CmoCh12G001760 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G001760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionFolic acid and derivative biosynthetic process
LocationCmo_Chr12 : 1148054 .. 1148321 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGGTAATATTTACATTTAATTCACATTTATTTTCTTAATTCTTTATGCTAATTTATATTATATTATCAACCTTATATTTTATATTTTCAGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA

mRNA sequence

ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA

Coding sequence (CDS)

ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA
Homology
[Close]
BLAST of CmoCh12G001760 vs. TrEMBL
Match: A0A0A0LNX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369800 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-09
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFN 59
           GE D + PHG KLLES+I+P +I H KGH +P LD +A+++M++FIH IS   N
Sbjct: 192 GEEDFLMPHGKKLLESYIEPTIITHPKGHTIPRLDDKALEVMESFIHRISKILN 245

[Close]
BLAST of CmoCh12G001760 vs. TrEMBL
Match: A0A067K402_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18678 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 3   VTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
           + GE D +KP G+ LLESF+DP+VI+H KGHI+P LD   +KIM +FI  I
Sbjct: 166 IIGEMDFLKPGGIDLLESFVDPVVIHHPKGHIIPRLDDNNIKIMLSFIEKI 216

[Close]
BLAST of CmoCh12G001760 vs. TrEMBL
Match: A0A067L2I6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15855 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-08
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNT 57
           GE D +KPHG++LLESF++P+VI+H KGH +P LD  + + M +FI  I NT
Sbjct: 165 GETDFLKPHGLELLESFVEPVVIHHPKGHTIPRLDETSQETMLSFIKKIENT 216

[Close]
BLAST of CmoCh12G001760 vs. TrEMBL
Match: B9T7U6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0409070 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 

Query: 3   VTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFI 51
           + GE+D MKP G+ LL SF+DP+VI+H KGHI+P LD  ++K M +FI
Sbjct: 231 IIGEKDFMKPGGIDLLGSFVDPVVIHHPKGHIIPRLDDISLKTMLSFI 278

[Close]
BLAST of CmoCh12G001760 vs. TrEMBL
Match: A0A164ZKK9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019298 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-07
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 3  VTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
          + GE D +KPHG  LLESF+DP+VI+H +GH +P LD + ++ M +F+  I
Sbjct: 1  MAGETDFLKPHGTDLLESFVDPVVIHHPRGHTIPRLDDKGLETMLSFLEKI 51

[Close]
BLAST of CmoCh12G001760 vs. TAIR10
Match: AT5G65400.1 (AT5G65400.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-08
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
           GERD +K  G  L+ESF++P+VI+HS GHI+P LD +A + M +F   I
Sbjct: 189 GERDFLKIEGEVLVESFVEPVVIHHSGGHIIPKLDTKAEETMLSFFQSI 237

[Close]
BLAST of CmoCh12G001760 vs. TAIR10
Match: AT4G24380.1 (AT4G24380.1 INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process)

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-08
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISN 56
           GE D +KP+G +L+ES+ +P+V++H KGH VP LD ++++ +  FI  + +
Sbjct: 166 GETDFLKPYGTQLIESYKNPVVVHHPKGHTVPRLDEKSLEKVTAFIDTLEH 216

[Close]
BLAST of CmoCh12G001760 vs. NCBI nr
Match: gi|449469815|ref|XP_004152614.1| (PREDICTED: dihydrofolate reductase [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-09
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFN 59
           GE D + PHG KLLES+I+P +I H KGH +P LD +A+++M++FIH IS   N
Sbjct: 192 GEEDFLMPHGKKLLESYIEPTIITHPKGHTIPRLDDKALEVMESFIHRISKILN 245

[Close]
BLAST of CmoCh12G001760 vs. NCBI nr
Match: gi|643718549|gb|KDP29743.1| (hypothetical protein JCGZ_18678 [Jatropha curcas])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 3   VTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
           + GE D +KP G+ LLESF+DP+VI+H KGHI+P LD   +KIM +FI  I
Sbjct: 166 IIGEMDFLKPGGIDLLESFVDPVVIHHPKGHIIPRLDDNNIKIMLSFIEKI 216

[Close]
BLAST of CmoCh12G001760 vs. NCBI nr
Match: gi|802673702|ref|XP_012081637.1| (PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 3   VTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
           + GE D +KP G+ LLESF+DP+VI+H KGHI+P LD   +KIM +FI  I
Sbjct: 228 IIGEMDFLKPGGIDLLESFVDPVVIHHPKGHIIPRLDDNNIKIMLSFIEKI 278

[Close]
BLAST of CmoCh12G001760 vs. NCBI nr
Match: gi|659088253|ref|XP_008444882.1| (PREDICTED: dihydrofolate reductase-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-08
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFN 59
           GE D + PHG KLLES+I+P +I H KGH +P LD +A+++M++FI  IS   N
Sbjct: 192 GEEDFLMPHGKKLLESYIEPTIITHPKGHTIPRLDDKALEVMESFIQRISKMLN 245

[Close]
BLAST of CmoCh12G001760 vs. NCBI nr
Match: gi|802570016|ref|XP_012067951.1| (PREDICTED: UPF0483 protein AGAP003155 [Jatropha curcas])

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-08
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNT 57
           GE D +KPHG++LLESF++P+VI+H KGH +P LD  + + M +FI  I NT
Sbjct: 165 GETDFLKPHGLELLESFVEPVVIHHPKGHTIPRLDETSQETMLSFIKKIENT 216

