CmoCh12G004840 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G004840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr12 : 2978072 .. 2978473 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCATTCAAGAAATACTCCAAAGGCCTCTATCTGAGAAGGAAGCAGACTGTGTGCTGAAGCTTCGTGATACCAACAAAGATGGCGTTCTTGAGAAGAAGGAGCTGATGAATGACTTGAGGCCCTCCAAACTACAGCTCACTCGGGAGGAGATCAAAGAGATTTTCCTAGAACACGACATCGATGGAGATGGTTGTCTTAGTGTCGGTGAGGTAACTAAGGCCTTCAATTTCATGGGTTCTTCGCTCTCGTTTCATAAAGCTCGTCATGGCTTGGCTCTTGCTGATTGTGATGGCGATGGCGTTATTAGCGAGGAGGAACTTGATAAACTCGTTGATTATTTCGAGAAAACCAACAAGAAGTGTTTAAAGAGAGTGGTTCCAAAAAGAAGTGTTTAA

mRNA sequence

ATGGAAAGCATTCAAGAAATACTCCAAAGGCCTCTATCTGAGAAGGAAGCAGACTGTGTGCTGAAGCTTCGTGATACCAACAAAGATGGCGTTCTTGAGAAGAAGGAGCTGATGAATGACTTGAGGCCCTCCAAACTACAGCTCACTCGGGAGGAGATCAAAGAGATTTTCCTAGAACACGACATCGATGGAGATGGTTGTCTTAGTGTCGGTGAGGTAACTAAGGCCTTCAATTTCATGGGTTCTTCGCTCTCGTTTCATAAAGCTCGTCATGGCTTGGCTCTTGCTGATTGTGATGGCGATGGCGTTATTAGCGAGGAGGAACTTGATAAACTCGTTGATTATTTCGAGAAAACCAACAAGAAGTGTTTAAAGAGAGTGGTTCCAAAAAGAAGTGTTTAA

Coding sequence (CDS)

ATGGAAAGCATTCAAGAAATACTCCAAAGGCCTCTATCTGAGAAGGAAGCAGACTGTGTGCTGAAGCTTCGTGATACCAACAAAGATGGCGTTCTTGAGAAGAAGGAGCTGATGAATGACTTGAGGCCCTCCAAACTACAGCTCACTCGGGAGGAGATCAAAGAGATTTTCCTAGAACACGACATCGATGGAGATGGTTGTCTTAGTGTCGGTGAGGTAACTAAGGCCTTCAATTTCATGGGTTCTTCGCTCTCGTTTCATAAAGCTCGTCATGGCTTGGCTCTTGCTGATTGTGATGGCGATGGCGTTATTAGCGAGGAGGAACTTGATAAACTCGTTGATTATTTCGAGAAAACCAACAAGAAGTGTTTAAAGAGAGTGGTTCCAAAAAGAAGTGTTTAA
Homology
[Close]
BLAST of CmoCh12G004840 vs. TrEMBL
Match: A0A0A0LP46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358880 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 1 

Query: 2   ESIQEILQRPLSEKEADCVLKLRDTNKDGVLEKKELMNDL-----RPSK----LQLTREE 61
           +S+   LQ+PLSEKEA+ +L++RD N DGVL+K+ELM DL     +PS     ++LTREE
Sbjct: 4   KSLFVALQKPLSEKEANLLLEMRDANGDGVLDKQELMADLTHTNKKPSTSLQDMKLTREE 63

Query: 62  IKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGVISEEELDKL 120
           IKEIF+  DIDGDG LS  EV +AF  MGS     KA + +A AD DGDG ISE EL+KL
Sbjct: 64  IKEIFVGFDIDGDGFLSKNEVIQAFGMMGSCSPIMKAHYAMACADEDGDGRISEPELNKL 123

[Close]
BLAST of CmoCh12G004840 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 44  SKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGV 103
           SK   +REE+KEIF EHDIDGDG LS+ E+ KA  F+G S+ F+KA +G+A  D +GDG+
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 104 ISEEELDKLVDYFEKTNKK 123
           ISE+ELDKL+DY E+  K+
Sbjct: 67  ISEDELDKLIDYAERFQKR 85

[Close]
BLAST of CmoCh12G004840 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 44  SKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGV 103
           ++LQL+RE+IKEIF EHDIDGDG LS+ E+ KAF   GS L F+KA +G+A AD +GDG 
Sbjct: 6   TRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGF 65

