CmoCh12G004920 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G004920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr12 : 3022777 .. 3023055 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATGCCAAAAGTACAAATTACAAACGAGTTTTGGTTCCCTTCACGGAGGAGCAACTAGCCGCCATTTTCAAAAGCCACGACCGAGATGGTGATGGGAAGCTGTCAAAGGAGGAGTTGAAGCAAGCCTTCAACTATCTTGGCTCGCGCTTTAGCTCCTTTAGAGTCAAAGAAGCCCTACGTGCTGCGGATACGAACGGTGATGGTTTCATCAGCATGGACGAGATGAATAAGCTTATTAAATATACCAAAGGTCGTAAATACACTCTTTGTTAA

mRNA sequence

ATGGGGAATGCCAAAAGTACAAATTACAAACGAGTTTTGGTTCCCTTCACGGAGGAGCAACTAGCCGCCATTTTCAAAAGCCACGACCGAGATGGTGATGGGAAGCTGTCAAAGGAGGAGTTGAAGCAAGCCTTCAACTATCTTGGCTCGCGCTTTAGCTCCTTTAGAGTCAAAGAAGCCCTACGTGCTGCGGATACGAACGGTGATGGTTTCATCAGCATGGACGAGATGAATAAGCTTATTAAATATACCAAAGGTCGTAAATACACTCTTTGTTAA

Coding sequence (CDS)

ATGGGGAATGCCAAAAGTACAAATTACAAACGAGTTTTGGTTCCCTTCACGGAGGAGCAACTAGCCGCCATTTTCAAAAGCCACGACCGAGATGGTGATGGGAAGCTGTCAAAGGAGGAGTTGAAGCAAGCCTTCAACTATCTTGGCTCGCGCTTTAGCTCCTTTAGAGTCAAAGAAGCCCTACGTGCTGCGGATACGAACGGTGATGGTTTCATCAGCATGGACGAGATGAATAAGCTTATTAAATATACCAAAGGTCGTAAATACACTCTTTGTTAA
Homology
[Close]
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-08
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 17  TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
           TEE+L   F+  DRDGDG +S +EL+     LG + ++  V E +R AD +GDG I+ +E
Sbjct: 82  TEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEE 141

Query: 77  MNKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-08
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 17  TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
           TEE+L   F+  DRDGDG +S +EL+     LG + ++  V E +R AD +GDG I+ +E
Sbjct: 82  TEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEE 141

Query: 77  MNKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cam1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 

Query: 18  EEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDEM 77
           EE++   FK  D+DG+G ++ EEL      LG R S   V + +R ADT+GDG I+ +E 
Sbjct: 84  EEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143

Query: 78  NKLI 82
           +++I
Sbjct: 144 SRVI 147

[Close]
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-07
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 17  TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
           TEE+L   FK  DRDG+G +S  EL+     LG + +   V E +R AD +GDG I+ +E
Sbjct: 82  TEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEE 141

Query: 77  MNKLI 82
             +++
Sbjct: 142 FVRMM 146

[Close]
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-07
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 17  TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
           TEE++   FK  D+DG+G +S  EL+     LG + S   V E +R AD +GDG ++ DE
Sbjct: 82  TEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDE 141

Query: 77  MNKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of CmoCh12G004920 vs. TrEMBL
Match: A0A0A0LRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.2e-34
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 1  MGNAKSTNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEA 60
          MGN+KS  YKRVLVPF+EEQLA +FK+HDRDGDG L+KEELKQAF YLGSRF +FRV+EA
Sbjct: 1  MGNSKSKTYKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEA 60

Query: 61 LRAADTNGDGFISMDEMNKLIKYTKGRKYTL 92
          LRAADTNGDG ISMDEM KLIKY K RKYT+
Sbjct: 61 LRAADTNGDGVISMDEMGKLIKYAKTRKYTI 91

[Close]
BLAST of CmoCh12G004920 vs. TrEMBL
Match: A0A0A0LL93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357850 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 17 TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
          +EEQLA IFK HD D D KL+KEEL +AFNYLGSR+++ RVKEA+RA D N DG IS+DE
Sbjct: 9  SEEQLAWIFKKHDIDRDRKLTKEELTRAFNYLGSRWTALRVKEAIRAVDANHDGVISLDE 68

