CmoCh11G014920 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G014920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionExosome complex component RRP42
LocationCmo_Chr11 : 10566343 .. 10571403 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTAAGATATTCAAGATCTAGACCTGAACTAAGCACCTTCTATACTAGAAGTACTTCGAACTCGGACTCGTCGTGTAACGAGAAAGCAACCATCTTTGTTAGTACTTGACATCATAGGTAATATTTTACCGCTTATATTTTTATTTAATGCAATATTATTAATTATAAAACAAAAGTACTTTAAAAAAAAATTTATAGACTATATAAATTGACAAATAGAAAAAGCCAATATTAATTAATAGCTTTATATTTAAAATAAACTAATAATAAATTAATAAATTAATGTTATTTTGCAATTTAAAATCACAATAATCCTATTATTATCAATAGTTTGCCCACTAATATACTTTTGTAATTTCTTTTAAATATTATTTTAATTTCTTATTTATTTTTAAAAAATTACTTTAATTTTGTATTTTTTTTTACAGTACAGTATTTTTGGAACTTGCCAAAAAAAAAAAAAACAAAACAAAAATAAATGAAAAACCCTAAACCCATTTTTTGCTGGTAGCCCACTCCACTCTTCCTTCTCCGCCATCTCTACCGCGCGCGCCCTCTCCGCCCTCTCCGCCGGAGCTGTTCGTCGGTCACCCTTTCCTTCTCTCTCTTCCTATCACCCTGCAATTTCTGGCCTGCGGGTCGCAGCCCCTGTGTTCTTTTGCCGAGGTCCGCACACCGGCTCGGCGAACACCGAAGGCCTTGTCGCCGACAAAGCACGAGCAGCGCCGCCGTCCCTCGATGTCAGTAACATCTATCTTCTCTTCTTCTTTAATCTCTAGTTTATGCTAAAACCCCAATGTTCCAACTCAACTTTGTCGAAACCTTCGTCTTCTGGGTTTAATTTCCAGCTGGTTTTGTGTGGTTCACCAGAAGTAGGAATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAACTTATCGGCCCATTTCCGTAGAAACGGATGTGATCTCTCAGGTATAATCAAAACAGAGTAGTATATTTATGCCTTCTTTTCTTGTTCTGTTCTTGCTCTTTATGTGGTTTTATTTCTCAATTCACTTATGTTTAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGTATAAATGCGTTGAGCTTCTTTCTCTTTCAATTGTACTCTTCACCAGTTTCTATCCAAAACACTGCAACCGCTCTGTTTTTCGTTTTTGAAACTGTAAACTTGGATTGGTTATGGTGATTACTGCTTAGATATGTTTTAAGTGCAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGTGTGAAACTTGCTTATTTTTACAAATTTGTTCATTCATGTGTGTAGAAATGACAGTAAATTGTTTGTTCCATGCAAAATGGTGTTTCGTTGGAGAAAAAGAGGTTATGCATTAGTGAAAAATGGAATGTTGAGCATCAGGAGCTATAATTTGTATGAAGGTCTTGATATTTAGATTTCCTGACTATGGGCTTGATTTCCATTTGGATTTCCATTGATTAATTTGCTGTCTATTCTTGATTAAATTTTGAAAGTAGTAGGATTTTGATCAATTGGATTAAATAAGAGGCACATTTATCACTAACCAACATAATCTAACAATTGGATATTGCAAACAAATCTACCTTGAAACTTGAAGGATCTTAACCTTATTTTCAATGATAGTATGGTTTTCATTCTTACTTGGATTATGATTAACTAGGTATGATCATTCCTCCAAACTTTAATGATTCATGCGCACAGAAATCATACAAGAAAAAAACCCCATTGAAGGAGTCCTCAATGAATTATAGGAACAGACTCCAATCCCAAAGAATAACCCAAGCTGATAACTGCGAAAAGAATGATTCAAAGATATCTATAACGATGCATTAAATCTCACAACTTTTGACACCTCCTCGACAAACCTCTTGTGCTTTTGAAAATAGTGACAAACAAGCCTGCCACAAGACTCCCCATTGAATAGCAAATGAACAAGCCTGCCCCAGAACTTTTCCTTTATTTTAGAAGTGAGATTTCATCATAATCGCCCTTGACATAGAGTGATAGTCCCTATTACTCATGTAACGGCCCTAAAAAACCAGTCCATAGGGAGTAAGCAAGCTGAAAACCTCTCAAATGCTGATTAAGATCCTCGTCAACATGACGATGGACACACCATTATTGACACAACATTAAGGAAGAATTTCACTTGATGTAATTCTGGGAATTCATTCTACCATGTAAAACTTGCCAAGTAAAGAACTTCACTTTTTAGGGATTTTCACCTTTCTGGAAAGGGAAAAAGGAGGCCCCTGATTGGACGAAGAGGAACAAAGAGTGATGGGAAAAGACTAATACATTAAGTCTTTAGACATATTAAGAGCCCAAACCCTATGGATAGGAGAATAGTGTAAAAAATCCCACTACCTCCAAAGACTTGTGATTAGTGAGAAGAGAAAACCCAGTGACAGTGAAGAGGATGAATTAGAGATCGACAAGATAGAGGCCACTGAGTGTAACCTCTTGTCAGAAAAATAATAAATGTGAATAAATAGATCACAAAGAGGCTTAACACCCACCCACGAATCCTCTCCAAAAATAAGTAACTATAGTCATCAAAAGCCTTTTACTAGAGTCTTTTAACCCACTACTTGTTCATTTTAAGTTGAAAACCAATTTCTTTCTTTTAAGGGAAACATATTAGCAAAGGTAGTATAAGTGCATAGTTCTAACATTTAATCAAAGATGAATGAACAAATTAAATAATGGAAAAGAGTTAGGGGATACAATAGATGTTAAATAAATGTTTTAAGTGCTAAAACAATAATCTAACAGAAAAGCTATTATAAACGTTTGTAATTTACTATAGAAATCGTTAAACAACTGAACTGGTATCCATGTGCATCACATCAACTTGTGTAGTTTCTTTTCCATATGTGCCTTTGGTGTGCTTGTAATAATTTGGTTTTTCACCGAATATAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCGGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGTTTGACTCATGACTAAAAAAGTAGATTGATAGTATTCACTGTTATGAATCACAAATCTCCACAATGGTCTGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCGTTCCCTAAATTAGCCAATGTGGGACTCACTCCCAATAATCTTCAACAATCCTCCCCTCGAACAAAGTACACTACAAGCCTCTCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATCGAGGCTTGACTCCTTTCTCTGGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACTTTAGTCACTTTTGACTAAACCTTCGAGGCTCACAATTCTTTGTTCGATATTTGAGGATTCTATCGACATGGCTAAGTTTAGAGTATGGCTCTGATACCATGTTATGAATCACGAATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTGCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCGTTCCCTAAATTATCCAATGTGGGACTCACTCCCAATAATCTTCAACATTCACTTCCCTTGTTTTGATCAAGAACTTTTGCCCTTGATTAACAATCGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGTACATTTTGATTCTTGAATGTTGTCTACTCTTCTATGTCTGATGTGTTTACTTAAATAACCAGGTTTTGTACTTATTGTTTATACTAGGCTGCATGACCATATAAGCTTTGCTAGTTTGACCAAAGCAATGTACAACAAACATCAGTATCATGTCCGTGTATGGTCTCTGCTTATATCTGTCATTATTTCTGATTGAGCAAGTCACATTTTGCAACTGAAGTCCCTTGAGCCTATATTTTTCTCTTTCGGTTTCGAGATCTACAATAATTTCCTCTTATTTAGGACTCTACCGAACGACTTGAACCCTTCATATTTTAGTAGATCTTTTAATAATCACGGTTGCTATCAAGAATATCTTGCTGGTAGTTAAAGCTGAAACTAACAAAACCCTCATCCTCTTCGCAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGTAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGAGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGATAAAGCTTTTAAGGTCAGATCTCTGAAACTCTTGTTCATTTACATTGTAGAATCTTGGAACGAGTATCTGAGTTAGAATTCTAGTGTAGATGATATAGATGATTGTAAGGCAGTGATCTTGTAAAATTAGCAGGTCTTTTAGTCCTTTGATTCTGTCATGGTATTTGATCCCAGTTTAGTTGTGTCTGAAATGATAAAATGAAGGGCAGATGTTGAATCACTTGCAATTGTGGCTAGATCTTATTAATTTTAGACAACTTTATCTTCATTTGTAGTTTTTAGT

