CmoCh12G000260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G000260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	Cmo_Chr12 : 155285 .. 157502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAGGATCTTAAGGGATGTTATTGGTGGCCAGGGATGAAAAAGGAGATAGCAGAATTTGTAAGCCGATGCTTGACCTGTCAGCAGGTGAAGGCCCCGAGGCTGCGTCCAGCAGGACTGCTACAACCCCTAAAGGTTCCGCAATGGAAATGGGAAGCAGTTTGCATGGATTTTATCTCAGGCTTGCCCAAGACTAAGCAGAACTTCAACGTAATCTGGGTAGTTGTTGATAGACTTACCAAAATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTTTAAGGAGGGGAGAGTTTGTAACGTCCAAAAAAAAAACGGCTGAGGGGCAAAAAGGACATTTTACCCCTCAGCCCATTATAGGGGTCTTGAGCGTTCCCCTCAGAGTACCTGCAAAAGAAGAAGAGTGAGAGAGAAGAACTGAGAGAAAGTTTGAGAGAGAAAACTGGTTTGCCGGAGTTTTCGTCGGAGAGTCGCCGACGGAATCCATTTCCTACCAAGACCTGTACTCTGGAGCCCTTCTTGGAGTGAAGTAAGAACTCGTGTGGAGATTTCCTCCTCCTTCCTCAAGATCAGAAAGAAAACCCGCAAAGTAAGATTTCGAACTATACCTTCCAGATCTTAGATCTTTGTTTAGGAGTAGAATGGTTAAGTCTACTACCTTTGTCCAGGGAGGATTCGCTACCGATCTTGGTGAGGGAAACGGACGGAACGACGAGATCTGAGAGACTATCCAAGAACGGTAAGGTTGTTACCGAACCTCTTTTCGACGCTCGAAACTCATTGTGTGACTAAGCAAAAATCAAGAAAATAATATTGGCACGTAGGTTGATAGATGATCTATAACTTTGTTGAAGAAACCACCTCTGTTTGGGTTAAGAATCGAAAGATAGAAAATGGAAAGAAACCTCGGAAAAACTAATCGGAAGCCTTGATTTTCTGGTAGGAGGAGAGAGAAGCCGCCGGCGTGCCACGCGTCAACCAACCAGAGGGCCGCGTGCGCCAATCGCCCCCGGACACGCGTCGAGCGCCGCCTGGGAAAACGCGGCTCCAGCGCTCCTGCGACACGCGTCCCTGGCTCCGCGACCCGACCCGCGCTCCTTGGCTGACCCGATACCCGCACGGCGAACCGAATCCAGTTGACGACCCGCGGTCCACCCGAATCACCGCTTCCGACCCGAACCCGCGACCCGCGACTGCAGGAATTTCTGGGCGCGTGACACTCGCGCGTGGAACCCGCGAGTGGCTGCTCCCCAGCGCGTGA

mRNA sequence

ATGTATCAGGATCTTAAGGGATGTTATTGGTGGCCAGGGATGAAAAAGGAGATAGCAGAATTTGTAAGCCGATGCTTGACCTGTCAGCAGGTGAAGGCCCCGAGGCTGCGTCCAGCAGGACTGCTACAACCCCTAAAGGTTCCGCAATGGAAATGGGAAGCAGTTTGCATGGATTTTATCTCAGGCTTGCCCAAGACTAAGCAGAACTTCAACGTAATCTGGGTAGTTGTTGATAGACTTACCAAAATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGAGGAGAGAGAAGCCGCCGGCGTGCCACGCGTCAACCAACCAGAGGGCCGCGTGCGCCAATCGCCCCCGGACACGCGTCGAGCGCCGCCTGGGAAAACGCGGCTCCAGCGCTCCTGCGACACGCGTCCCTGGCTCCGCGACCCGACCCGCGCTCCTTGGCTGACCCGATACCCGCACGGCGAACCGAATCCAGTTGACGACCCGCGGTCCACCCGAATCACCGCTTCCGACCCGAACCCGCGACCCGCGACTGCAGGAATTTCTGGGCGCGTGACACTCGCGCGTGGAACCCGCGAGTGGCTGCTCCCCAGCGCGTGA

Coding sequence (CDS)

