CmoCh11G014740 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G014740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 10367744 .. 10368071 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGGTTCCCGAAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

mRNA sequence

ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

Coding sequence (CDS)

ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

Homology

[Close]

BLAST of CmoCh11G014740 vs. TrEMBL
Match: M5VM97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018043mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 59/132 (44.70%), Postives = 74/132 (56.06%), Query Frame = 1


Query: 2   PLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLE---KPKIPELSKPELPKLPQLPKLEY 61
           PLP  P  L KPE+P L KPE+P L K  LP L    KP++P+L KPELP+LP+ P+L +
Sbjct: 27  PLPTFPT-LPKPELPQLPKPELPQLPKPELPELPQLPKPELPQLPKPELPQLPK-PELPH 86

Query: 62  QNCPTCL------------------KPELPKLPELTPLPK----------PVLPTLPNDI 103
            +CP+C                   KPELPKLPE+  LP           P +PTLP D 
Sbjct: 87  LSCPSCRSQNCQPELPPLPNFPTLPKPELPKLPEIPTLPHLPADLPKPTLPSIPTLPKDT 146

[Close]

BLAST of CmoCh11G014740 vs. TrEMBL
Match: A0A059BAT7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00966 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 1


Query: 3   LPKVPE----ELSK-PEIPSLSKPEVPPLSKVLLPPLE---KPKIPELSKPELPKLPQLP 62
           LP+VPE    EL + P+IPSL KPE+P L KV LPPL    KP+ P + KPELP++P+LP
Sbjct: 37  LPEVPELPKPELPQLPDIPSLPKPELPSLPKVELPPLPELPKPEFPTIPKPELPEVPKLP 96

Query: 63  KLEYQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNP 98
           KLE+   PT  KPE+P+LP L   PKP LP +  D  I + +P
Sbjct: 97  KLEF---PTLPKPEVPELPHLPDFPKPTLPAVSKDTSIAATSP 136

[Close]

BLAST of CmoCh11G014740 vs. TrEMBL
Match: M5VLD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 1


Query: 1   MPLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPE------LPKLPQLP 60
           +P P++P  L KPE+P+L KPE+P L K  LPP+  P +P L KPE       P +P+LP
Sbjct: 43  LPKPELPT-LPKPELPTLPKPELPTLPKPKLPPV--PHVPTLPKPEGLKLAEEPHVPELP 102

Query: 61  KLEYQ---NCPTCLKPELPKLPELTPLPK----------PVLPTLPNDIPIPSFNPPHTS 103
           K E     N PT  KPELPKLPE+ PLP           P +PTLP D P PS  PPH +
Sbjct: 103 KPELPPRPNFPTLPKPELPKLPEIPPLPHLPADLPKPTLPSIPTLPKDTPGPSLIPPHKT 160

[Close]

BLAST of CmoCh11G014740 vs. TrEMBL
Match: Q940G9_ARATH (Periaxin-like protein OS=Arabidopsis thaliana GN=At5g09530/F17I14_280 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 4   PKVPE----ELSK-PEIPSLSKPEVPPLSKVLLPPL-EKPKIPELSKPELPKLPQLPKLE 63
           PKVPE    EL K PE+P L  P+VP + K  LP + E PK+PE+ KPELPKLP++PKLE
Sbjct: 189 PKVPEIPKPELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLE 248

Query: 64  YQNCPTCLKPELPKLPELTPLP---KPVLPTLP 88
               P   KPELPK+PEL  +P   KP LP +P
Sbjct: 249 APKVPEIQKPELPKMPELPKMPEIQKPELPKMP 281

[Close]

BLAST of CmoCh11G014740 vs. TrEMBL
Match: Q9LXB8_ARATH (Hydroxyproline-rich glycoprotein family protein OS=Arabidopsis thaliana GN=F17I14_280 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 4   PKVPE----ELSK-PEIPSLSKPEVPPLSKVLLPPL-EKPKIPELSKPELPKLPQLPKLE 63
           PKVPE    EL K PE+P L  P+VP + K  LP + E PK+PE+ KPELPKLP++PKLE
Sbjct: 189 PKVPEIPKPELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLE 248

Query: 64  YQNCPTCLKPELPKLPELTPLP---KPVLPTLP 88
               P   KPELPK+PEL  +P   KP LP +P
Sbjct: 249 APKVPEIQKPELPKMPELPKMPEIQKPELPKMP 281

[Close]

