CmoCh12G002170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G002170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr12 : 1429725 .. 1430369 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGTTTGTTTTATAAACGACGACAATTAGTGTCTTATTCGAATTGGTTGGTTACTGAAAACTAATGCTGGATCATCTTCCATGCTTCTCTGCTGCTGCTTGCTATTTCTACAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGAGCTGCTGCCTGCCTGGTGTGTCTTATGGCCAGCTCTGCTACAATTTTGGAGGAAAAGCTCTCTACCTCTACTGGTCTTTTTATTTATCAGCTTCGTGTTTAGTTTAGAGGTTGTCTTTGTGTTTTTTTTTTTTTTTGAATTTTTATTCGATAATATTTGAAAATTTGAACATATAAAGCTACTAACTCAATTCAAAAGCCCTATTTTGTTGTTCTTCCCCACTTTACAAGTTTTTTTTCCTCAAAATAGTGAAAATCTTTGCGTGTTAGAAACGAAATGGAATAGTGGCTG

mRNA sequence

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGAGCTGCTGCCTGCCTGGTGTGTCTTATGGCCAGCTCTGCTACAATTTTGGAGGAAAAGCTCTCTACCTCTACTGGTCTTTTTATTTATCAGCTTCGTGTTTAGTTTAGAGGTTGTCTTTGTGTTTTTTTTTTTTTTTGAATTTTTATTCGATAATATTTGAAAATTTGAACATATAAAGCTACTAACTCAATTCAAAAGCCCTATTTTGTTGTTCTTCCCCACTTTACAAGTTTTTTTTCCTCAAAATAGTGAAAATCTTTGCGTGTTAGAAACGAAATGGAATAGTGGCTG

Coding sequence (CDS)

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGA

Homology

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BLAST of CmoCh12G002170 vs. TrEMBL
Match: A0A0A0LP79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375250 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-21
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 411 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 469

[Close]

BLAST of CmoCh12G002170 vs. TrEMBL
Match: F6H2Y4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03800 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           ++GEAE+EYW  LR +QEKH R FKGNRGRGGK NRGGK GR R  D   GRPNK QKV
Sbjct: 415 VTGEAEREYWSLLRGNQEKH-RGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKV 472

[Close]

BLAST of CmoCh12G002170 vs. TrEMBL
Match: A5AMP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007260 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           ++GEAE+EYW  LR +QEKH R FKGNRGRGGK NRGGK GR R  D   GRPNK QKV
Sbjct: 415 VTGEAEREYWSLLRGNQEKH-RGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKV 472

[Close]

BLAST of CmoCh12G002170 vs. TrEMBL
Match: A0A0V0I9N8_SOLCH (Putative la protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQK 80
           ++G+AE+EYW   R+SQ++  RDFKGNRGRGG+FNRGGKH R RG D   GRPNK QK
Sbjct: 358 VTGDAEREYWTMFRNSQQEKRRDFKGNRGRGGRFNRGGKHSRGRGNDFG-GRPNKFQK 414

[Close]

BLAST of CmoCh12G002170 vs. TrEMBL
Match: M1AQQ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010836 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQK 80
           ++G+AE+EYW   R+SQ++  RDFKGNRGRGG+FNRGGKH R RG D   GRPNK QK
Sbjct: 412 VTGDAEREYWTMFRNSQQEKRRDFKGNRGRGGRFNRGGKHSRGRGNDFG-GRPNKFQK 468

[Close]

BLAST of CmoCh12G002170 vs. NCBI nr
Match: gi|449465127|ref|XP_004150280.1| (PREDICTED: la protein 1 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-21
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 411 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 469

[Close]

BLAST of CmoCh12G002170 vs. NCBI nr
Match: gi|659088541|ref|XP_008445036.1| (PREDICTED: la protein 1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-21
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 413 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 471

[Close]

BLAST of CmoCh12G002170 vs. NCBI nr
Match: gi|147819226|emb|CAN66913.1| (hypothetical protein VITISV_007260 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           ++GEAE+EYW  LR +QEKH R FKGNRGRGGK NRGGK GR R  D   GRPNK QKV
Sbjct: 415 VTGEAEREYWSLLRGNQEKH-RGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKV 472

[Close]

BLAST of CmoCh12G002170 vs. NCBI nr
Match: gi|296081884|emb|CBI20889.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           ++GEAE+EYW  LR +QEKH R FKGNRGRGGK NRGGK GR R  D   GRPNK QKV
Sbjct: 331 VTGEAEREYWSLLRGNQEKH-RGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKV 388

[Close]

BLAST of CmoCh12G002170 vs. NCBI nr
Match: gi|225430017|ref|XP_002284157.1| (PREDICTED: la protein 1 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           ++GEAE+EYW  LR +QEKH R FKGNRGRGGK NRGGK GR R  D   GRPNK QKV
Sbjct: 415 VTGEAEREYWSLLRGNQEKH-RGFKGNRGRGGKQNRGGKFGRPRDNDYATGRPNKTQKV 472