ATGTATCAGGATCTTAAGGGATGTTATTGGTGGCCAGGGATGAAAAAGGAGATAGCAGAATTTGTAAGCCGATGCTTGACCTGTCAGCAGGTGAAGGCCCCGAGGCTGCGTCCAGCAGGACTGCTACAACCCCTAAAGGTTCCGCAATGGAAATGGGAAGCAGTTTGCATGGATTTTATCTCAGGCTTGCCCAAGACTAAGCAGAACTTCAACGTAATCTGGGTAGTTGTTGATAGACTTACCAAAATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGAGGAGAGAGAAGCCGCCGGCGTGCCACGCGTCAACCAACCAGAGGGCCGCGTGCGCCAATCGCCCCCGGACACGCGTCGAGCGCCGCCTGGGAAAACGCGGCTCCAGCGCTCCTGCGACACGCGTCCCTGGCTCCGCGACCCGACCCGCGCTCCTTGGCTGACCCGATACCCGCACGGCGAACCGAATCCAGTTGACGACCCGCGGTCCACCCGAATCACCGCTTCCGACCCGAACCCGCGACCCGCGACTGCAGGAATTTCTGGGCGCGTGACACTCGCGCGTGGAACCCGCGAGTGGCTGCTCCCCAGCGCGTGA

Homology

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BLAST of CmoCh12G000260 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-52
Identity = 119/356 (33.43%), Postives = 185/356 (51.97%), Query Frame = 1


Query: 9    YWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQ 68
            Y+WP ++  I +++  C+ CQ +K+ R R  GLLQPL + + +W  + MDF++GLP T  
Sbjct: 1126 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1185

Query: 69   NFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQF 128
            N N+I VVVDR +K AHFI  + T    +   L  R I   HG P +I SDRD R T+  
Sbjct: 1186 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADK 1245

Query: 129  WKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYN 188
            ++ L K LG +   S+A HPQTDGQ+ER  Q L  +LRA        W  +LP IEF YN
Sbjct: 1246 YQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYN 1305

Query: 189  NSYQATIQMAPFEAMYGRRCRTPVFW--EEVGTQQLLGPELVQVTNAAVQKIKQRILTAQ 248
            ++   T+  +PFE   G    TP     +EV  +     EL +   A   + K+++  AQ
Sbjct: 1306 STPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQ 1365

Query: 249  SRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAY 308
               ++  + RR+ L   +G HV V         + G   K+   +VGPF +++++   AY
Sbjct: 1366 IEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVVKKINDNAY 1425

Query: 309  KIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDT 363
            ++ L  +    H V +V  L+K+   P    +++ +   E +      + ++  DT
Sbjct: 1426 ELDLNSH-KKKHRVINVQFLKKFVYRPDAYPKNKPISSTERIKRAHEVTALIGIDT 1477

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BLAST of CmoCh12G000260 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-52
Identity = 121/341 (35.48%), Postives = 181/341 (53.08%), Query Frame = 1


Query: 9    YWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQ 68
            Y+WP ++  I +++  C+ CQ +K+ R R  GLLQPL + + +W  + MDF++GLP T  
Sbjct: 1152 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1211

Query: 69   NFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQF 128
            N N+I VVVDR +K AHFI  + T    +   L  R I   HG P +I SDRD R T+  
Sbjct: 1212 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADK 1271

Query: 129  WKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYN 188
            ++ L K LG +   S+A HPQTDGQ+ER  Q L  +LRA V      W  +LP IEF YN
Sbjct: 1272 YQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYN 1331

Query: 189  NSYQATIQMAPFEAMYGRRCRTPVFW--EEVGTQQLLGPELVQVTNAAVQKIKQRILTAQ 248
            ++   T+  +PFE   G    TP     +EV  +     EL +   A   + K+++  AQ
Sbjct: 1332 STPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQ 1391

Query: 249  SRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAY 308
               ++  + RR+ L   +G HV V         + G   K+   +VGPF +++++   AY
Sbjct: 1392 IEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVVKKINDNAY 1451

Query: 309  KIALPPNLAAVHNVFHVSMLRK-YTSDPTHVIEHETLPLRE 347
            ++ L  +    H V +V  L+  YT        +++ PLRE
Sbjct: 1452 ELDLNSH-KKKHRVINVQFLKSLYTVQTRTQRINQSAPLRE 1488

