CmoCh11G018660 (gene) Cucurbita moschata (Rifu)

NameCmoCh11G018660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein
LocationCmo_Chr11 : 12980621 .. 12981034 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

mRNA sequence

ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

Coding sequence (CDS)

ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA
BLAST of CmoCh11G018660 vs. TrEMBL
Match: A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.6e-56
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

BLAST of CmoCh11G018660 vs. TrEMBL
Match: A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-50
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILD  TIVNFVEDEAAF A I  +FAHLDT+HDGLLS++EML+ELQSLRV +ADFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
            D K  PDELSSVYSS+FLQFDR+S G VDLD +K E KRMMLAMANGIG LPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE AIM
Sbjct: 121 GSFLMKAVERETAIM 135

BLAST of CmoCh11G018660 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.9e-49
Identity = 101/131 (77.10%), Postives = 116/131 (88.55%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDE AF   I DRFAHLDT+HDGLLS++E+LKELQSLRV E  FG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVK DP EL+ VY+S+F+QFD +S+GTVDL EFKAE+KRMMLAMANG+G LPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERE 132
           GSFL KAV+RE
Sbjct: 121 GSFLKKAVDRE 131

BLAST of CmoCh11G018660 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 98/131 (74.81%), Postives = 118/131 (90.08%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIV+FVEDE AF   I +RFAHLDT+HDGLLS++EM++EL+SLRV E  FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           ID KPDP+EL+SVY+S+F+QFD +S+GTVDL+EFKAE K+MMLAMANG+G LPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERE 132
            SFLMKAVE+E
Sbjct: 121 DSFLMKAVEKE 131

BLAST of CmoCh11G018660 vs. TrEMBL
Match: A0A0D2M0N6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G194900 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 99/131 (75.57%), Postives = 113/131 (86.26%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDS TIVNFVEDE AF   I DRFAHLD +HDGLLS+SE+LKELQSLRV+E  FG
Sbjct: 1   MSVELLDSGTIVNFVEDEEAFHVSIRDRFAHLDADHDGLLSYSELLKELQSLRVLETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDV+ DP EL+ VY S+F+QFD +S+GTVDL+EFK+E KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVQTDPKELAHVYKSLFVQFDHDSNGTVDLEEFKSETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERE 132
           GSFL  AVERE
Sbjct: 121 GSFLKIAVERE 131

BLAST of CmoCh11G018660 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.4e-29
Identity = 60/135 (44.44%), Postives = 99/135 (73.33%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           M V ++D +T+ +FV+DE  F   + +RFA LD N DG+LS SE+ K  +S+R++E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVL-- 120
           +DV    DEL+++Y S+F +FD + SG+VDL+EF++E K+++LA+A+G+G+ P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSFLMKAVEREVA 134
           ++ +FL KA + E +
Sbjct: 121 DDDNFLKKAADLEAS 135

BLAST of CmoCh11G018660 vs. NCBI nr
Match: gi|778716395|ref|XP_011657544.1| (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

BLAST of CmoCh11G018660 vs. NCBI nr
Match: gi|659097011|ref|XP_008449396.1| (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 3.2e-55
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVED+ AFGA I DRFAHLDTNHDGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDP+ELSSVYSS+FLQFD +SSGTVDLDEFKAE KRMML MANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

BLAST of CmoCh11G018660 vs. NCBI nr
Match: gi|659110959|ref|XP_008455501.1| (PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 3.0e-53
Identity = 113/135 (83.70%), Postives = 119/135 (88.15%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDS TIVNFVEDEAAF A I DRF HLDTNHDGLLS++EML+ELQSLRV EADFG
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
            D K DPDELSSVYSS+FLQFDR+S G VDLD +K E KRMMLAMANGIG LPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE AIM
Sbjct: 121 GSFLMKAVERETAIM 135

BLAST of CmoCh11G018660 vs. NCBI nr
Match: gi|778723608|ref|XP_011658679.1| (PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 4.0e-50
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILD  TIVNFVEDEAAF A I  +FAHLDT+HDGLLS++EML+ELQSLRV +ADFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
            D K  PDELSSVYSS+FLQFDR+S G VDLD +K E KRMMLAMANGIG LPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE AIM
Sbjct: 121 GSFLMKAVERETAIM 135

BLAST of CmoCh11G018660 vs. NCBI nr
Match: gi|590711914|ref|XP_007049241.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 201.4 bits (511), Expect = 9.9e-49
Identity = 101/131 (77.10%), Postives = 116/131 (88.55%), Query Frame = 1

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDE AF   I DRFAHLDT+HDGLLS++E+LKELQSLRV E  FG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVK DP EL+ VY+S+F+QFD +S+GTVDL EFKAE+KRMMLAMANG+G LPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERE 132
           GSFL KAV+RE
Sbjct: 121 GSFLKKAVDRE 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHT7_CUCSA7.6e-5685.82Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1[more]
A0A0A0K3B2_CUCSA2.8e-5080.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1[more]
A0A061DTS7_THECC6.9e-4977.10Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
V4U9W3_9ROSI3.4e-4874.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1[more]
A0A0D2M0N6_GOSRA2.2e-4775.57Uncharacterized protein OS=Gossypium raimondii GN=B456_001G194900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44310.12.4e-2944.44 Calcium-binding EF-hand family protein[more]
Match NameE-valueIdentityDescription
gi|778716395|ref|XP_011657544.1|1.1e-5585.82PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus][more]
gi|659097011|ref|XP_008449396.1|3.2e-5585.07PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo][more]
gi|659110959|ref|XP_008455501.1|3.0e-5383.70PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo][more]
gi|778723608|ref|XP_011658679.1|4.0e-5080.00PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus][more]
gi|590711914|ref|XP_007049241.1|9.9e-4977.10Calcium-binding EF-hand family protein [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018660.1CmoCh11G018660.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 26..95
score: 2.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 73..101
score: 4.1coord: 24..52
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 20..55
score: 7.986coord: 69..104
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 29..96
score: 3.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 27..96
score: 1.85
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 82..94
score: -coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..135
score: 7.5
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..135
score: 7.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None