CmoCh12G000310 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G000310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(BnaA02g13350D protein) (BnaAnng14150D protein) (BnaC02g17510D protein) (BnaC06g26380D protein) (BnaC06g28890D protein)
LocationCmo_Chr12 : 179372 .. 180889 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATAGACTCATAGCCTCAGATCATTTCTCGAACAGATCTATTCCCTTCCCCGTAGAATCATCGAACTCCATCTCCAACTCCTGCCCCCGCCCTTTGTTCTCGTCCTCGTTCTTTCTCGAATTATAATTTGTTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGGTTCTCTCTCCATTTCCCTCCCTTCAGATTTCTCTAATTTTCTTCTACTTCTCATTTCATAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAGTATGAATTAAGTACAAAAAACAAAACCCTAGGGGGCAAATCTACGGCAGTTTATCTATGCGATTTTTGTAGAAATTTTGGTGATTAGAAATAACTAAGGTGTCTCTGCGTTCTTCTTTGCTGTTTCAGAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGGTATCAAATCGATAAGTTAAGATTTCTATGAGTATCGATTGTCTGTTCTAGAACAATGATAATGGGCTGGCTGATAAATTGTTGATTACTCATCTCTATGACTTCCCTGGTTATCAAATTGTAAACAATGCTCATTTCAATTTGGAGCTTTGCTGTTTGAATAATTGAACTTTTCATTTACTTGACTCAGTGTTGTGTTCATTACCTTCCTTGCTTCTATCTCAAATTTATACGTCCACACTCCATGGGGTTCTGGAGTTATCAATTTCCTGATCAGATACCAATGCAGCTACCTAAACGTTGCTTTTGTTGGGCAGAGTTTCCTCCAATGGAGCTCAATTTAATTGTTGAAAAATTGCATCTGAATCTTGATTAACATGGGGAAGACTCTCTACATAACTCTGTGCTACTTTTAGCTTCTTATTGAGATAAATGAATGCTTATTTTGATCCCTGACATGCTTGAAAAGTTTTCTAACTTTATATTTTACATTGGATGAGTATTCAGTACCTACTTTGTTTATCCATGTAGGATGACAGTTTCTTGTTTCTTTCTGTCTTTTCATGTAGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGTTGGAATTATTTGACCATTTTGATTGAAAAGTAGAATCATTTTTCAGTCTACAATAGATCTAGTTCAACCTTCCTACACTGATGTGGTCATTAGGGATTGGACCCAACAAGACTTCCTAGTTGTGATGCATTTGCATAATCACTTGAGAAGAATCATGTAGTATGGTTATTACAGGTAGTAGAGGAATTATGTAGTTTGCTAGTACCCTAGAAGTTTATAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA

mRNA sequence

TCCATAGACTCATAGCCTCAGATCATTTCTCGAACAGATCTATTCCCTTCCCCGTAGAATCATCGAACTCCATCTCCAACTCCTGCCCCCGCCCTTTGTTCTCGTCCTCGTTCTTTCTCGAATTATAATTTGTTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA

Coding sequence (CDS)

ATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA
Homology
[Close]
BLAST of CmoCh12G000310 vs. TrEMBL
Match: A0A0A0LKK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349670 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. TrEMBL
Match: A0A0B2PB02_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008344 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVAT+FAM+LGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATYFAMTLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. TrEMBL
Match: C6SYT6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G172800 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVAT+FAM+LGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATYFAMTLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. TrEMBL
Match: A0A0V0GR43_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.5e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMS+GAF FWQTMDK+HVWIAL QDEK
Sbjct: 1  MVKVATFFAMSVGAFAFWQTMDKIHVWIALHQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. TrEMBL
Match: K4BYB2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.5e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMS+GAF FWQTMDK+HVWIAL QDEK
Sbjct: 1  MVKVATFFAMSVGAFAFWQTMDKIHVWIALHQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. TAIR10
Match: AT1G67785.1 (AT1G67785.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKV T+F M+L AF FWQ+MDK+HVWIAL QDEK
Sbjct: 1  MVKVLTYFGMTLAAFAFWQSMDKVHVWIALHQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. NCBI nr
Match: gi|700207214|gb|KGN62333.1| (hypothetical protein Csa_2G349670 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.5e-10
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. NCBI nr
Match: gi|356512650|ref|XP_003525031.1| (PREDICTED: uncharacterized protein LOC100781005 [Glycine max])

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVAT+FAM+LGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATYFAMTLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. NCBI nr
Match: gi|590695413|ref|XP_007044883.1| (Uncharacterized protein TCM_010653 [Theobroma cacao])