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BLAST of CmoCh12G000260 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.5e-50
Identity = 119/359 (33.15%), Postives = 192/359 (53.48%), Query Frame = 1


Query: 9    YWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQ 68
            + W G++K+I E+V  C TCQ  K+   +P G LQP+   +  WE++ MDFI+ LP++  
Sbjct: 941  FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 1000

Query: 69   NFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQF 128
             +N ++VVVDR +KMA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ 
Sbjct: 1001 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1060

Query: 129  WKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYN 188
            WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ +YN
Sbjct: 1061 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1120

Query: 189  NSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSR 248
            N+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   +
Sbjct: 1121 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1180

Query: 249  QKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYK 308
             K Y D++ +++ EF+ G  V VK     G +   K  KL+P F GPF +L++ G   Y+
Sbjct: 1181 MKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYE 1240

Query: 309  IALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 351
            + LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1241 LDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

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BLAST of CmoCh12G000260 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.5e-50
Identity = 119/359 (33.15%), Postives = 192/359 (53.48%), Query Frame = 1


Query: 9    YWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQ 68
            + W G++K+I E+V  C TCQ  K+   +P G LQP+   +  WE++ MDFI+ LP++  
Sbjct: 941  FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 1000

Query: 69   NFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQF 128
             +N ++VVVDR +KMA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ 
Sbjct: 1001 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1060

Query: 129  WKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYN 188
            WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ +YN
Sbjct: 1061 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1120

Query: 189  NSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSR 248
            N+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   +
Sbjct: 1121 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1180

Query: 249  QKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYK 308
             K Y D++ +++ EF+ G  V VK     G +   K  KL+P F GPF +L++ G   Y+
Sbjct: 1181 MKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYE 1240

Query: 309  IALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 351
            + LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1241 LDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh12G000260 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.5e-50
Identity = 119/359 (33.15%), Postives = 192/359 (53.48%), Query Frame = 1


Query: 9    YWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQ 68
            + W G++K+I E+V  C TCQ  K+   +P G LQP+   +  WE++ MDFI+ LP++  
Sbjct: 941  FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS- 1000

Query: 69   NFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQF 128
             +N ++VVVDR +KMA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ 
Sbjct: 1001 GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQT 1060

Query: 129  WKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYN 188
            WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ +YN
Sbjct: 1061 WKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1120

Query: 189  NSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSR 248
            N+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   +
Sbjct: 1121 NAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIK 1180

Query: 249  QKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYK 308
             K Y D++ +++ EF+ G  V VK     G +   K  KL+P F GPF +L++ G   Y+
Sbjct: 1181 MKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYE 1240

Query: 309  IALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 351
            + LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1241 LDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

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BLAST of CmoCh12G000260 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 4.5e-167
Identity = 278/379 (73.35%), Postives = 328/379 (86.54%), Query Frame = 1


Query: 14  MKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQNFNVI 73
           MK+E+AEFVS+CL CQQVKAPR +PAGLLQPL +P+WKWE V MDFI+GLP+T + F VI
Sbjct: 534 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 593

Query: 74  WVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQ 133
           WVVVDRLTK AHF+PGK+TY   +WAQLY+ EIVRLHGVPVSIVSDRD RFTS+FWK LQ
Sbjct: 594 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 653

Query: 134 KALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQA 193
            A+GT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F G WD HL L+EFAYNNSYQA
Sbjct: 654 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA 713

Query: 194 TIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYA 253
           TI MAPFEA+YGR CR+PV W EVG Q+L+GPELVQ TN A+QKI+ R+ TAQSRQKSYA
Sbjct: 714 TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA 773

Query: 254 DLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPN 313
           D+RR+DLEFEVG  VF+KVAPM+GV+RF ++GKLSPRFVGPFEILER+G VAY++ALPP+
Sbjct: 774 DVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS 833

Query: 314 LAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLV 373
           L+ VH+VFHVSMLRKY  DP+HV+++E L + E+LSY  +P ++LAR  + LRNK IPLV
Sbjct: 834 LSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLV 893

Query: 374 KVAWGNHRHEEATWEREED 393
           KV W NHR EEATWERE+D
Sbjct: 894 KVLWRNHRVEEATWEREDD 912

[Close]