mRNA sequence

ATGAGTTTAAGATATTCAAGATCTAGACCTGAACTAAGCACCTTCTATACTAGAAGTACTTCGAACTCGGACTCGTCGTGTAACGAGAAAGCAACCATCTTTCCCACTCCACTCTTCCTTCTCCGCCATCTCTACCGCGCGCGCCCTCTCCGCCCTCTCCGCCGGAGCTGTTCGTCGGTCACCCTTTCCTTCTCTCTCTTCCTATCACCCTGCAATTTCTGGCCTGCGGGTCGCAGCCCCTGTGTTCTTTTGCCGAGGTCCGCACACCGGCTCGGCGAACACCGAAGGCCTTGTCGCCGACAAAGCACGAGCAGCGCCGCCGTCCCTCGATAAGTAGGAATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAACTTATCGGCCCATTTCCGTAGAAACGGATGTGATCTCTCAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCGGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGTAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGAGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGATAAAGCTTTTAAGGTCAGATCTCTGAAACTCTTGTTCATTTACATTGTAGAATCTTGGAACGAGTATCTGAGTTAGAATTCTAGTGTAGATGATATAGATGATTGTAAGGCAGTGATCTTGTAAAATTAGCAGGTCTTTTAGTCCTTTGATTCTGTCATGGTATTTGATCCCAGTTTAGTTGTGTCTGAAATGATAAAATGAAGGGCAGATGTTGAATCACTTGCAATTGTGGCTAGATCTTATTAATTTTAGACAACTTTATCTTCATTTGTAGTTTTTAGT

Coding sequence (CDS)

ATGAAGGGGCTTTCGGTTGGAGAAAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACCGATGGTCGAAGGAGACTAACTTATCGGCCCATTTCCGTAGAAACGGATGTGATCTCTCAGGCGAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAGGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCAATGCAGCCTGATAAAGGGAAGGTTTCCATATTTGTTGATTGCAGCCCGACTGCAGAGCCAACGTTTGAGGGTAGGGGTGGTGAAGAGTTGGCAACAGAACTCTCGGTTGCCCTTGAGCGATGCCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTTGTAAGCTCAGACGGCAATCTTCTAGATGCCCTTGGTGCTGCGATTAAGGCTGCTTTGAGCAATACAGGCATACCAAAAGTCAATGTTTCTGTAGAAGCGTCCGCCAATGAACAACCCGAAGTTGACGTAAGCGATGAAGAATTTCTACAGTTTGACACATCTGGAGTTCCGGTCATAGTTACATTGACAAAGGTGGGTAGGCACTACATTGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCAATCTCCATATCCGTCAACAGGCACGGTCATGTCTGTGGATTGACCAAACGAGGGGGTGCTGGGGTCGATCCAAGCGTAATCCTTGACATGATTTCCGTGGGCAAACATGTGAGCGAGCAATTACTAAACAAGTTGGATTCGGAGATAGCTGCTGCTGAAGCTGATGAAGAAGAATGA
Homology
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BLAST of CmoCh11G014920 vs. Swiss-Prot
Match: EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 207.2 bits (526), Expect = 2.3e-52
Identity = 112/279 (40.14%), Postives = 169/279 (60.57%), Query Frame = 1 

Query: 4   LSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VKAE
Sbjct: 6   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65

Query: 64  LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 123
           +G P   +P++G +  FVDCS +A P FEGRGG++L TE++  L R +   KS     +D
Sbjct: 66  MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SVD 125

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQP 183
           L +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +   ++  
Sbjct: 126 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI 185

