CmoCh12G004740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G004740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr12 : 2894406 .. 2894894 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTATGACAAAAACGAGAAATTTTATCCGTGCTATTTGCTCAGTAAAGAAGAGCTACAATTCTTTCTCCGTGATGTTCGAAGATCAACTCAACTCAACAATCGAAAAATTTTATCTATGATCCCAAAGACAAACGACAATGTTGCACACATGTTTAGCTCAAATACTCATATAAACTCAAAGATAGAAATACAAGACAAAGCTACAAAATCCCCGGCAAAAGTTTTTAGTGAAAAGACATCTGATGAGCCACTTAGTCGAGAGAAAATAAAGAAAATTTTCAAATATTACGACAGCGACAAAGATGGTTTTCTCAACAAAAGAGAGATAACAAAAGCTTTTAGTTTTCTAGGCTCAATTAATCTATACTACAGGGCTCAATACGCTTTGGATTTTGCTGATGCTAATAATGATGGTCTTATCAGTGAAGATGAGCTTGAAAAACTCATAGATTATGCCTGTAAAATCATCCAGAAAAAATGA

mRNA sequence

ATGAAGAAGTATGACAAAAACGAGAAATTTTATCCGTGCTATTTGCTCAGTAAAGAAGAGCTACAATTCTTTCTCCGTGATGTTCGAAGATCAACTCAACTCAACAATCGAAAAATTTTATCTATGATCCCAAAGACAAACGACAATGTTGCACACATGTTTAGCTCAAATACTCATATAAACTCAAAGATAGAAATACAAGACAAAGCTACAAAATCCCCGGCAAAAGTTTTTAGTGAAAAGACATCTGATGAGCCACTTAGTCGAGAGAAAATAAAGAAAATTTTCAAATATTACGACAGCGACAAAGATGGCTCAATTAATCTATACTACAGGGCTCAATACGCTTTGGATTTTGCTGATGCTAATAATGATGGTCTTATCAGTGAAGATGAGCTTGAAAAACTCATAGATTATGCCTGTAAAATCATCCAGAAAAAATGA

Coding sequence (CDS)

ATGAAGAAGTATGACAAAAACGAGAAATTTTATCCGTGCTATTTGCTCAGTAAAGAAGAGCTACAATTCTTTCTCCGTGATGTTCGAAGATCAACTCAACTCAACAATCGAAAAATTTTATCTATGATCCCAAAGACAAACGACAATGTTGCACACATGTTTAGCTCAAATACTCATATAAACTCAAAGATAGAAATACAAGACAAAGCTACAAAATCCCCGGCAAAAGTTTTTAGTGAAAAGACATCTGATGAGCCACTTAGTCGAGAGAAAATAAAGAAAATTTTCAAATATTACGACAGCGACAAAGATGGCTCAATTAATCTATACTACAGGGCTCAATACGCTTTGGATTTTGCTGATGCTAATAATGATGGTCTTATCAGTGAAGATGAGCTTGAAAAACTCATAGATTATGCCTGTAAAATCATCCAGAAAAAATGA
Homology
[Close]
BLAST of CmoCh12G004740 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-26
Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLNNRKILSM--IPKTNDNVAHMFSSNT 60
           +KKYD+N       +L+KEELQ FLRD R STQLNN + +S   +PKTN+N+A   SSNT
Sbjct: 18  IKKYDRNGDG----VLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKVSSNT 77

Query: 61  HINSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL--------- 120
            I  K ++ DKA  S       K S+ PLSRE+IK+IFKY+DS+KDG +++         
Sbjct: 78  CITPKKQLLDKAQGS------SKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSS 137

Query: 121 ------YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                 + +A+YA+ +AD + DGL+SE EL+KLIDYA KII+KK
Sbjct: 138 MGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh12G004740 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.2e-20
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 27  DVRRSTQLNNRKILSMIPKTNDNVAHMFSSNTHINSKIEIQDKATKSPAKVFSEKTSDEP 86
           DVR STQ+ NR+ +  I K +D VAH   S  HI        K  KS  +V   K+S+  
Sbjct: 36  DVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMS 95