BLAST of CmoCh12G000260 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 3.3e-157
Identity = 257/392 (65.56%), Postives = 324/392 (82.65%), Query Frame = 1


Query: 1    MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
            MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 1045 MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 1104

Query: 61   SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
            +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 1105 TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 1164

Query: 121  DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
              +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LE MLRACV+D    W+++L
Sbjct: 1165 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLGVRWEQYL 1224

Query: 181  PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
            PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 1225 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 1284

Query: 241  RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
            R+LTAQSRQKSYAD RRRDLEF+VG HVF+KV+P +GVMRFGKKGKLSPR++GPFEILE+
Sbjct: 1285 RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILEK 1344

Query: 301  VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
            VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 1345 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 1404

Query: 361  DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
              ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 1405 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 1436

[Close]

BLAST of CmoCh12G000260 vs. TrEMBL
Match: A0A061FXC6_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 5.6e-157
Identity = 256/392 (65.31%), Postives = 324/392 (82.65%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 46  MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 105

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 106 TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 165

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 166 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYL 225

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 226 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 285

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSRQKSYAD RRR LEF+VG HVF+KV+P +G+MRFGKKGKLSPR++GPFEILE+
Sbjct: 286 RMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEK 345

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 346 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 405

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 406 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 437

[Close]

BLAST of CmoCh12G000260 vs. TrEMBL
Match: A0A061FS42_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044868 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 7.3e-157
Identity = 257/392 (65.56%), Postives = 323/392 (82.40%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 1   MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 60

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 61  TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 120

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQT GQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 121 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTGGQSERTIQTLEDMLRACVIDLGVRWEQYL 180

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+PV W EVG ++LLGPELVQ     +  I+Q
Sbjct: 181 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPVGWLEVGERKLLGPELVQDATEKIHMIRQ 240

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSRQKSYAD RRRDLEF+VG HVF+KV P +GVMRFGKKGKLSPR++GPFEIL++
Sbjct: 241 RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVLPTKGVMRFGKKGKLSPRYIGPFEILDK 300

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 301 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 360

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 361 QVKKLRSKDVASVKVLWWNHTSEEVTWEAEDE 392

[Close]

BLAST of CmoCh12G000260 vs. TrEMBL
Match: A0A061GA43_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 9.5e-157
Identity = 256/392 (65.31%), Postives = 323/392 (82.40%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 277 MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 336

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVD+LTK AHF+P KTTY    +A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 337 TGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSDR 396

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 397 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYL 456

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 457 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 516

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSRQKSYAD RRRDLEF+VG HVF+K +P +GVMRFGKKGKLSPR++GPF+ILE+
Sbjct: 517 RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPRYIGPFKILEK 576

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DLSYE +P  IL R
Sbjct: 577 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLSYEEQPVAILDR 636

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 637 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 668

[Close]

BLAST of CmoCh12G000260 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 595.9 bits (1535), Expect = 6.5e-167
Identity = 278/379 (73.35%), Postives = 328/379 (86.54%), Query Frame = 1


Query: 14  MKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFISGLPKTKQNFNVI 73
           MK+E+AEFVS+CL CQQVKAPR +PAGLLQPL +P+WKWE V MDFI+GLP+T + F VI
Sbjct: 534 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 593

Query: 74  WVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQ 133
           WVVVDRLTK AHF+PGK+TY   +WAQLY+ EIVRLHGVPVSIVSDRD RFTS+FWK LQ
Sbjct: 594 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 653

Query: 134 KALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQA 193
            A+GT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F G WD HL L+EFAYNNSYQA
Sbjct: 654 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA 713

Query: 194 TIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYA 253
           TI MAPFEA+YGR CR+PV W EVG Q+L+GPELVQ TN A+QKI+ R+ TAQSRQKSYA
Sbjct: 714 TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA 773

Query: 254 DLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPN 313
           D+RR+DLEFEVG  VF+KVAPM+GV+RF ++GKLSPRFVGPFEILER+G VAY++ALPP+
Sbjct: 774 DVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPS 833

Query: 314 LAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLV 373
           L+ VH+VFHVSMLRKY  DP+HV+++E L + E+LSY  +P ++LAR  + LRNK IPLV
Sbjct: 834 LSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLV 893