Query: 184 EVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLT 243
           E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +SV   G V  + 
Sbjct: 186 ELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR 245

Query: 244 KRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 246 KVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

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BLAST of CmoCh11G014920 vs. Swiss-Prot
Match: EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 9.9e-51
Identity = 112/279 (40.14%), Postives = 166/279 (59.50%), Query Frame = 1 

Query: 4   LSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VKAE
Sbjct: 6   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65

Query: 64  LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 123
           +G P   +P++G +  FVDCS  A P FEGRGG++L TE++  L R +   KS     +D
Sbjct: 66  MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SVD 125

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQP 183
           L SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +    +  
Sbjct: 126 LRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDI 185

Query: 184 EVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLT 243
           E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +SV   G V  + 
Sbjct: 186 ELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMR 245

Query: 244 KRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           K G   +DP  I +M+   K V + L   L S +   E+
Sbjct: 246 KVGKGSLDPESIFEMMESSKRVGKVLHVSLQSLLHKEES 279

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BLAST of CmoCh11G014920 vs. Swiss-Prot
Match: EXOS7_DICDI (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 117/325 (36.00%), Postives = 170/325 (52.31%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M+ +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNAMQPDKGKVSIF-VDCSPTAEPTFEGRGGEELATELSVALERCLLG 120
           KAE+         N  Q D  K  +F V+C P+A P FEG+G E L  ELS  LER  L 
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLER--LY 120

Query: 121 GKSGAGAGIDLSSLIV-------------VEGKLCW------------------------ 180
                   + L++ I+              EGK                           
Sbjct: 121 SHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYW 180

Query: 181 DLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQPEV--DVSD--EEF 240
            LY++ +V+ SDGNL DAL  A ++AL NT IP+    V+A   E  E+  +VSD  E+ 
Sbjct: 181 TLYVDAIVLDSDGNLFDALSIACRSALQNTRIPR----VKAIQGEYEEITFEVSDDPEDT 240

Query: 241 LQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDP 278
           L      VP+ VTLTK+G  +++D TL+EE  M++ +++ VN   ++C + K G  G+DP
Sbjct: 241 LSLSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDP 300

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BLAST of CmoCh11G014920 vs. Swiss-Prot
Match: RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-33
Identity = 86/257 (33.46%), Postives = 134/257 (52.14%), Query Frame = 1 

Query: 21  RTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIF 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P    P+ G +   
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A PTFE    +E + ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQPEVDVSDEEFLQFDTSGV 200
           +  ++  DGNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVILDMIS 260
            ++ T  K+G   ++D +LEEE  +++ ISI V   G +C + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEQLLNKLDSEI 278
           +      QL+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]
BLAST of CmoCh11G014920 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.1e-33
Identity = 90/258 (34.88%), Postives = 141/258 (54.65%), Query Frame = 1 

Query: 21  RTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKVSIF 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP    P++G +++ 
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A+P+FE    +E A ELS  ++R +   +      IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEEGEHCWVTFV 142

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQPEVDVSDEEFLQFDTSGV 200
           +  V+  DGNL DA      +ALS T +PK  V          EV+V +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEV-------VDDEVEVMEEDTEPLAINDF 202

Query: 201 PVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGLTKRGGAGVDPSVIL-DMI 260
           P+ VT+ KVG + +VD  LEEE  M + ++++V   G VC + K G  G  P  +L D I
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAI 262

Query: 261 SVGKHVSEQLLNKLDSEI 278
            +    +E++   + +++
Sbjct: 263 DLATKKAEEVRRTVKAQL 267

[Close]
BLAST of CmoCh11G014920 vs. TrEMBL
Match: A0A0A0LU91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 4.2e-141
Identity = 259/286 (90.56%), Postives = 273/286 (95.45%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+ EA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of CmoCh11G014920 vs. TrEMBL
Match: A0A151RLB1_CAJCA (Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 2.7e-132
Identity = 240/285 (84.21%), Postives = 267/285 (93.68%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLSVGE+ FIQGGIAQDLR DGR+RLTYRPISVET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           K ELG+P+ +QPDKGKVSI++DCS TAEP FEGRGG+ELA ELS+AL+RCLLGGKSGAGA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSSDGNLLDALGAAIKAALSNTGIP+V V+   S +
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPVIVTLTKVGRHYIVDAT EEESQMSSA+SISVNRHGH+C
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEE 286
           G+TKRGGAG+DPS+ILDMISV KHVSEQ++NKLDSEIA+AEA+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