Query: 87  LSREKIKKIFKYYDSDKDGSINL---------------YYRAQYALDFADANNDGLISED 146
           LSRE+IK+IF+Y+D++ DG +N                +Y+A Y + +ADAN DGLISE 
Sbjct: 96  LSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEA 155

Query: 147 ELEKLIDYACKIIQKK 148
           EL+KLIDYA KII+KK
Sbjct: 156 ELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh12G004740 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLN-NRKILSMIPKTNDNVAHMFSSNTH 60
           MKKY++N +           L  F  + R STQ+N NR++ +   K ND+VAH  SSN  
Sbjct: 46  MKKYEQNGEGVI--------LSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 105

Query: 61  INSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL---------- 120
           + S  +I+ KA     +V+  K S+   SRE+IK+IF+YYDSD+DG +N+          
Sbjct: 106 LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 165

Query: 121 -----YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                + +A + + +AD N DGLI EDEL+KLI+YA K ++KK
Sbjct: 166 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh12G004740 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLNNRKILS---MIPKTNDNVAHMFSSN 60
           MKK++ N++  P        L+ F      ST++NN++ ++   ++  +N  VAH  +SN
Sbjct: 19  MKKHENNDEGVP--------LKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 78

Query: 61  TH-INSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL------- 120
            + I SK     KA  +   V   K S+   SRE+IK+IF+Y+DSD DG +NL       
Sbjct: 79  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 138

Query: 121 --------YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                    Y+A + + +ADAN DGLIS+DELEKL+DYA K   K+
Sbjct: 139 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh12G004740 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLNNRKILSM--IPKTNDNVAHMFSSNT 60
           +KKYD+N       +L+KEELQ FLRD R STQLNN + +S   +PKTN+N+A   SSNT
Sbjct: 18  IKKYDRNGDG----VLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKVSSNT 77

Query: 61  HINSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL--------- 120
            I  K ++ DKA  S       K S+ PLSRE+IK+IFKY+DS+KDG +++         
Sbjct: 78  CITPKKQLLDKAQGS------SKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSS 137

Query: 121 ------YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                 + +A+YA+ +AD + DGL+SE EL+KLIDYA KII+KK
Sbjct: 138 MGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh12G004740 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-20
Identity = 74/164 (45.12%), Postives = 101/164 (61.59%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLNNRKILSM--IPKTNDNVAHMFSSNT 60
           +KKYD+N       +L+KEELQ FL D R    L N + +S   IPKTN+N+    SSNT
Sbjct: 18  IKKYDRNGDG----VLTKEELQSFLHDAR----LKNIRFVSSSTIPKTNENLDQKVSSNT 77

Query: 61  HINSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL--------- 120
            I  K ++ DKA  S       + S+ PLSRE+IK+IFKY+DS+KDG +++         
Sbjct: 78  RIKPKKQLLDKAQDSL------RQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFGS 137

Query: 121 ------YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                 + +A++A+ +AD + DGLISE EL KLIDYA KII+KK
Sbjct: 138 LGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

[Close]
BLAST of CmoCh12G004740 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 27  DVRRSTQLNNRKILSMIPKTNDNVAHMFSSNTHINSKIEIQDKATKSPAKVFSEKTSDEP 86
           DVR STQ+ NR+ +  I K +D VAH   S  HI        K  KS  +V   K+S+  
Sbjct: 36  DVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMS 95

Query: 87  LSREKIKKIFKYYDSDKDGSINL---------------YYRAQYALDFADANNDGLISED 146
           LSRE+IK+IF+Y+D++ DG +N                +Y+A Y + +ADAN DGLISE 
Sbjct: 96  LSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEA 155

Query: 147 ELEKLIDYACKIIQKK 148
           EL+KLIDYA KII+KK
Sbjct: 156 ELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh12G004740 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLN-NRKILSMIPKTNDNVAHMFSSNTH 60
           MKKY++N +           L  F  + R STQ+N NR++ +   K ND+VAH  SSN  
Sbjct: 46  MKKYEQNGEGVI--------LSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 105

Query: 61  INSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL---------- 120
           + S  +I+ KA     +V+  K S+   SRE+IK+IF+YYDSD+DG +N+          
Sbjct: 106 LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 165