Query: 374 KVAWGNHRHEEATWEREED 393
           KV W NHR EEATWERE+D
Sbjct: 894 KVLWRNHRVEEATWEREDD 912

[Close]

BLAST of CmoCh12G000260 vs. NCBI nr
Match: gi|590649404|ref|XP_007032400.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 563.1 bits (1450), Expect = 4.7e-157
Identity = 257/392 (65.56%), Postives = 324/392 (82.65%), Query Frame = 1


Query: 1    MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
            MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 1045 MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 1104

Query: 61   SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
            +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 1105 TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 1164

Query: 121  DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
              +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LE MLRACV+D    W+++L
Sbjct: 1165 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLGVRWEQYL 1224

Query: 181  PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
            PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 1225 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 1284

Query: 241  RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
            R+LTAQSRQKSYAD RRRDLEF+VG HVF+KV+P +GVMRFGKKGKLSPR++GPFEILE+
Sbjct: 1285 RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILEK 1344

Query: 301  VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
            VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 1345 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 1404

Query: 361  DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
              ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 1405 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 1436

[Close]

BLAST of CmoCh12G000260 vs. NCBI nr
Match: gi|590667202|ref|XP_007037177.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 562.4 bits (1448), Expect = 8.0e-157
Identity = 256/392 (65.31%), Postives = 324/392 (82.65%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 46  MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 105

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 106 TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 165

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 166 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYL 225

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 226 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 285

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSRQKSYAD RRR LEF+VG HVF+KV+P +G+MRFGKKGKLSPR++GPFEILE+
Sbjct: 286 RMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEK 345

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 346 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 405

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 406 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 437

[Close]

BLAST of CmoCh12G000260 vs. NCBI nr
Match: gi|590568709|ref|XP_007010873.1| (Uncharacterized protein TCM_044868 [Theobroma cacao])

HSP 1 Score: 562.0 bits (1447), Expect = 1.0e-156
Identity = 257/392 (65.56%), Postives = 323/392 (82.40%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 1   MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 60

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 61  TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 120

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQT GQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 121 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTGGQSERTIQTLEDMLRACVIDLGVRWEQYL 180

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+PV W EVG ++LLGPELVQ     +  I+Q
Sbjct: 181 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPVGWLEVGERKLLGPELVQDATEKIHMIRQ 240

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSRQKSYAD RRRDLEF+VG HVF+KV P +GVMRFGKKGKLSPR++GPFEIL++
Sbjct: 241 RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVLPTKGVMRFGKKGKLSPRYIGPFEILDK 300

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VGAVAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 301 VGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 360

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 361 QVKKLRSKDVASVKVLWWNHTSEEVTWEAEDE 392

[Close]

BLAST of CmoCh12G000260 vs. NCBI nr
Match: gi|590633659|ref|XP_007028165.1| (Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao])

HSP 1 Score: 561.6 bits (1446), Expect = 1.4e-156
Identity = 255/392 (65.05%), Postives = 323/392 (82.40%), Query Frame = 1


Query: 1   MYQDLKGCYWWPGMKKEIAEFVSRCLTCQQVKAPRLRPAGLLQPLKVPQWKWEAVCMDFI 60
           MYQDLK  YWW G+K+++AEFVS+CL CQQVKA   +PAGLLQPL VP+WKWE + MDF+
Sbjct: 119 MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV 178

Query: 61  SGLPKTKQNFNVIWVVVDRLTKMAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDR 120
           +GLP+T   ++ IW+VVDRLTK AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR
Sbjct: 179 TGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDR 238

Query: 121 DTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHL 180
             +FTS+FW  LQ+ALGT+L FSTAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++L
Sbjct: 239 GAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYL 298

Query: 181 PLIEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQ 240
           PL+EFAYNNS+Q +IQMAPFEA+YGRRCR+P+ W EVG ++LLGPELVQ     +  I+Q
Sbjct: 299 PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ 358

Query: 241 RILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILER 300
           R+LTAQSR KSYAD RRRDLEF+VG HVF+KV+P +GVMRFGKKGKLSPR++GPFEIL++
Sbjct: 359 RMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILDK 418

Query: 301 VGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILAR 360
           VG VAY++ALPP+L+ +H VFHVSMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R
Sbjct: 419 VGTVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDR 478