Query: 77 MNKLIKYTKG 87
          M+KLI Y KG
Sbjct: 69 MSKLIVYVKG 78

[Close]
BLAST of CmoCh12G004920 vs. TrEMBL
Match: A0A0A0LP43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 1  MGNAKSTNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEA 60
          MG +    +K      TE ++A +FK+HD+DGDG+L+KEELK AF YLG +F++FRV +A
Sbjct: 1  MGTSNGLIFKCFPASLTEFEVAKVFKNHDKDGDGRLTKEELKSAFKYLGYKFTTFRVHQA 60

Query: 61 LRAADTNGDGFISMDEMNKLIKYTKG 87
          L AAD N D  IS +EM+KLI YT G
Sbjct: 61 LHAADDNCDDVISFEEMSKLIMYTAG 86

[Close]
BLAST of CmoCh12G004920 vs. TrEMBL
Match: A0A0A0L4V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 41/85 (48.24%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 7  TNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADT 66
          ++YKR  VPF+ +QL  IF  HD DGDG+LS+ ELK AF  LGS +S FR +++L+AAD 
Sbjct: 12 SDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRFRARQSLKAADA 71

Query: 67 NGDGFISMDEMNKLIKYTKGRKYTL 92
          +GDG++++DE+++L+ Y    +Y +
Sbjct: 72 DGDGYVTLDELDRLLDYAVRCEYAI 96

[Close]
BLAST of CmoCh12G004920 vs. TrEMBL
Match: A0A061FBR4_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_033849 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.4e-15
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 6   STNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAAD 65
           ST+ KRV V  TE+Q+  IF   D + DG+LSK+ELK AF  LGSR   FR   AL+ AD
Sbjct: 32  STDVKRVGVVVTEDQVRGIFNRFDANKDGRLSKQELKDAFASLGSRMPGFRAWLALQHAD 91

Query: 66  TNGDGFISMDEMNKLIKYTKGRKY 90
            NGDG+IS DE  KL+KYT  R Y
Sbjct: 92  ANGDGYISEDEFEKLVKYTLKRGY 115

[Close]
BLAST of CmoCh12G004920 vs. TAIR10
Match: AT5G42380.1 (AT5G42380.1 calmodulin like 37)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-08
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1 

Query: 20  QLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDEMNK 79
           +L  +F   D + DGK+S EEL+   + LG   SS  V+E ++ +D +GDGFI  +E  K
Sbjct: 49  ELRTVFDYMDANSDGKISGEELQSCVSLLGGALSSREVEEVVKTSDVDGDGFIDFEEFLK 108

Query: 80  LIKYTKG 87
           L++   G
Sbjct: 109 LMEGEDG 115

[Close]
BLAST of CmoCh12G004920 vs. TAIR10
Match: AT1G76650.1 (AT1G76650.1 calmodulin-like 38)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-08
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 20  QLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDEMNK 79
           +L A+F   D + DG++S EEL+++F  LG + S      A+R +DT+GDG +  +E ++
Sbjct: 43  ELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQ 102

Query: 80  LIK 83
           LIK
Sbjct: 103 LIK 105

[Close]
BLAST of CmoCh12G004920 vs. TAIR10
Match: AT1G18530.1 (AT1G18530.1 EF hand calcium-binding protein family)

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-08
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1 

Query: 14  VPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFIS 73
           V    EQL  IFKS DRDG+G +S  EL  A   +G   +   + E ++ ADTNGDG IS
Sbjct: 76  VLINSEQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVIS 135

Query: 74  MDEMNKLI 82
             E   ++
Sbjct: 136 FGEFASIM 143

[Close]
BLAST of CmoCh12G004920 vs. TAIR10
Match: AT3G51920.1 (AT3G51920.1 calmodulin 9)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 22/63 (34.92%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 19  EQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDEMN 78
           ++L  +F+  DRDGDG +S+ EL +    +G + ++   +  +R AD +GDGF+S  E +
Sbjct: 84  DELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFS 143

Query: 79  KLI 82
           K++
Sbjct: 144 KMM 146

[Close]
BLAST of CmoCh12G004920 vs. TAIR10
Match: AT1G76640.1 (AT1G76640.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1 