Query: 104 ISEEELDKLVDYFEKTNKK 123
           I EEELDKLVDY +K   K
Sbjct: 66  IEEEELDKLVDYAQKFQHK 84

[Close]
BLAST of CmoCh12G004840 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.7e-16
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 40  DLRPSKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCD 99
           D++ S +Q +RE+IKEIF  HD D DG L++ EVTKAF F+G+ L  +KA HG+  AD +
Sbjct: 93  DIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADAN 152

Query: 100 GDGVISEEELDKLVDYFEK 119
            DG+IS++EL+KLVDY  K
Sbjct: 153 KDGLISKDELEKLVDYAYK 171

[Close]
BLAST of CmoCh12G004840 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 31  VLEKKELMNDLRPSKLQ----LTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSF 90
           +  KK+L++  + S  Q    L+RE+IKEIF  HD + DG LS+ E+TKAF+ MGS + F
Sbjct: 75  ITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMGSIVPF 134

Query: 91  HKARHGLALADCDGDGVISEEELDKLVDYFEKTNKK 123
            KAR+ +A AD D DG++SE ELDKL+DY  K  KK
Sbjct: 135 CKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKK 170

[Close]
BLAST of CmoCh12G004840 vs. NCBI nr
Match: gi|659089535|ref|XP_008445562.1| (PREDICTED: probable calcium-binding protein CML36 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 1 

Query: 8   LQRPLSEKEADCVLKLRDTNKDGVLEKKELMNDL-----RPS----KLQLTREEIKEIFL 67
           LQ+PLSEKEA+ V K+RD N DG+L+K+ELM DL     +PS     ++LTREEIKEIF+
Sbjct: 10  LQKPLSEKEANLVFKMRDANGDGILDKQELMTDLTHANKKPSTNLPNMKLTREEIKEIFV 69

Query: 68  EHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGVISEEELDKLVDYFEK 123
             DIDGDG LS  EV +AF  MGS     K  + +A AD DGDG+ISE EL+KL+DY ++
Sbjct: 70  GFDIDGDGFLSKNEVMQAFGMMGSYSPLLKTHYAMACADEDGDGLISECELNKLIDYVQR 129

[Close]
BLAST of CmoCh12G004840 vs. NCBI nr
Match: gi|449470196|ref|XP_004152804.1| (PREDICTED: probable calcium-binding protein CML36 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 1 

Query: 2   ESIQEILQRPLSEKEADCVLKLRDTNKDGVLEKKELMNDL-----RPSK----LQLTREE 61
           +S+   LQ+PLSEKEA+ +L++RD N DGVL+K+ELM DL     +PS     ++LTREE
Sbjct: 4   KSLFVALQKPLSEKEANLLLEMRDANGDGVLDKQELMADLTHTNKKPSTSLQDMKLTREE 63

Query: 62  IKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGVISEEELDKL 120
           IKEIF+  DIDGDG LS  EV +AF  MGS     KA + +A AD DGDG ISE EL+KL
Sbjct: 64  IKEIFVGFDIDGDGFLSKNEVIQAFGMMGSCSPIMKAHYAMACADEDGDGRISEPELNKL 123

[Close]
BLAST of CmoCh12G004840 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 1 

Query: 21  LKLRDTNKDGVLEKKELMN----DLRPSKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKA 80
           L L D + DG + ++EL       ++ ++LQL+RE+IKEIF EHDIDGDG LS+ E+ KA
Sbjct: 60  LFLADDDGDGFISEQELDKVVDYAIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKA 119

Query: 81  FNFMGSSLSFHKARHGLALADCDGDGVISEEELDKLVDYFEKTNKK 123
           F   GS L F+KA +G+A AD +GDG I EEELDKLVDY +K   K
Sbjct: 120 FGCFGSILPFYKAHYGMAHADENGDGFIEEEELDKLVDYAQKFQHK 165

[Close]
BLAST of CmoCh12G004840 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 44  SKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGV 103
           SK   +REE+KEIF EHDIDGDG LS+ E+ KA  F+G S+ F+KA +G+A  D +GDG+
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 104 ISEEELDKLVDYFEKTNKK 123
           ISE+ELDKL+DY E+  K+
Sbjct: 67  ISEDELDKLIDYAERFQKR 85

