CmoCh12G006850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G006850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Senescence-associated protein, putative
Location	Cmo_Chr12 : 4934273 .. 4934758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTGCATTGGAGCACGTTCAATCATCAACACTTAACATGTAGAATCGTTACTTTTCCTATAACCTCCTTGACTCTTGAAAGAAATAAATTTGTTTATTGTGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCGGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

mRNA sequence

ATGGCCTTGCATTGGAGCACGTTCAATCATCAACACTTAACATGTAGAATCGTTACTTTTCCTATAACCTCCTTGACTCTTGAAAGAAATAAATTTGTTTATTGTGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCGGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Coding sequence (CDS)

ATGGCCTTGCATTGGAGCACGTTCAATCATCAACACTTAACATGTAGAATCGTTACTTTTCCTATAACCTCCTTGACTCTTGAAAGAAATAAATTTGTTTATTGTGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCGGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Homology

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BLAST of CmoCh12G006850 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.6e-41
Identity = 87/116 (75.00%), Postives = 93/116 (80.17%), Query Frame = 1


Query: 37  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLS 96
           G    +  RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     
Sbjct: 81  GEGRIKATRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGH 140

Query: 97  QRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 153
           QRHVPLG   PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 141 QRHVPLGGRGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 196

[Close]

BLAST of CmoCh12G006850 vs. TrEMBL
Match: I1LXQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.1e-41
Identity = 86/108 (79.63%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGA 104
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG 
Sbjct: 81  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 140

Query: 105 ERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 153
             PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 141 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 188

[Close]

BLAST of CmoCh12G006850 vs. TrEMBL
Match: I1LXT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.1e-41
Identity = 86/108 (79.63%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGA 104
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG 
Sbjct: 80  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 139

Query: 105 ERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 153
             PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 140 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 187

[Close]

BLAST of CmoCh12G006850 vs. TrEMBL
Match: A0A0P6CHZ2_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 71  QRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEA 130
           QRILP A+WEL + AA    P +GL QRHVPLGA  PLL VGN+A GA VASSPDSDLEA
Sbjct: 60  QRILPAARWELYFMAAHAARPPRGLGQRHVPLGARGPLLRVGNRAAGARVASSPDSDLEA 119

Query: 131 FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 162
           FSHNPAHGSFAPLAFQPSAMT C NQRFLSY
Sbjct: 120 FSHNPAHGSFAPLAFQPSAMTKCVNQRFLSY 150

[Close]

BLAST of CmoCh12G006850 vs. TrEMBL
Match: W1PVN2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 78/130 (60.00%), Postives = 83/130 (63.85%), Query Frame = 1


Query: 37  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQ-----WELRYKAALETHP 96
           G DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP AQ      E+ + A+     
Sbjct: 15  GGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSASTVVAF 74

Query: 97  SQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMT 156
           +   S   V     +P     N   G     S DSDLEAFSHNPAHGSFAPLAFQPSAMT
Sbjct: 75  TNDTSPWRV---RAQPYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSFAPLAFQPSAMT 134

Query: 157 NCANQRFLSY 162
            C NQ FLSY
Sbjct: 135 ICLNQWFLSY 141

[Close]

BLAST of CmoCh12G006850 vs. NCBI nr
Match: gi|548854219|gb|ERN12143.1| (hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda])

HSP 1 Score: 133.3 bits (334), Expect = 3.9e-28
Identity = 78/130 (60.00%), Postives = 83/130 (63.85%), Query Frame = 1


Query: 37  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQ-----WELRYKAALETHP 96
           G DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP AQ      E+ + A+     
Sbjct: 15  GGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSASTVVAF 74

Query: 97  SQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMT 156
           +   S   V     +P     N   G     S DSDLEAFSHNPAHGSFAPLAFQPSAMT
Sbjct: 75  TNDTSPWRV---RAQPYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSFAPLAFQPSAMT 134

Query: 157 NCANQRFLSY 162
            C NQ FLSY
Sbjct: 135 ICLNQWFLSY 141

[Close]

BLAST of CmoCh12G006850 vs. NCBI nr
Match: gi|954297013|gb|KRX86393.1| (hypothetical protein T12_13365, partial [Trichinella patagoniensis])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 102 LGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 161
           LGA RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 1   LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 60

[Close]

BLAST of CmoCh12G006850 vs. NCBI nr
Match: gi|966068351|gb|KTE89979.1| (hypothetical protein AT727_24830 [Desulfitobacterium hafniense])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 102 LGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 161
           LG +RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 13  LGGQRPLLRVGNRATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 72

[Close]

BLAST of CmoCh12G006850 vs. NCBI nr
Match: gi|922327141|ref|XP_013442963.1| (senescence-associated protein, putative [Medicago truncatula])

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1


Query: 80  ELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGS 139
           +LR+K + + HP  G+ QRHVPLG + PLLLVG +  G  +ASSPDSDLEAFSHNP HGS
Sbjct: 25  KLRFKVSRKAHPPYGVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGS 84

Query: 140 FAPLAFQPSAMTNC 154
           FAPLAFQPSAMTNC
Sbjct: 85  FAPLAFQPSAMTNC 98

[Close]

BLAST of CmoCh12G006850 vs. NCBI nr
Match: gi|947015817|gb|KRG68575.1| (hypothetical protein GLYMA_U007400 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGA 104
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG 
Sbjct: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 104

Query: 105 ERPLLLVGNQAM 117
             PLLLV  + M
Sbjct: 105 RGPLLLVVRERM 116

The following BLAST results are available for this feature:

BLAST of CmoCh12G006850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006850 vs. TrEMBL


Match Name	E-value	Identity	Description
I1LXS9_SOYBN	3.6e-41	75.00	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
I1LXQ4_SOYBN	8.1e-41	79.63	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
I1LXT0_SOYBN	8.1e-41	79.63	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0P6CHZ2_9CRUS	1.5e-31	78.02	Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1	[more]
W1PVN2_AMBTC	2.7e-28	60.00	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=...	[more]

BLAST of CmoCh12G006850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|548854219\|gb\|ERN12143.1\|	3.9e-28	60.00	hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda]	[more]
gi\|954297013\|gb\|KRX86393.1\|	4.9e-23	93.33	hypothetical protein T12_13365, partial [Trichinella patagoniensis]	[more]
gi\|966068351\|gb\|KTE89979.1\|	4.9e-23	91.67	hypothetical protein AT727_24830 [Desulfitobacterium hafniense]	[more]
gi\|922327141\|ref\|XP_013442963.1\|	3.2e-22	70.27	senescence-associated protein, putative [Medicago truncatula]	[more]
gi\|947015817\|gb\|KRG68575.1\|	3.0e-20	72.22	hypothetical protein GLYMA_U007400 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006850.1	CmoCh12G006850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	FAMILY NOT NAMED	coord: 45..152 score: 2.4
None	No IPR available	PANTHER	PTHR33047:SF4	SUBFAMILY NOT NAMED	coord: 45..152 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G006850	Cucurbita maxima (Rimu)	cmacmoB771