[Close]
BLAST of CmoCh11G014920 vs. TrEMBL
Match: A0A061FPE8_THECC (3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 1.0e-131
Identity = 237/286 (82.87%), Postives = 271/286 (94.76%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLSVGEK FIQGGIAQDLR+DGR+RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELG+P+A+QPDKGK++I+VDCSPTA P FEGRGGEEL+TELSVAL+RCLLGGKSG+G+
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGSGS 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GID SSL++VEGK+CWDLYI+GLV+SSDGNLLDALGAAIKAALSNTGIPKVNV+ E S +
Sbjct: 121 GIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEV++SDEEFLQFDTSG+PVIVTLTKVGRHYIVDAT EEESQ+SSAISIS+NR GH+C
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAG+DPS+ILDMISV KHVSEQL+NKLDSEIAAAEA+EEE
Sbjct: 241 GLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

[Close]
BLAST of CmoCh11G014920 vs. TrEMBL
Match: A0A059BFR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 3.0e-131
Identity = 239/286 (83.57%), Postives = 270/286 (94.41%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEKLF+QGGIAQDLR+DGR+RLTYRPI VET VI QANGSARVRMGGT+VIA+V
Sbjct: 1   MNGLSLGEKLFVQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGGTDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAE+GRP+ +QP+KGKVSI+VDCSPTA P FEGRG EEL+TELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAEIGRPSPLQPNKGKVSIYVDCSPTAAPVFEGRGAEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSSDGNLLDALGAAIKAALSNTGIP+V+V+ EAS  
Sbjct: 121 GIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVHVAAEASGE 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           +QPE+D+SDEEFLQFDTSGVPVIVTLTKVGRHYIVDATL+EES+MSSA+S+S+NR G +C
Sbjct: 181 DQPELDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLDEESEMSSALSVSINRKGLIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAG+DPSVILDMISV KHVSEQL ++LDSEI+AAEA EEE
Sbjct: 241 GLTKRGGAGLDPSVILDMISVAKHVSEQLTDRLDSEISAAEAVEEE 286

[Close]
BLAST of CmoCh11G014920 vs. TrEMBL
Match: A0A0B0PWL1_GOSAR (Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 3.9e-131
Identity = 238/286 (83.22%), Postives = 269/286 (94.06%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLSVGEK FIQGGIAQDLR+DGR+RLTYRPI VET VI QA+GSARVR+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARVRLGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELG+P+A+QPDKGK++I+VDCSPTA P FEGRGGEEL+TELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GID +SL+VVEGK+CWDLYI+GLV+SSDGNLLDAL AAIKAALSNTGIPKV+V+VE  ++
Sbjct: 121 GIDPTSLVVVEGKVCWDLYIDGLVISSDGNLLDALAAAIKAALSNTGIPKVDVAVETRSD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEV++SDEEFLQFDTSG+PVIVTLTKVGRHYIVDAT EEESQMSSA+SISVNR GH+C
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG G+DPS+ILDMISV KHVSEQL+NKLDSEIAAAEA EEE
Sbjct: 241 GLTKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEASEEE 286

[Close]
BLAST of CmoCh11G014920 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 458.4 bits (1178), Expect = 3.3e-129
Identity = 226/284 (79.58%), Postives = 266/284 (93.66%), Query Frame = 1 

Query: 3   GLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKA 62
           GLS+GE+ FI+GGIAQDLRTDGR+RLTYRPI VET VI QANGSARVR+GGT+VIA+VKA
Sbjct: 2   GLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKA 61