Query: 361 DTRRLRNKVIPLVKVAWGNHRHEEATWEREED 393
             ++LR+K +  VKV W NH  EE TWE E++
Sbjct: 479 QVKKLRSKDVASVKVLWRNHTSEEVTWEAEDE 510

The following BLAST results are available for this feature:

BLAST of CmoCh12G000260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YG31B_YEAST	5.3e-52	33.43	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	5.3e-52	35.48	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF26_SCHPO	6.5e-50	33.15	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF28_SCHPO	6.5e-50	33.15	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF27_SCHPO	6.5e-50	33.15	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh12G000260 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KB0_CUCME	4.5e-167	73.35	Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061EEG7_THECC	3.3e-157	65.56	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061FXC6_THECC	5.6e-157	65.31	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV...	[more]
A0A061FS42_THECC	7.3e-157	65.56	Uncharacterized protein OS=Theobroma cacao GN=TCM_044868 PE=4 SV=1	[more]
A0A061GA43_THECC	9.5e-157	65.31	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV...	[more]

BLAST of CmoCh12G000260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G000260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|28558781\|gb\|AAO45752.1\|	6.5e-167	73.35	pol protein [Cucumis melo subsp. melo]	[more]
gi\|590649404\|ref\|XP_007032400.1\|	4.7e-157	65.56	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590667202\|ref\|XP_007037177.1\|	8.0e-157	65.31	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590568709\|ref\|XP_007010873.1\|	1.0e-156	65.56	Uncharacterized protein TCM_044868 [Theobroma cacao]	[more]
gi\|590633659\|ref\|XP_007028165.1\|	1.4e-156	65.05	Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR016197	Chromo-like_dom_sf
IPR023780	Chromo_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000260.1	CmoCh12G000260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 53..164 score: 1.8
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 44..207 score: 18
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 52..211 score: 2.0
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 45..201 score: 2.28
IPR016197	Chromo domain-like	unknown	SSF54160	Chromo domain-like	coord: 316..392 score: 2.7
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 354..392 score: 7.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..392 score: 4.6E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..392 score: 4.6E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G000260	Cucumber (Gy14) v2	cgybcmoB162
CmoCh12G000260	Melon (DHL92) v3.6.1	cmomedB150
CmoCh12G000260	Melon (DHL92) v3.6.1	cmomedB168
CmoCh12G000260	Silver-seed gourd	carcmoB0339
CmoCh12G000260	Silver-seed gourd	carcmoB0684
CmoCh12G000260	Silver-seed gourd	carcmoB0855
CmoCh12G000260	Cucumber (Chinese Long) v3	cmocucB0178
CmoCh12G000260	Watermelon (97103) v2	cmowmbB167
CmoCh12G000260	Watermelon (97103) v2	cmowmbB181
CmoCh12G000260	Wax gourd	cmowgoB0192
CmoCh12G000260	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh12G000260	Cucurbita moschata (Rifu)	cmocmoB152
CmoCh12G000260	Cucumber (Gy14) v1	cgycmoB1085
CmoCh12G000260	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G000260	Cucurbita maxima (Rimu)	cmacmoB680
CmoCh12G000260	Cucurbita maxima (Rimu)	cmacmoB766
CmoCh12G000260	Wild cucumber (PI 183967)	cmocpiB152
CmoCh12G000260	Cucumber (Chinese Long) v2	cmocuB173
CmoCh12G000260	Cucumber (Chinese Long) v2	cmocuB151
CmoCh12G000260	Melon (DHL92) v3.5.1	cmomeB137
CmoCh12G000260	Melon (DHL92) v3.5.1	cmomeB152
CmoCh12G000260	Watermelon (Charleston Gray)	cmowcgB150
CmoCh12G000260	Watermelon (Charleston Gray)	cmowcgB164
CmoCh12G000260	Watermelon (97103) v1	cmowmB139
CmoCh12G000260	Watermelon (97103) v1	cmowmB146
CmoCh12G000260	Cucurbita pepo (Zucchini)	cmocpeB150
CmoCh12G000260	Cucurbita pepo (Zucchini)	cmocpeB162
CmoCh12G000260	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G000260	Bottle gourd (USVL1VR-Ls)	cmolsiB178