BLAST of CmoCh11G014740 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-14
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 4   PKVPE----ELSK-PEIPSLSKPEVPPLSKVLLPPL-EKPKIPELSKPELPKLPQLPKLE 63
           PKVPE    EL K PE+P L  P+VP + K  LP + E PK+PE+ KPELPKLP++PKLE
Sbjct: 189 PKVPEIPKPELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLE 248

Query: 64  YQNCPTCLKPELPKLPELTPLP---KPVLPTLP 88
               P   KPELPK+PEL  +P   KP LP +P
Sbjct: 249 APKVPEIQKPELPKMPELPKMPEIQKPELPKMP 281

[Close]

BLAST of CmoCh11G014740 vs. TAIR10
Match: AT5G09520.1 (AT5G09520.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-08
Identity = 33/67 (49.25%), Postives = 38/67 (56.72%), Query Frame = 1


Query: 32  PPLEKPKIPELSKPELPKLPQLPKLEYQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIP 91
           P  E P  PEL KPE+PKLP+ PKLE    P   KPE+PKLPE+     P  P LP    
Sbjct: 39  PKPEIPTFPELPKPEMPKLPEFPKLELPKLPEIPKPEMPKLPEIQKPELPTFPELPKMPE 98

Query: 92  IPSFNPP 99
            P F+ P
Sbjct: 99  FPKFDFP 105

[Close]

BLAST of CmoCh11G014740 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 80/159 (50.31%), Postives = 88/159 (55.35%), Query Frame = 1


Query: 2   PLPKVPEELSKPEIPSLSKPEVPPLSKV------LLPPLEKPKIPELSKPELPKLPQLPK 61
           PLP VPEEL KPEIP+L KPE+PPL KV       LPPLEKPK+PEL KPELPKLP+LPK
Sbjct: 39  PLPHVPEELPKPEIPTLPKPELPPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPK 98

Query: 62  L-----------------------------------EYQNCPTCLKPEL----------- 106
           +                                   +    P+  KPEL           
Sbjct: 99  VPNFDHSKVPEVPTIPKFDLPKLAEVSDHLPKPELPKLPELPSVPKPELPKLPELPNIPK 158

[Close]

BLAST of CmoCh11G014740 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 76/172 (44.19%), Postives = 89/172 (51.74%), Query Frame = 1


Query: 2   PLPKVPEELSKPEIPSLSKPEVPPLSKV------LLPPLEKPKIPELSKPELPKLPQLPK 61
           PLPKVPEEL K EIP+L+KPE+PPL K        LPPLEKPK+PELSKPELPKLP+LPK
Sbjct: 40  PLPKVPEELPKLEIPTLAKPELPPLPKFELPPLPHLPPLEKPKLPELSKPELPKLPELPK 99

Query: 62  L------EYQNCPTCLKPELPKL------------------------------------- 106
           +      +    P+  K +LPKL                                     
Sbjct: 100 VPNLDLSKIPQVPSVPKFDLPKLSEVSNPPQSELPKSPELSNGLKPELPKLPELPNVPKP 159

[Close]

BLAST of CmoCh11G014740 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 74/159 (46.54%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 2   PLPKVPEELSKPEIPSLSKPEVPPLSKV------LLPPLEKPKIPELSKPELPKLPQLPK 61
           P+P  PE L KPEIP+L K E+PPL KV       LPPLEKPK+PEL KPELPKLP+LPK
Sbjct: 40  PIPHGPEGLPKPEIPTLPKSELPPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPK 99

Query: 62  L------EYQNCPTC-------------------------------------------LK 106
           +      +    PT                                             K
Sbjct: 100 VPNFDHSKVPEIPTMPKFDLPKLAEVPDHLPKPELPKLPELPNLPKPELPKLPELPNIPK 159

[Close]

BLAST of CmoCh11G014740 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 70/144 (48.61%), Postives = 81/144 (56.25%), Query Frame = 1


Query: 2   PLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPL------EKPKIPELSKPELPK------ 61
           PLPKVPEEL KPE+P+L KP++PPL K  LPPL      EKPK+PEL K ELPK      
Sbjct: 39  PLPKVPEELPKPEMPTLPKPQLPPLPKFELPPLPHLPPLEKPKLPELPKYELPKFPELPK 98

Query: 62  -----------LPQLPKLEYQ-----------------NCPTCLKPELPKLPELTPLPKP 106
                      +P LPK +                     P   KPELPKLPEL  LPKP
Sbjct: 99  VPSFDLSKIPEVPSLPKFDISKLPEVSNPPKSELPKLPELPNVPKPELPKLPELPLLPKP 158