Query: 63  ELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGI 122
           E+GRP+++QPDKGKV++F+DCSPTAEPTF GRGGEEL++EL++AL+RCLLGGKSGAGAGI
Sbjct: 62  EIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGI 121

Query: 123 DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQ 182
           +LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKVNVS E + +EQ
Sbjct: 122 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 181

Query: 183 PEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCGL 242
           PE+D+SDEE+LQFDTS VPVIVTLTKVG HYIVDAT EEESQMSSA+SISVNR GH+CGL
Sbjct: 182 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 241

Query: 243 TKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           TKR G+G+DPSVILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 242 TKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]
BLAST of CmoCh11G014920 vs. TAIR10
Match: AT3G12990.1 (AT3G12990.1 ribonuclease PH45A)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 84/258 (32.56%), Postives = 134/258 (51.94%), Query Frame = 1 

Query: 4   LSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+V E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SIF + SP A+P+FE     E A EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDVSDEEFLQFDTSGVPVIVT--LTKVGRHYIVDATLEEESQMSSAISISVNRHGH 243
             PE    + E L      +P+  T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSVIL 257
           +C + K G  GV+ SVIL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]
BLAST of CmoCh11G014920 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-28
Identity = 86/279 (30.82%), Postives = 143/279 (51.25%), Query Frame = 1 

Query: 4   LSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+V E  F++  +  +LR DGR    YR ++++     +  GS+ V++G T V+  V A+
Sbjct: 11  LTVNESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQ 70

Query: 64  LGRPNAMQPDKGKVSIFVDCSPTAEPTFE-GRGGEELATELSVALERCLLGGKSGAGAGI 123
           L +P   +P++G +SIF + SP A+P+FE GR GE  A EL   ++R L   ++     +
Sbjct: 71  LVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDRGLRESRA-----V 130

Query: 124 DLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQ 183
           D  SL V+ GK+ W + I+  ++ + GNL+DA   A  AAL     P   V  E +  E 
Sbjct: 131 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGE-NGQEV 190

Query: 184 PEVDVSDEEFLQFDTSGVPVIVT--LTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 243
               + + E L      +P+  T      G   ++D T  EE+ M   ++++VN +G +C
Sbjct: 191 IIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 250

Query: 244 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAA 280
            + K G  GV+ SVIL  + +    +      +  E+ A
Sbjct: 251 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEA 279

[Close]
BLAST of CmoCh11G014920 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-20
Identity = 70/251 (27.89%), Postives = 115/251 (45.82%), Query Frame = 1 

Query: 11  FIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAM 70
           F +  +++ LR DGR+    R   V   ++S A+GSA  ++G T ++A ++ E+  P+  
Sbjct: 27  FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86

Query: 71  QPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAGIDLSSLIVV 130
            PD+G ++I     P   PT       E A  +S  L   +L     +   IDL  L +V
Sbjct: 87  SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTIL-----SSGMIDLKELCLV 146

Query: 131 EGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV----NVSVEASANEQ---- 190
            GK  W  Y++   + +DG L DA   A  AA SN  IP V    N  + A   E+    
Sbjct: 147 SGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDN 206

Query: 191 ---PEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHV 250
               E +  ++E  +     +P  +T      + + D T EEES M + +++ ++    +
Sbjct: 207 ALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQM 266

[Close]
BLAST of CmoCh11G014920 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 52/195 (26.67%), Postives = 84/195 (43.08%), Query Frame = 1 

Query: 18  QDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNAMQPDKGKV 77
           + LR DGRR    R I  E  V+S+A+GSA   MG T+VIA V       N  Q  K   
Sbjct: 7   EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66

Query: 78  SIFVDCSPTAEPTFEG--------RGGEELATELSVALERCLLGGKSGAGAGIDLSSLIV 137
           ++ V C  +      G        R   EL+  +   +E C+L             + ++
Sbjct: 67  AV-VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACIL-------------TELM 126

Query: 138 VEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANEQPEVDVSD 197
              ++  D++++  V+ +DG    A   A   AL++ GIP  +++V  SA       + D
Sbjct: 127 PHSQI--DIFLQ--VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLD 183

