR 
Sbjct: 5  IIAIVGLKRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVLGSWRRGRFAARDVARI 64

Query: 61 PLNLII 67
          PLNLII
Sbjct: 65 PLNLII 70

[Close]

BLAST of CmoCh12G006880 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = 1


Query: 1   IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
           IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGS RRG FAA DVARS
Sbjct: 725 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 784

Query: 61  PLNLII 67
           PLNLII
Sbjct: 785 PLNLII 790

[Close]

BLAST of CmoCh12G006880 vs. NCBI nr
Match: gi|947068861|gb|KRH17752.1| (hypothetical protein GLYMA_13G012700 [Glycine max])

HSP 1 Score: 124.4 bits (311), Expect = 7.4e-26
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARS 60
          IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG  RR RFAA DV RS
Sbjct: 34 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDVVRS 93

Query: 61 PLNLII 67
          PLNLII
Sbjct: 94 PLNLII 99

[Close]

BLAST of CmoCh12G006880 vs. NCBI nr
Match: gi|947068957|gb|KRH17848.1| (hypothetical protein GLYMA_13G021200 [Glycine max])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 4  IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAACDVARSPLN 63
          IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG  RR RFAA DV RSPLN
Sbjct: 7  IVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLN 66

Query: 64 LII 67
          LII
Sbjct: 67 LII 69

The following BLAST results are available for this feature:

BLAST of CmoCh12G006880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P1AX64_9STRA	7.2e-28	93.94	Rrna intron-encoded homing endonuclease OS=Plasmopara halstedii PE=4 SV=1	[more]
A0A0R0GQW8_SOYBN	5.1e-26	92.42	Uncharacterized protein OS=Glycine max GN=GLYMA_13G012700 PE=4 SV=1	[more]
A0A0R0GR40_SOYBN	1.3e-24	92.06	Uncharacterized protein OS=Glycine max GN=GLYMA_13G021200 PE=4 SV=1	[more]
A0A072TUX5_MEDTR	9.1e-23	93.22	Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0120 PE=4 SV=1	[more]
M7YPV1_TRIUA	2.0e-22	94.64	Uncharacterized protein OS=Triticum urartu GN=TRIUR3_00003 PE=4 SV=1	[more]

BLAST of CmoCh12G006880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823127874\|ref\|XP_012440607.1\|	6.0e-28	96.97	PREDICTED: uncharacterized protein LOC105765883 [Gossypium raimondii]	[more]
gi\|953490969\|emb\|CEG46101.1\|	1.0e-27	93.94	rrna intron-encoded homing endonuclease [Plasmopara halstedii]	[more]
gi\|694380941\|ref\|XP_009366572.1\|	5.1e-27	95.45	PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri]	[more]
gi\|947068861\|gb\|KRH17752.1\|	7.4e-26	92.42	hypothetical protein GLYMA_13G012700 [Glycine max]	[more]
gi\|947068957\|gb\|KRH17848.1\|	1.8e-24	92.06	hypothetical protein GLYMA_13G021200 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006880.1	CmoCh12G006880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G006880	Cucurbita maxima (Rimu)	cmacmoB771