The following BLAST results are available for this feature:

BLAST of CmoCh12G002170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G002170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP79_CUCSA	4.6e-21	89.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375250 PE=4 SV=1	[more]
F6H2Y4_VITVI	1.6e-10	69.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03800 PE=4 SV=...	[more]
A5AMP9_VITVI	1.6e-10	69.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007260 PE=4 SV=1	[more]
A0A0V0I9N8_SOLCH	1.6e-10	65.52	Putative la protein-like OS=Solanum chacoense PE=4 SV=1	[more]
M1AQQ0_SOLTU	1.6e-10	65.52	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010836 PE=4 SV=1	[more]

BLAST of CmoCh12G002170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G002170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465127\|ref\|XP_004150280.1\|	6.6e-21	89.83	PREDICTED: la protein 1 [Cucumis sativus]	[more]
gi\|659088541\|ref\|XP_008445036.1\|	6.6e-21	89.83	PREDICTED: la protein 1 [Cucumis melo]	[more]
gi\|147819226\|emb\|CAN66913.1\|	2.4e-10	69.49	hypothetical protein VITISV_007260 [Vitis vinifera]	[more]
gi\|296081884\|emb\|CBI20889.3\|	2.4e-10	69.49	unnamed protein product [Vitis vinifera]	[more]
gi\|225430017\|ref\|XP_002284157.1\|	2.4e-10	69.49	PREDICTED: la protein 1 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007275	multicellular organism development
biological_process	GO:1902582	single-organism intracellular transport
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0071702	organic substance transport
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0034470	ncRNA processing
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0048856	anatomical structure development
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0031981	nuclear lumen
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G002170.1	CmoCh12G002170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G002170	Cucsa.161440	Cucumber (Gy14) v1	cgycmoB0448
CmoCh12G002170	CmaCh05G006040	Cucurbita maxima (Rimu)	cmacmoB767
CmoCh12G002170	Cla022225	Watermelon (97103) v1	cmowmB134
CmoCh12G002170	Csa2G375250	Cucumber (Chinese Long) v2	cmocuB149
CmoCh12G002170	MELO3C011157	Melon (DHL92) v3.5.1	cmomeB151
CmoCh12G002170	CSPI02G22430	Wild cucumber (PI 183967)	cmocpiB150
CmoCh12G002170	Cp4.1LG11g05330	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G002170	Cp4.1LG07g02290	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G002170	MELO3C011157.2	Melon (DHL92) v3.6.1	cmomedB167
CmoCh12G002170	CsaV3_2G031070	Cucumber (Chinese Long) v3	cmocucB0176
CmoCh12G002170	Cla97C08G155550	Watermelon (97103) v2	cmowmbB178
CmoCh12G002170	Bhi04G000680	Wax gourd	cmowgoB0205
CmoCh12G002170	CsGy2G022210	Cucumber (Gy14) v2	cgybcmoB160
CmoCh12G002170	Carg03855	Silver-seed gourd	carcmoB1310
CmoCh12G002170	Carg08289	Silver-seed gourd	carcmoB0078

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G002170	CmoCh05G006300	Cucurbita moschata (Rifu)	cmocmoB151

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G002170	Cucumber (Gy14) v2	cgybcmoB277
CmoCh12G002170	Melon (DHL92) v3.6.1	cmomedB174
CmoCh12G002170	Silver-seed gourd	carcmoB0869
CmoCh12G002170	Cucumber (Chinese Long) v3	cmocucB0199
CmoCh12G002170	Wax gourd	cmowgoB0225
CmoCh12G002170	Cucurbita moschata (Rifu)	cmocmoB006
CmoCh12G002170	Cucurbita moschata (Rifu)	cmocmoB142
CmoCh12G002170	Cucumber (Gy14) v1	cgycmoB0858
CmoCh12G002170	Cucurbita maxima (Rimu)	cmacmoB035
CmoCh12G002170	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G002170	Cucurbita maxima (Rimu)	cmacmoB456
CmoCh12G002170	Wild cucumber (PI 183967)	cmocpiB171
CmoCh12G002170	Cucumber (Chinese Long) v2	cmocuB168
CmoCh12G002170	Melon (DHL92) v3.5.1	cmomeB158
CmoCh12G002170	Watermelon (Charleston Gray)	cmowcgB161
CmoCh12G002170	Cucurbita pepo (Zucchini)	cmocpeB167
CmoCh12G002170	Cucurbita pepo (Zucchini)	cmocpeB173
CmoCh12G002170	Bottle gourd (USVL1VR-Ls)	cmolsiB164
CmoCh12G002170	Bottle gourd (USVL1VR-Ls)	cmolsiB175