Query: 198 EEFLQFDTSGVPVIV 205
             +++    G  V V
Sbjct: 187 LNYVEDSAGGADVTV 183

[Close]
BLAST of CmoCh11G014920 vs. NCBI nr
Match: gi|778655595|ref|XP_004151651.2| (PREDICTED: exosome complex component RRP42 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 6.0e-141
Identity = 259/286 (90.56%), Postives = 273/286 (95.45%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+ EA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of CmoCh11G014920 vs. NCBI nr
Match: gi|659081317|ref|XP_008441268.1| (PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 498.4 bits (1282), Expect = 8.1e-138
Identity = 252/286 (88.11%), Postives = 271/286 (94.76%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELGRPN MQ +KGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKV+++ EAS N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEVDVSDEEF+QF+TSGVP IVTLTKVG+HYI+DATLEEESQMSSA+SIS+NRHGH+C
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGK+VSE+LLNKLDSEI AAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of CmoCh11G014920 vs. NCBI nr
Match: gi|1012331905|gb|KYP43357.1| (Exosome complex exonuclease RRP42 [Cajanus cajan])

HSP 1 Score: 479.6 bits (1233), Expect = 3.9e-132
Identity = 240/285 (84.21%), Postives = 267/285 (93.68%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLSVGE+ FIQGGIAQDLR DGR+RLTYRPISVET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           K ELG+P+ +QPDKGKVSI++DCS TAEP FEGRGG+ELA ELS+AL+RCLLGGKSGAGA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSSDGNLLDALGAAIKAALSNTGIP+V V+   S +
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPVIVTLTKVGRHYIVDAT EEESQMSSA+SISVNRHGH+C
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEE 286
           G+TKRGGAG+DPS+ILDMISV KHVSEQ++NKLDSEIA+AEA+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

[Close]
BLAST of CmoCh11G014920 vs. NCBI nr
Match: gi|1009164949|ref|XP_015900774.1| (PREDICTED: exosome complex component RRP42 [Ziziphus jujuba])

HSP 1 Score: 478.0 bits (1229), Expect = 1.1e-131
Identity = 242/286 (84.62%), Postives = 267/286 (93.36%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEK FIQGGIAQDLR+DGR+RLTYRPI VET VI QANGSARVR+G T+VIA+V
Sbjct: 1   MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELG+P+ +QPDKGKV+I+VDCSPTA P FEGRGGEEL+ ELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGKPHPLQPDKGKVAIYVDCSPTAAPIFEGRGGEELSMELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GI LSSL+VVEGK+CWDLYI+GLVVSSDGNLLDALGAAIKAALSNTGIP+VNV+  AS +
Sbjct: 121 GISLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           E+PEVDVSDEEFLQFDTSGVPVI+TLTKVGRHYIVDAT EEESQMSSA+SISVNR GH+C
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATTEEESQMSSAVSISVNRQGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISV KHVSEQLLN+LDSEIAAAEA E E
Sbjct: 241 GLTKRGGAGVDPSIILDMISVAKHVSEQLLNQLDSEIAAAEARENE 286

[Close]
BLAST of CmoCh11G014920 vs. NCBI nr
Match: gi|590565438|ref|XP_007009948.1| (3'-5'-exoribonuclease family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 477.6 bits (1228), Expect = 1.5e-131
Identity = 237/286 (82.87%), Postives = 271/286 (94.76%), Query Frame = 1 

Query: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLSVGEK FIQGGIAQDLR+DGR+RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120
           KAELG+P+A+QPDKGK++I+VDCSPTA P FEGRGGEEL+TELSVAL+RCLLGGKSG+G+
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGSGS 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180
           GID SSL++VEGK+CWDLYI+GLV+SSDGNLLDALGAAIKAALSNTGIPKVNV+ E S +
Sbjct: 121 GIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240
           EQPEV++SDEEFLQFDTSG+PVIVTLTKVGRHYIVDAT EEESQ+SSAISIS+NR GH+C
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHIC 240

Query: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAG+DPS+ILDMISV KHVSEQL+NKLDSEIAAAEA+EEE
Sbjct: 241 GLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

