CmoCh11G020610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G020610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNucleolar complex protein 3 like
LocationCmo_Chr11 : 13958402 .. 13959162 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCTTTTTCTTCCCGCCATCTCCTCCTCCGTTTCAGCAGCTCAGTAGCCCGCCGTCTTCTTTCTTCTATGCCGCTGCCCCCTCCCTCTGTAATCTTTAACCACTCGAAGGAGGCTTTCATTCTGTCTTCTCCATGCGGTAGATACGTAATAACGAGAAACAGAAGCTAATTCTACCGCCGGAGTTTCCACCAGAGCTCACCGATGAAGAAGTTGAGGTCTCCGAAGGGGAAGAAGTTGACGTCTCAGAAGGTAATTCTATCTTTTTCTGTTTTTATTTAAGCTATTTTTGTTTCGTTTGTCTTAGTTGCATCATTTGTTAATTACTCTGCTATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGGTTTGTGCTCCTATTTTTATTTATCTTTCCATGAGGTTTTCTGGTGCTTGAAATGGAATGAAGTTACTTAGCAAAGCAATTTCTGAAATAAAGATCAGTTCAAACCATCACAATCCTACCTTGCTTCGATGAAGTTATTTGGTATGCGATTAGATCTTAGTATGATATTATTAGTCTTTCAATTGATGGATTGGGTTTCTAACAATTGATAATTTATGCTTTCACAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG

mRNA sequence

CCTTCTTTTTCTTCCCGCCATCTCCTCCTCCGTTTCAGCAGCTCAGTAGCCCGCCGTCTTCTTTCTTCTATGCCGCTGCCCCCTCCCTCTGTAATCTTTAACCACTCGAAGGAGGCTTTCATTCTGTCTTCTCCATGCGGTAGATACGTAATAACGAGAAACAGAAGCTAATTCTACCGCCGGAGTTTCCACCAGAGCTCACCGATGAAGAAGTTGAGGTCTCCGAAGGGGAAGAAGTTGACGTCTCAGAAGTTGCATCATTTGTTAATTACTCTGCTATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG

Coding sequence (CDS)

ATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG
Homology
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BLAST of CmoCh11G020610 vs. TAIR10
Match: AT1G79150.1 (AT1G79150.1 binding)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 

Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLL 47
           + I  Y IRLPT KELEM++SK V+K R Y STLL AYK  L+ L
Sbjct: 240 DIIPGYRIRLPTEKELEMKISKEVKKTRFYESTLLKAYKSYLQKL 284

The following BLAST results are available for this feature:
BLAST of CmoCh11G020610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G020610 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh11G020610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79150.11.1e-0660.00 binding[more]
BLAST of CmoCh11G020610 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011501Noc3_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G020610.1CmoCh11G020610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011501Nucleolar complex-associated protein 3, N-terminalPFAMPF07540NOC3pcoord: 6..40
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G020610CmaCh11G019730Cucurbita maxima (Rimu)cmacmoB113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G020610Cucumber (Gy14) v2cgybcmoB695
CmoCh11G020610Cucumber (Gy14) v2cgybcmoB878
CmoCh11G020610Melon (DHL92) v3.6.1cmomedB084
CmoCh11G020610Melon (DHL92) v3.6.1cmomedB098
CmoCh11G020610Silver-seed gourdcarcmoB0457
CmoCh11G020610Silver-seed gourdcarcmoB0523
CmoCh11G020610Silver-seed gourdcarcmoB0722
CmoCh11G020610Cucumber (Chinese Long) v3cmocucB0151
CmoCh11G020610Cucumber (Chinese Long) v3cmocucB0156
CmoCh11G020610Watermelon (97103) v2cmowmbB090
CmoCh11G020610Watermelon (97103) v2cmowmbB131
CmoCh11G020610Wax gourdcmowgoB0117
CmoCh11G020610Wax gourdcmowgoB0127
CmoCh11G020610Cucurbita moschata (Rifu)cmocmoB108
CmoCh11G020610Cucurbita moschata (Rifu)cmocmoB114
CmoCh11G020610Cucumber (Gy14) v1cgycmoB0289
CmoCh11G020610Cucumber (Gy14) v1cgycmoB0664
CmoCh11G020610Cucurbita maxima (Rimu)cmacmoB492
CmoCh11G020610Cucurbita maxima (Rimu)cmacmoB539
CmoCh11G020610Wild cucumber (PI 183967)cmocpiB129
CmoCh11G020610Wild cucumber (PI 183967)cmocpiB132
CmoCh11G020610Cucumber (Chinese Long) v2cmocuB129
CmoCh11G020610Cucumber (Chinese Long) v2cmocuB133
CmoCh11G020610Melon (DHL92) v3.5.1cmomeB078
CmoCh11G020610Melon (DHL92) v3.5.1cmomeB092
CmoCh11G020610Watermelon (Charleston Gray)cmowcgB067
CmoCh11G020610Watermelon (Charleston Gray)cmowcgB090
CmoCh11G020610Watermelon (97103) v1cmowmB066
CmoCh11G020610Watermelon (97103) v1cmowmB112
CmoCh11G020610Cucurbita pepo (Zucchini)cmocpeB093
CmoCh11G020610Cucurbita pepo (Zucchini)cmocpeB101
CmoCh11G020610Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G020610Bottle gourd (USVL1VR-Ls)cmolsiB078
CmoCh11G020610Bottle gourd (USVL1VR-Ls)cmolsiB087