[Close]

BLAST of CmoCh11G014740 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-15
Identity = 64/136 (47.06%), Postives = 73/136 (53.68%), Query Frame = 1


Query: 6   VPEELSKPEIPSLSKPEVPPLSKVLL------PPLEKPKIPELSK-------------PE 65
           +PEEL KPEIPSL   E PPL KV L      PPLEKPK+PEL K             P+
Sbjct: 40  LPEELPKPEIPSLPNLEFPPLPKVELPPLPHLPPLEKPKLPELPKVPNLDHSKDSSNVPK 99

Query: 66  LPKLPQLPKLEYQNCPTCL-----------------KPELPKLPELTPLPKPVLPTLPND 106
           L ++ +LPK E+   P                    KPELPKLPE  PLPKP   +LP D
Sbjct: 100 LSEVSELPKPEFPKFPELPNFPKPEVPKLPELPNVPKPELPKLPEFPPLPKPAFASLPKD 159

The following BLAST results are available for this feature:

BLAST of CmoCh11G014740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G014740 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VM97_PRUPE	3.9e-12	44.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018043mg PE=4 SV=1	[more]
A0A059BAT7_EUCGR	1.5e-11	52.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00966 PE=4 SV=1	[more]
M5VLD6_PRUPE	2.0e-11	47.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1	[more]
Q940G9_ARATH	7.4e-11	54.84	Periaxin-like protein OS=Arabidopsis thaliana GN=At5g09530/F17I14_280 PE=2 SV=1	[more]
Q9LXB8_ARATH	7.4e-11	54.84	Hydroxyproline-rich glycoprotein family protein OS=Arabidopsis thaliana GN=F17I1...	[more]

BLAST of CmoCh11G014740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09530.1	3.8e-14	54.84	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09520.1	9.0e-08	49.25	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmoCh11G014740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110271\|ref\|XP_008455139.1\|	1.1e-23	50.31	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|659110269\|ref\|XP_008455138.1\|	1.3e-19	44.19	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|449438230\|ref\|XP_004136892.1\|	1.6e-19	46.54	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|778724535\|ref\|XP_011658824.1\|	6.2e-19	48.61	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|778724533\|ref\|XP_011658823.1\|	9.3e-15	47.06	PREDICTED: periaxin-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G014740.1	CmoCh11G014740.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G014740	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G014740	Cucurbita maxima (Rimu)	cmacmoB494
CmoCh11G014740	Wild cucumber (PI 183967)	cmocpiB133
CmoCh11G014740	Cucumber (Chinese Long) v2	cmocuB134
CmoCh11G014740	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G014740	Melon (DHL92) v3.5.1	cmomeB094
CmoCh11G014740	Melon (DHL92) v3.5.1	cmomeB134
CmoCh11G014740	Watermelon (Charleston Gray)	cmowcgB072
CmoCh11G014740	Watermelon (97103) v1	cmowmB071
CmoCh11G014740	Cucurbita pepo (Zucchini)	cmocpeB092
CmoCh11G014740	Cucurbita pepo (Zucchini)	cmocpeB095
CmoCh11G014740	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G014740	Bottle gourd (USVL1VR-Ls)	cmolsiB104
CmoCh11G014740	Bottle gourd (USVL1VR-Ls)	cmolsiB108
CmoCh11G014740	Cucumber (Gy14) v2	cgybcmoB881
CmoCh11G014740	Cucumber (Gy14) v2	cgybcmoB879
CmoCh11G014740	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G014740	Melon (DHL92) v3.6.1	cmomedB100
CmoCh11G014740	Silver-seed gourd	carcmoB0396
CmoCh11G014740	Silver-seed gourd	carcmoB0401
CmoCh11G014740	Silver-seed gourd	carcmoB0508
CmoCh11G014740	Cucumber (Chinese Long) v3	cmocucB0157
CmoCh11G014740	Cucumber (Chinese Long) v3	cmocucB0160
CmoCh11G014740	Watermelon (97103) v2	cmowmbB136
CmoCh11G014740	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh11G014740	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh11G014740	Cucurbita moschata (Rifu)	cmocmoB125
CmoCh11G014740	Cucumber (Gy14) v1	cgycmoB0622
CmoCh11G014740	Cucumber (Gy14) v1	cgycmoB0624