The following BLAST results are available for this feature:
BLAST of CmoCh11G014920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXOS7_HUMAN2.3e-5240.14Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3[more]
EXOS7_MOUSE9.9e-5140.14Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2[more]
EXOS7_DICDI1.4e-4136.00Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7... [more]
RRP42_METTH1.1e-3333.46Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai... [more]
RRP42_METKA7.1e-3334.88Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of CmoCh11G014920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU91_CUCSA4.2e-14190.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004330 PE=4 SV=1[more]
A0A151RLB1_CAJCA2.7e-13284.21Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1[more]
A0A061FPE8_THECC1.0e-13182.873'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 ... [more]
A0A059BFR0_EUCGR3.0e-13183.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1[more]
A0A0B0PWL1_GOSAR3.9e-13183.22Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1[more]
BLAST of CmoCh11G014920 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07750.13.3e-12979.58 3'-5'-exoribonuclease family protein[more]
AT3G12990.11.1e-2832.56 ribonuclease PH45A[more]
AT3G60500.14.3e-2830.82 3'-5'-exoribonuclease family protein[more]
AT1G60080.19.6e-2027.89 3'-5'-exoribonuclease family protein[more]
AT3G61620.11.6e-0626.67 3'-5'-exoribonuclease family protein[more]
BLAST of CmoCh11G014920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778655595|ref|XP_004151651.2|6.0e-14190.56PREDICTED: exosome complex component RRP42 [Cucumis sativus][more]
gi|659081317|ref|XP_008441268.1|8.1e-13888.11PREDICTED: exosome complex component RRP42-like [Cucumis melo][more]
gi|1012331905|gb|KYP43357.1|3.9e-13284.21Exosome complex exonuclease RRP42 [Cajanus cajan][more]
gi|1009164949|ref|XP_015900774.1|1.1e-13184.62PREDICTED: exosome complex component RRP42 [Ziziphus jujuba][more]
gi|590565438|ref|XP_007009948.1|1.5e-13182.873'-5'-exoribonuclease family protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
IPR027408PNPase/RNase_PH_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G014920.1CmoCh11G014920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 30..169
score: 5.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 200..263
score: 1.7
IPR015847Exoribonuclease, phosphorolytic domain 2unknownSSF55666Ribonuclease PH domain 2-likecoord: 196..281
score: 4.25
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 209..223
score: 3.59E-45coord: 4..174
score: 3.59
IPR027408PNPase/RNase PH domainGENE3DG3DSA:3.30.230.70coord: 13..278
score: 6.9
NoneNo IPR availableunknownCoilCoilcoord: 263..283
scor
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..286
score: 1.4E
NoneNo IPR availablePANTHERPTHR11097:SF8EXOSOME COMPLEX COMPONENT RRP42coord: 1..286
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G014920CmaCh11G016410Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G014920Cp4.1LG04g06980Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G014920Carg23981Silver-seed gourdcarcmoB1000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G014920Watermelon (97103) v2cmowmbB136
CmoCh11G014920Wax gourdcmowgoB0118
CmoCh11G014920Cucurbita moschata (Rifu)cmocmoB109
CmoCh11G014920Cucumber (Gy14) v1cgycmoB0624
CmoCh11G014920Cucurbita maxima (Rimu)cmacmoB493
CmoCh11G014920Wild cucumber (PI 183967)cmocpiB137
CmoCh11G014920Cucumber (Chinese Long) v2cmocuB138
CmoCh11G014920Melon (DHL92) v3.5.1cmomeB085
CmoCh11G014920Melon (DHL92) v3.5.1cmomeB134
CmoCh11G014920Watermelon (Charleston Gray)cmowcgB072
CmoCh11G014920Cucurbita pepo (Zucchini)cmocpeB094
CmoCh11G014920Bottle gourd (USVL1VR-Ls)cmolsiB104
CmoCh11G014920Cucumber (Gy14) v2cgybcmoB881
CmoCh11G014920Melon (DHL92) v3.6.1cmomedB091
CmoCh11G014920Cucumber (Chinese Long) v3cmocucB0160