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVAT+FAM+LGAFVFWQTMDK+HVWIAL QDEK
Sbjct: 1  MVKVATYFAMTLGAFVFWQTMDKVHVWIALHQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. NCBI nr
Match: gi|747050199|ref|XP_011071163.1| (PREDICTED: uncharacterized protein LOC105156659 [Sesamum indicum])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMS GAF+FWQTMDK+HVWIAL QDEK
Sbjct: 1  MVKVATFFAMSFGAFLFWQTMDKVHVWIALHQDEK 35

[Close]
BLAST of CmoCh12G000310 vs. NCBI nr
Match: gi|595850006|ref|XP_007209835.1| (hypothetical protein PRUPE_ppa014542mg [Prunus persica])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEKSFILHSSID 45
          MVKVAT+FAM+LGAFVFWQ+MDK+HVWIAL QDEK   L   ++
Sbjct: 1  MVKVATYFAMTLGAFVFWQSMDKVHVWIALHQDEKQERLERELE 44

The following BLAST results are available for this feature:
BLAST of CmoCh12G000310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G000310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKK4_CUCSA4.5e-1097.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349670 PE=4 SV=1[more]
A0A0B2PB02_GLYSO2.2e-0991.43Uncharacterized protein OS=Glycine soja GN=glysoja_008344 PE=4 SV=1[more]
C6SYT6_SOYBN2.2e-0991.43Uncharacterized protein OS=Glycine max GN=GLYMA_05G172800 PE=2 SV=1[more]
A0A0V0GR43_SOLCH6.5e-0988.57Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
K4BYB2_SOLLC6.5e-0988.57Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of CmoCh12G000310 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67785.11.5e-0974.29 unknown protein[more]
BLAST of CmoCh12G000310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207214|gb|KGN62333.1|6.5e-1097.14hypothetical protein Csa_2G349670 [Cucumis sativus][more]
gi|356512650|ref|XP_003525031.1|3.2e-0991.43PREDICTED: uncharacterized protein LOC100781005 [Glycine max][more]
gi|590695413|ref|XP_007044883.1|9.4e-0988.57Uncharacterized protein TCM_010653 [Theobroma cacao][more]
gi|747050199|ref|XP_011071163.1|1.2e-0888.57PREDICTED: uncharacterized protein LOC105156659 [Sesamum indicum][more]
gi|595850006|ref|XP_007209835.1|1.6e-0870.45hypothetical protein PRUPE_ppa014542mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G000310.1CmoCh12G000310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37711FAMILY NOT NAMEDcoord: 2..35
score: 8.7
NoneNo IPR availablePANTHERPTHR37711:SF1SUBFAMILY NOT NAMEDcoord: 2..35
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G000310gCucsa.394600.2Cucumber (Gy14) v1cgycmoB1085
CmoCh12G000310CmaCh12G000410Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G000310CmaCh05G000500Cucurbita maxima (Rimu)cmacmoB766
CmoCh12G000310Cla022731Watermelon (97103) v1cmowmB139
CmoCh12G000310Csa2G349670Cucumber (Chinese Long) v2cmocuB151
CmoCh12G000310MELO3C010701Melon (DHL92) v3.5.1cmomeB152
CmoCh12G000310ClCG08G017580Watermelon (Charleston Gray)cmowcgB164
CmoCh12G000310CSPI02G17440Wild cucumber (PI 183967)cmocpiB152
CmoCh12G000310Cp4.1LG07g00270Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G000310MELO3C010701.2Melon (DHL92) v3.6.1cmomedB168
CmoCh12G000310CsaV3_2G025040Cucumber (Chinese Long) v3cmocucB0178
CmoCh12G000310Cla97C08G161300Watermelon (97103) v2cmowmbB181
CmoCh12G000310CsGy2G017410Cucumber (Gy14) v2cgybcmoB162
CmoCh12G000310Carg21839Silver-seed gourdcarcmoB0684
CmoCh12G000310Carg20485Silver-seed gourdcarcmoB0855
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G000310CmoCh05G000580Cucurbita moschata (Rifu)cmocmoB152
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G000310Melon (DHL92) v3.6.1cmomedB150
CmoCh12G000310Silver-seed gourdcarcmoB0339
CmoCh12G000310Watermelon (97103) v2cmowmbB167
CmoCh12G000310Cucurbita moschata (Rifu)cmocmoB147
CmoCh12G000310Cucurbita maxima (Rimu)cmacmoB680
CmoCh12G000310Cucumber (Chinese Long) v2cmocuB173
CmoCh12G000310Melon (DHL92) v3.5.1cmomeB137
CmoCh12G000310Watermelon (Charleston Gray)cmowcgB150
CmoCh12G000310Watermelon (97103) v1cmowmB146
CmoCh12G000310Cucurbita pepo (Zucchini)cmocpeB150
CmoCh12G000310Cucurbita pepo (Zucchini)cmocpeB162
CmoCh12G000310Bottle gourd (USVL1VR-Ls)cmolsiB178