Query: 16 FTEEQ---LAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFI 75
          F EE+   L A+F   D + DG++S EELK++F  LG + S    + A++ +D +GDG +
Sbjct: 15 FLEEKNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGML 74

Query: 76 SMDEMNKLIK 83
           ++E   LIK
Sbjct: 75 DINEFALLIK 84

[Close]
BLAST of CmoCh12G004920 vs. NCBI nr
Match: gi|700207392|gb|KGN62511.1| (hypothetical protein Csa_2G357340 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.0e-34
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 1  MGNAKSTNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEA 60
          MGN+KS  YKRVLVPF+EEQLA +FK+HDRDGDG L+KEELKQAF YLGSRF +FRV+EA
Sbjct: 1  MGNSKSKTYKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEA 60

Query: 61 LRAADTNGDGFISMDEMNKLIKYTKGRKYTL 92
          LRAADTNGDG ISMDEM KLIKY K RKYT+
Sbjct: 61 LRAADTNGDGVISMDEMGKLIKYAKTRKYTI 91

[Close]
BLAST of CmoCh12G004920 vs. NCBI nr
Match: gi|700207394|gb|KGN62513.1| (hypothetical protein Csa_2G357850 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 17 TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
          +EEQLA IFK HD D D KL+KEEL +AFNYLGSR+++ RVKEA+RA D N DG IS+DE
Sbjct: 9  SEEQLAWIFKKHDIDRDRKLTKEELTRAFNYLGSRWTALRVKEAIRAVDANHDGVISLDE 68

Query: 77 MNKLIKYTKG 87
          M+KLI Y KG
Sbjct: 69 MSKLIVYVKG 78

[Close]
BLAST of CmoCh12G004920 vs. NCBI nr
Match: gi|659087772|ref|XP_008444628.1| (PREDICTED: probable calcium-binding protein CML18 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 17  TEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADTNGDGFISMDE 76
           +EEQLA IFK HD D D KL+KEEL +AF+YLGSR+++ RVK ALRA D NGDG ISMDE
Sbjct: 43  SEEQLAWIFKKHDIDRDRKLTKEELARAFDYLGSRWTARRVKGALRAVDANGDGVISMDE 102

Query: 77  MNKLIKYTKG 87
           M+KLI Y KG
Sbjct: 103 MSKLIVYVKG 112

[Close]
BLAST of CmoCh12G004920 vs. NCBI nr
Match: gi|700207393|gb|KGN62512.1| (hypothetical protein Csa_2G357350 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 1  MGNAKSTNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEA 60
          MG +    +K      TE ++A +FK+HD+DGDG+L+KEELK AF YLG +F++FRV +A
Sbjct: 1  MGTSNGLIFKCFPASLTEFEVAKVFKNHDKDGDGRLTKEELKSAFKYLGYKFTTFRVHQA 60

Query: 61 LRAADTNGDGFISMDEMNKLIKYTKG 87
          L AAD N D  IS +EM+KLI YT G
Sbjct: 61 LHAADDNCDDVISFEEMSKLIMYTAG 86

[Close]
BLAST of CmoCh12G004920 vs. NCBI nr
Match: gi|700200028|gb|KGN55186.1| (hypothetical protein Csa_4G639740 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 41/85 (48.24%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 7  TNYKRVLVPFTEEQLAAIFKSHDRDGDGKLSKEELKQAFNYLGSRFSSFRVKEALRAADT 66
          ++YKR  VPF+ +QL  IF  HD DGDG+LS+ ELK AF  LGS +S FR +++L+AAD 
Sbjct: 12 SDYKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRFRARQSLKAADA 71

