CmoCh12G000100 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G000100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr12 : 55850 .. 56768 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTTCTAATGGTGCAGGAGGTAGCTGAAAATTTGATTCTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAATGTTGAGCCAATCTTCTCTTCCACGAGTTGCTCGTTCTCATGTTAGTCAGGTATCGTGAAATTTTGCCTCAAATAGTACTTTCTCTTCTAGCTCCACTTTAAAGTAAGAATATTTGTTGAGATAGAACTCGTTATTCAATAGTGTGGTTTTGACAGTAGAGATTAGCATTGTTGTTTAATAAAACTTCCAGTTTTGCAATTTTCTGCTTCAGCTTATGGATCATGATTCCCAACCTCTCAATCTTCACTACTTTTCTATTTCTGACCATCTCAAATTAATTTTATTTGGTGTGAAGATATATATAAAATATTAGAATTCAACTTGTTGTGTTTTTGGAAATATCACAGAGGGCCGTATGCCGTTTTATTTCCTCATGTCTTCTGATTATTTCGTATGTTCGTCCAAGTTTGGTAGTTAAATTGAACACCTACATTTTCGAGGAATGTCCCAAAGGGCTGACTTTATTAAGAGAACCGGAGGATTTTATTGGTAGGTTAATGTCCATTTAAATTTTGATTTTTAAAATTTGAAAAGTGTGAGGGTTTTTCGTTTTAATTTATTGTCAATAAACAAAATATGTATAGTTCATAAAAGTCAATAAAATCAATATTAATTCCTCTTCGATAAGATTCCATCTGACATCTCGTTTCTCTATTATAGTTGCTTTCTTTCATCTCTCACTTCTTCAGGAACTATTGGCGTCTCCAAAGGAGATTGAACCTTTTGGTATCCATCACGCATCTCAAATGGCTGCTCTGGACTGCATTGTATCTGTTGAAGGCGATGGTGTTTATATCCTCATATACTGGAAACATGGCTACAACAGTTGA

mRNA sequence

ATGGTTCTTCTAATGGTGCAGGAGGTAGCTGAAAATTTGATTCTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAATGTTGAGCCAATCTTCTCTTCCACGAGTTGCTCGTTCTCATGTTAGTCAGGAACTATTGGCGTCTCCAAAGGAGATTGAACCTTTTGGTATCCATCACGCATCTCAAATGGCTGCTCTGGACTGCATTGTATCTGTTGAAGGCGATGGTGTTTATATCCTCATATACTGGAAACATGGCTACAACAGTTGA

Coding sequence (CDS)

ATGGTTCTTCTAATGGTGCAGGAGGTAGCTGAAAATTTGATTCTCATGCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAATGTTGAGCCAATCTTCTCTTCCACGAGTTGCTCGTTCTCATGTTAGTCAGGAACTATTGGCGTCTCCAAAGGAGATTGAACCTTTTGGTATCCATCACGCATCTCAAATGGCTGCTCTGGACTGCATTGTATCTGTTGAAGGCGATGGTGTTTATATCCTCATATACTGGAAACATGGCTACAACAGTTGA
Homology
[Close]
BLAST of CmoCh12G000100 vs. TrEMBL
Match: A0A0A0LDZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889860 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-07
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 6   VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ 47
           ++EVAE LI+MHEECVDGNFSSIE L QS  P+VA +HV+Q
Sbjct: 91  IEEVAEKLIIMHEECVDGNFSSIERLRQSPRPQVAHAHVNQ 131

[Close]
BLAST of CmoCh12G000100 vs. NCBI nr
Match: gi|449436990|ref|XP_004136275.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-07
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 6   VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ 47
           ++EVAE LI+MHEECVDGNFSSIE L QS  P+VA +HV+Q
Sbjct: 91  IEEVAEKLIIMHEECVDGNFSSIERLRQSPRPQVAHAHVNQ 131

[Close]
BLAST of CmoCh12G000100 vs. NCBI nr
Match: gi|659132454|ref|XP_008466207.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-06
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 6   VQEVAENLILMHEECVDGNFSSIEMLSQSSLPRVARSHVSQ 47
           ++EVAE LI MHEECVD NFSSIE L QS  P+VA +HV+Q
Sbjct: 91  IEEVAERLIFMHEECVDRNFSSIERLRQSPRPQVAHAHVNQ 131

The following BLAST results are available for this feature:
BLAST of CmoCh12G000100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G000100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDZ8_CUCSA4.4e-0770.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889860 PE=4 SV=1[more]
BLAST of CmoCh12G000100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G000100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436990|ref|XP_004136275.1|6.3e-0770.73PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis sativus][more]
gi|659132454|ref|XP_008466207.1|9.1e-0668.29PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G000100.1CmoCh12G000100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G000100Cp4.1LG07g00110Cucurbita pepo (Zucchini)cmocpeB174
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G000100Silver-seed gourdcarcmoB0684
CmoCh12G000100Silver-seed gourdcarcmoB0855
CmoCh12G000100Cucumber (Chinese Long) v3cmocucB0178
CmoCh12G000100Cucumber (Chinese Long) v3cmocucB0207
CmoCh12G000100Watermelon (97103) v2cmowmbB167
CmoCh12G000100Watermelon (97103) v2cmowmbB181
CmoCh12G000100Wax gourdcmowgoB0192
CmoCh12G000100Wax gourdcmowgoB0216
CmoCh12G000100Cucurbita moschata (Rifu)cmocmoB137
CmoCh12G000100Cucurbita moschata (Rifu)cmocmoB152
CmoCh12G000100Cucumber (Gy14) v1cgycmoB0786
CmoCh12G000100Cucumber (Gy14) v1cgycmoB1085
CmoCh12G000100Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G000100Cucurbita maxima (Rimu)cmacmoB680
CmoCh12G000100Cucurbita maxima (Rimu)cmacmoB766
CmoCh12G000100Wild cucumber (PI 183967)cmocpiB152
CmoCh12G000100Wild cucumber (PI 183967)cmocpiB177
CmoCh12G000100Cucumber (Chinese Long) v2cmocuB151
CmoCh12G000100Cucumber (Chinese Long) v2cmocuB174
CmoCh12G000100Melon (DHL92) v3.5.1cmomeB152
CmoCh12G000100Watermelon (Charleston Gray)cmowcgB150
CmoCh12G000100Watermelon (Charleston Gray)cmowcgB164
CmoCh12G000100Watermelon (97103) v1cmowmB130
CmoCh12G000100Watermelon (97103) v1cmowmB146
CmoCh12G000100Cucurbita pepo (Zucchini)cmocpeB150
CmoCh12G000100Cucurbita pepo (Zucchini)cmocpeB162
CmoCh12G000100Bottle gourd (USVL1VR-Ls)cmolsiB162
CmoCh12G000100Bottle gourd (USVL1VR-Ls)cmolsiB178
CmoCh12G000100Cucumber (Gy14) v2cgybcmoB162
CmoCh12G000100Cucumber (Gy14) v2cgybcmoB564
CmoCh12G000100Melon (DHL92) v3.6.1cmomedB150
CmoCh12G000100Melon (DHL92) v3.6.1cmomedB168