[Close]
BLAST of CmoCh12G004840 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 44  SKLQLTREEIKEIFLEHDIDGDGCLSVGEVTKAFNFMGSSLSFHKARHGLALADCDGDGV 103
           ++LQL+RE+IKEIF EHDIDGDG LS+ E+ KAF   GS L F+KA +G+A AD +GDG 
Sbjct: 6   TRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGF 65

Query: 104 ISEEELDKLVDYFEKTNKK 123
           I EEELDKLVDY +K   K
Sbjct: 66  IEEEELDKLVDYAQKFQHK 84

The following BLAST results are available for this feature:
BLAST of CmoCh12G004840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP46_CUCSA1.8e-2555.12Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358880 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA1.2e-1858.23Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA1.6e-1863.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA9.7e-1654.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA1.7e-1551.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
BLAST of CmoCh12G004840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089535|ref|XP_008445562.1|3.9e-2655.65PREDICTED: probable calcium-binding protein CML36 [Cucumis melo][more]
gi|449470196|ref|XP_004152804.1|2.5e-2555.12PREDICTED: probable calcium-binding protein CML36 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|1.2e-1953.77PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700207406|gb|KGN62525.1|1.8e-1858.23hypothetical protein Csa_2G359940 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|2.3e-1863.29hypothetical protein Csa_2G358870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004840.1CmoCh12G004840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 51..111
score: 5.
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 2..41
score: 1.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 88..116
score: 11.0coord: 52..80
score: 2.6coord: 16..44
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 84..119
score: 8.432coord: 12..47
score: 9.436coord: 48..83
score: 13
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 13..63
score: 7.9E-10coord: 64..118
score: 2.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 6..117
score: 3.85
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 97..109
score: -coord: 61..73
score: -coord: 25..37
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 33..115
score: 2.8
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 33..115
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G004840Cla022565Watermelon (97103) v1cmowmB134
CmoCh12G004840ClCG08G015840Watermelon (Charleston Gray)cmowcgB161
CmoCh12G004840Lsi08G014610Bottle gourd (USVL1VR-Ls)cmolsiB175
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G004840Silver-seed gourdcarcmoB0108
CmoCh12G004840Silver-seed gourdcarcmoB0257
CmoCh12G004840Silver-seed gourdcarcmoB1042
CmoCh12G004840Cucumber (Chinese Long) v3cmocucB0186
CmoCh12G004840Cucumber (Chinese Long) v3cmocucB0200
CmoCh12G004840Watermelon (97103) v2cmowmbB178
CmoCh12G004840Watermelon (97103) v2cmowmbB166
CmoCh12G004840Wax gourdcmowgoB0190
CmoCh12G004840Wax gourdcmowgoB0222
CmoCh12G004840Cucurbita moschata (Rifu)cmocmoB004
CmoCh12G004840Cucurbita moschata (Rifu)cmocmoB141
CmoCh12G004840Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G004840Cucumber (Gy14) v1cgycmoB0641
CmoCh12G004840Cucurbita maxima (Rimu)cmacmoB032
CmoCh12G004840Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G004840Cucurbita maxima (Rimu)cmacmoB453
CmoCh12G004840Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G004840Wild cucumber (PI 183967)cmocpiB160
CmoCh12G004840Wild cucumber (PI 183967)cmocpiB172
CmoCh12G004840Cucumber (Chinese Long) v2cmocuB158
CmoCh12G004840Cucumber (Chinese Long) v2cmocuB169
CmoCh12G004840Melon (DHL92) v3.5.1cmomeB146
CmoCh12G004840Melon (DHL92) v3.5.1cmomeB171
CmoCh12G004840Watermelon (Charleston Gray)cmowcgB149
CmoCh12G004840Watermelon (97103) v1cmowmB145
CmoCh12G004840Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G004840Cucurbita pepo (Zucchini)cmocpeB166
CmoCh12G004840Cucurbita pepo (Zucchini)cmocpeB172
CmoCh12G004840Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G004840Bottle gourd (USVL1VR-Ls)cmolsiB167
CmoCh12G004840Cucumber (Gy14) v2cgybcmoB171
CmoCh12G004840Cucumber (Gy14) v2cgybcmoB449
CmoCh12G004840Melon (DHL92) v3.6.1cmomedB161
CmoCh12G004840Melon (DHL92) v3.6.1cmomedB188