Query: 67 NGDGFISMDEMNKLIKYTKGRKYTL 92
          +GDG++++DE+++L+ Y    +Y +
Sbjct: 72 DGDGYVTLDELDRLLDYAVRCEYAI 96

The following BLAST results are available for this feature:
BLAST of CmoCh12G004920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CALM_PLAFA9.7e-0841.54Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF79.7e-0841.54Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2[more]
CALM_SCHPO2.8e-0740.63Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cam1 PE=1 S... [more]
CALM_STYLE3.7e-0740.00Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_PHYPO3.7e-0740.00Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
BLAST of CmoCh12G004920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB6_CUCSA4.2e-3480.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1[more]
A0A0A0LL93_CUCSA1.2e-1768.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357850 PE=4 SV=1[more]
A0A0A0LP43_CUCSA2.1e-1753.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357350 PE=4 SV=1[more]
A0A0A0L4V0_CUCSA1.8e-1648.24Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1[more]
A0A061FBR4_THECC4.4e-1555.95Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_03384... [more]
BLAST of CmoCh12G004920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42380.14.6e-0838.81 calmodulin like 37[more]
AT1G76650.14.6e-0839.68 calmodulin-like 38[more]
AT1G18530.16.0e-0842.65 EF hand calcium-binding protein family[more]
AT3G51920.12.3e-0734.92 calmodulin 9[more]
AT1G76640.13.0e-0738.57 Calcium-binding EF-hand family protein[more]
BLAST of CmoCh12G004920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207392|gb|KGN62511.1|6.0e-3480.22hypothetical protein Csa_2G357340 [Cucumis sativus][more]
gi|700207394|gb|KGN62513.1|1.8e-1768.57hypothetical protein Csa_2G357850 [Cucumis sativus][more]
gi|659087772|ref|XP_008444628.1|3.0e-1770.00PREDICTED: probable calcium-binding protein CML18 [Cucumis melo][more]
gi|700207393|gb|KGN62512.1|3.0e-1753.49hypothetical protein Csa_2G357350 [Cucumis sativus][more]
gi|700200028|gb|KGN55186.1|2.5e-1648.24hypothetical protein Csa_4G639740 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004920.1CmoCh12G004920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 18..81
score: 1.0
IPR002048EF-hand domainSMARTSM00054efh_1coord: 20..48
score: 0.0028coord: 56..84
score: 0
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 52..87
score: 12.226coord: 16..51
score: 15
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 18..82
score: 5.6
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 13..82
score: 4.28
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 65..77
score: -coord: 29..41
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 13..86
score: 3.1
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 13..86
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G004920Cucurbita moschata (Rifu)cmocmoB004
CmoCh12G004920Cucurbita moschata (Rifu)cmocmoB141
CmoCh12G004920Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G004920Cucumber (Gy14) v1cgycmoB0641
CmoCh12G004920Cucurbita maxima (Rimu)cmacmoB032
CmoCh12G004920Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G004920Cucurbita maxima (Rimu)cmacmoB453
CmoCh12G004920Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G004920Wild cucumber (PI 183967)cmocpiB160
CmoCh12G004920Wild cucumber (PI 183967)cmocpiB172
CmoCh12G004920Cucumber (Chinese Long) v2cmocuB158
CmoCh12G004920Cucumber (Chinese Long) v2cmocuB169
CmoCh12G004920Melon (DHL92) v3.5.1cmomeB146
CmoCh12G004920Melon (DHL92) v3.5.1cmomeB171
CmoCh12G004920Watermelon (Charleston Gray)cmowcgB149
CmoCh12G004920Watermelon (Charleston Gray)cmowcgB161
CmoCh12G004920Watermelon (97103) v1cmowmB134
CmoCh12G004920Watermelon (97103) v1cmowmB145
CmoCh12G004920Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G004920Cucurbita pepo (Zucchini)cmocpeB166
CmoCh12G004920Cucurbita pepo (Zucchini)cmocpeB172
CmoCh12G004920Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G004920Bottle gourd (USVL1VR-Ls)cmolsiB167
CmoCh12G004920Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G004920Cucumber (Gy14) v2cgybcmoB171
CmoCh12G004920Cucumber (Gy14) v2cgybcmoB449
CmoCh12G004920Melon (DHL92) v3.6.1cmomedB161
CmoCh12G004920Melon (DHL92) v3.6.1cmomedB188
CmoCh12G004920Silver-seed gourdcarcmoB0108
CmoCh12G004920Silver-seed gourdcarcmoB0257
CmoCh12G004920Silver-seed gourdcarcmoB1042
CmoCh12G004920Cucumber (Chinese Long) v3cmocucB0186
CmoCh12G004920Cucumber (Chinese Long) v3cmocucB0200
CmoCh12G004920Watermelon (97103) v2cmowmbB178
CmoCh12G004920Watermelon (97103) v2cmowmbB166
CmoCh12G004920Wax gourdcmowgoB0190
CmoCh12G004920Wax gourdcmowgoB0222