Query: 121 -----YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                + +A + + +AD N DGLI EDEL+KLI+YA K ++KK
Sbjct: 166 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh12G004740 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-14
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1 

Query: 1   MKKYDKNEKFYPCYLLSKEELQFFLRDVRRSTQLNNRKILS---MIPKTNDNVAHMFSSN 60
           MKK++ N++  P        L+ F      ST++NN++ ++   ++  +N  VAH  +SN
Sbjct: 19  MKKHENNDEGVP--------LKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 78

Query: 61  TH-INSKIEIQDKATKSPAKVFSEKTSDEPLSREKIKKIFKYYDSDKDGSINL------- 120
            + I SK     KA  +   V   K S+   SRE+IK+IF+Y+DSD DG +NL       
Sbjct: 79  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 138

Query: 121 --------YYRAQYALDFADANNDGLISEDELEKLIDYACKIIQKK 148
                    Y+A + + +ADAN DGLIS+DELEKL+DYA K   K+
Sbjct: 139 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

The following BLAST results are available for this feature:
BLAST of CmoCh12G004740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRC8_CUCSA8.8e-2648.78Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA7.2e-2045.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA3.0e-1839.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA2.6e-1437.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
BLAST of CmoCh12G004740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470190|ref|XP_004152801.1|1.3e-2548.78PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|6.0e-2045.12PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
gi|700194510|gb|KGN49687.1|1.0e-1945.59hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|4.3e-1839.88hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|3.8e-1437.35hypothetical protein Csa_5G068170 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004740.1CmoCh12G004740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 117..136
score: 4.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 87..122
score: 8.46coord: 123..143
score: 6
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 4..34
score: 2.4E-5coord: 77..138
score: 5.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 15..137
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G004740Lsi08G014600Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G004740Cp4.1LG07g05350Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G004740MELO3C010876.2Melon (DHL92) v3.6.1cmomedB161
CmoCh12G004740Cla97C08G159380Watermelon (97103) v2cmowmbB178
CmoCh12G004740Bhi04G000303Wax gourdcmowgoB0190
CmoCh12G004740CsGy2G019160Cucumber (Gy14) v2cgybcmoB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G004740Cucurbita moschata (Rifu)cmocmoB004
CmoCh12G004740Cucurbita moschata (Rifu)cmocmoB141
CmoCh12G004740Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G004740Cucumber (Gy14) v1cgycmoB0641
CmoCh12G004740Cucurbita maxima (Rimu)cmacmoB032
CmoCh12G004740Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G004740Cucurbita maxima (Rimu)cmacmoB453
CmoCh12G004740Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G004740Wild cucumber (PI 183967)cmocpiB160
CmoCh12G004740Wild cucumber (PI 183967)cmocpiB172
CmoCh12G004740Cucumber (Chinese Long) v2cmocuB158
CmoCh12G004740Cucumber (Chinese Long) v2cmocuB169
CmoCh12G004740Melon (DHL92) v3.5.1cmomeB146
CmoCh12G004740Melon (DHL92) v3.5.1cmomeB171
CmoCh12G004740Watermelon (Charleston Gray)cmowcgB149
CmoCh12G004740Watermelon (Charleston Gray)cmowcgB161
CmoCh12G004740Watermelon (97103) v1cmowmB134
CmoCh12G004740Watermelon (97103) v1cmowmB145
CmoCh12G004740Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G004740Cucurbita pepo (Zucchini)cmocpeB166
CmoCh12G004740Cucurbita pepo (Zucchini)cmocpeB172
CmoCh12G004740Bottle gourd (USVL1VR-Ls)cmolsiB167
CmoCh12G004740Cucumber (Gy14) v2cgybcmoB449
CmoCh12G004740Melon (DHL92) v3.6.1cmomedB188
CmoCh12G004740Silver-seed gourdcarcmoB0145
CmoCh12G004740Silver-seed gourdcarcmoB0257
CmoCh12G004740Silver-seed gourdcarcmoB1042
CmoCh12G004740Cucumber (Chinese Long) v3cmocucB0186
CmoCh12G004740Cucumber (Chinese Long) v3cmocucB0200
CmoCh12G004740Watermelon (97103) v2cmowmbB166
CmoCh12G004740Wax gourdcmowgoB0222