The following BLAST results are available for this feature:
BLAST of CmoCh12G001760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G001760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNX4_CUCSA3.9e-0953.70Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369800 PE=4 SV=1[more]
A0A067K402_JATCU1.9e-0856.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18678 PE=4 SV=1[more]
A0A067L2I6_JATCU3.3e-0853.85Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15855 PE=4 SV=1[more]
B9T7U6_RICCO1.6e-0756.25Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0409070 PE=4 SV=1[more]
A0A164ZKK9_DAUCA4.8e-0749.02Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019298 PE=4 SV=1[more]
BLAST of CmoCh12G001760 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65400.13.9e-0851.02 alpha/beta-Hydrolases superfamily protein[more]
AT4G24380.15.0e-0841.18 INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic a... [more]
BLAST of CmoCh12G001760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469815|ref|XP_004152614.1|5.6e-0953.70PREDICTED: dihydrofolate reductase [Cucumis sativus][more]
gi|643718549|gb|KDP29743.1|2.8e-0856.86hypothetical protein JCGZ_18678 [Jatropha curcas][more]
gi|802673702|ref|XP_012081637.1|2.8e-0856.86PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas][more]
gi|659088253|ref|XP_008444882.1|4.7e-0851.85PREDICTED: dihydrofolate reductase-like [Cucumis melo][more]
gi|802570016|ref|XP_012067951.1|4.7e-0853.85PREDICTED: UPF0483 protein AGAP003155 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0050896 response to stimulus
biological_process GO:0044699 single-organism process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G001760.1CmoCh12G001760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22778OVARIAN CANCER GENE-2 PROTEIN-RELATEDcoord: 5..56
score: 3.9
NoneNo IPR availablePANTHERPTHR22778:SF25ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 5..56
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G001760Watermelon (97103) v2cmowmbB146
CmoCh12G001760Watermelon (97103) v2cmowmbB151
CmoCh12G001760Watermelon (97103) v2cmowmbB182
CmoCh12G001760Wax gourdcmowgoB0218
CmoCh12G001760Wax gourdcmowgoB0210
CmoCh12G001760Cucurbita moschata (Rifu)cmocmoB005
CmoCh12G001760Cucurbita moschata (Rifu)cmocmoB145
CmoCh12G001760Cucurbita moschata (Rifu)cmocmoB151
CmoCh12G001760Cucurbita moschata (Rifu)cmocmoB158
CmoCh12G001760Cucumber (Gy14) v1cgycmoB0216
CmoCh12G001760Cucumber (Gy14) v1cgycmoB0450
CmoCh12G001760Cucumber (Gy14) v1cgycmoB0854
CmoCh12G001760Cucurbita maxima (Rimu)cmacmoB034
CmoCh12G001760Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G001760Cucurbita maxima (Rimu)cmacmoB635
CmoCh12G001760Cucurbita maxima (Rimu)cmacmoB767
CmoCh12G001760Cucurbita maxima (Rimu)cmacmoB772
CmoCh12G001760Wild cucumber (PI 183967)cmocpiB162
CmoCh12G001760Wild cucumber (PI 183967)cmocpiB167
CmoCh12G001760Wild cucumber (PI 183967)cmocpiB180
CmoCh12G001760Cucumber (Chinese Long) v2cmocuB164
CmoCh12G001760Cucumber (Chinese Long) v2cmocuB160
CmoCh12G001760Cucumber (Chinese Long) v2cmocuB177
CmoCh12G001760Melon (DHL92) v3.5.1cmomeB148
CmoCh12G001760Melon (DHL92) v3.5.1cmomeB159
CmoCh12G001760Melon (DHL92) v3.5.1cmomeB173
CmoCh12G001760Watermelon (Charleston Gray)cmowcgB129
CmoCh12G001760Watermelon (Charleston Gray)cmowcgB140
CmoCh12G001760Watermelon (Charleston Gray)cmowcgB161
CmoCh12G001760Watermelon (Charleston Gray)cmowcgB165
CmoCh12G001760Watermelon (97103) v1cmowmB137
CmoCh12G001760Watermelon (97103) v1cmowmB150
CmoCh12G001760Watermelon (97103) v1cmowmB161
CmoCh12G001760Cucurbita pepo (Zucchini)cmocpeB145
CmoCh12G001760Cucurbita pepo (Zucchini)cmocpeB148
CmoCh12G001760Cucurbita pepo (Zucchini)cmocpeB156
CmoCh12G001760Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G001760Bottle gourd (USVL1VR-Ls)cmolsiB155
CmoCh12G001760Bottle gourd (USVL1VR-Ls)cmolsiB159
CmoCh12G001760Bottle gourd (USVL1VR-Ls)cmolsiB179
CmoCh12G001760Cucumber (Gy14) v2cgybcmoB173
CmoCh12G001760Cucumber (Gy14) v2cgybcmoB274
CmoCh12G001760Cucumber (Gy14) v2cgybcmoB700
CmoCh12G001760Melon (DHL92) v3.6.1cmomedB163
CmoCh12G001760Melon (DHL92) v3.6.1cmomedB175
CmoCh12G001760Melon (DHL92) v3.6.1cmomedB191
CmoCh12G001760Silver-seed gourdcarcmoB0078
CmoCh12G001760Silver-seed gourdcarcmoB0082
CmoCh12G001760Silver-seed gourdcarcmoB0544
CmoCh12G001760Silver-seed gourdcarcmoB0868
CmoCh12G001760Silver-seed gourdcarcmoB1111
CmoCh12G001760Cucumber (Chinese Long) v3cmocucB0188
CmoCh12G001760Cucumber (Chinese Long) v3cmocucB0195
CmoCh12G001760Cucumber (Chinese Long) v3cmocucB0209