CmoCh11G014700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G014700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 10350764 .. 10351090 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTACCTAAAGTGTTTGAAGAGCTTCTGAAGCCTGAACTACCCAGTTTGTCAAAGCCTGAGCTTCCTCCGTTGCCAAAGGTTGAGTTACCTCCTTTGGAAACGCCTGAAGTGCCTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGACGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAACTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATTCCTTCATTCAACCCACCACATACATCTACCATCAAACCTTGA

mRNA sequence

ATGCCACTACCTAAAGTGTTTGAAGAGCTTCTGAAGCCTGAACTACCCAGTTTGTCAAAGCCTGAGCTTCCTCCGTTGCCAAAGGTTGAGTTACCTCCTTTGGAAACGCCTGAAGTGCCTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGACGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAACTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATTCCTTCATTCAACCCACCACATACATCTACCATCAAACCTTGA

Coding sequence (CDS)

ATGCCACTACCTAAAGTGTTTGAAGAGCTTCTGAAGCCTGAACTACCCAGTTTGTCAAAGCCTGAGCTTCCTCCGTTGCCAAAGGTTGAGTTACCTCCTTTGGAAACGCCTGAAGTGCCTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGACGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAACTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATTCCTTCATTCAACCCACCACATACATCTACCATCAAACCTTGA

Homology

[Close]

BLAST of CmoCh11G014700 vs. TrEMBL
Match: A0A067EC93_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPLETPEVPEFSKPELPKLPQLPKFDVPEV 61
           P PK   EL K ELP LSKPELP   KVELPPL  PE+PE  KPELPK+P+LP+F  P +
Sbjct: 24  PFPK--PELPKVELPPLSKPELP---KVELPPLTKPELPEIPKPELPKVPELPEFPKPAL 83

Query: 62  P---ELPNVPKPELPKLPELTPLPKPVLPTLPKDIP----IPSFNPPHTSTIKP 109
           P   E+P +PKPELP+LPE   +PKP LP LP ++P    +P F  P  ST  P
Sbjct: 84  PKKLEVPEIPKPELPELPEFPEIPKPELPELP-ELPSFPHLPEFPKPTHSTSNP 131

[Close]

BLAST of CmoCh11G014700 vs. TrEMBL
Match: M5VM97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018043mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-15
Identity = 67/132 (50.76%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPLET---PEVPEFSKPELPKLP--QLPKF 61
           PLP  F  L KPELP L KPELP LPK ELP L     PE+P+  KPELP+LP  +LP  
Sbjct: 27  PLP-TFPTLPKPELPQLPKPELPQLPKPELPELPQLPKPELPQLPKPELPQLPKPELPHL 86

Query: 62  DVP---------EVPELPN---VPKPELPKLPELTPLPK----------PVLPTLPKDIP 107
             P         E+P LPN   +PKPELPKLPE+  LP           P +PTLPKD P
Sbjct: 87  SCPSCRSQNCQPELPPLPNFPTLPKPELPKLPEIPTLPHLPADLPKPTLPSIPTLPKDTP 146

[Close]

BLAST of CmoCh11G014700 vs. TrEMBL
Match: M5VLD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 60/127 (47.24%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 9   ELLKPELPSLSKPELPPLPKVELPPLETPEVPEFSKPEL--------------------P 68
           +L KPELP L KPELP LPK ELP L  PE+P   KP+L                    P
Sbjct: 34  QLPKPELPQLPKPELPTLPKPELPTLPKPELPTLPKPKLPPVPHVPTLPKPEGLKLAEEP 93

Query: 69  KLPQLPKFDVPEVPELPNVPKPELPKLPELTPLPK----------PVLPTLPKDIPIPSF 106
            +P+LPK ++P  P  P +PKPELPKLPE+ PLP           P +PTLPKD P PS 
Sbjct: 94  HVPELPKPELPPRPNFPTLPKPELPKLPEIPPLPHLPADLPKPTLPSIPTLPKDTPGPSL 153

[Close]

BLAST of CmoCh11G014700 vs. TrEMBL
Match: A0A059BBS5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00973 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 1   MPLPKVFEELLKPELP------SLSKPELPPLPKVELPPL------ETPEVPEFSKPELP 60
           + LP+V  EL KPELP      SL KPELP LPKVELP +      E PEVPE  KPELP
Sbjct: 35  LALPEV-PELPKPELPHLPDIPSLPKPELPSLPKVELPSVPELPKPELPEVPELPKPELP 94

Query: 61  KLPQLPKFDVPEVPELPNVPKPELPKLPELTPLPKPVLPTLPK-DIP-IPSFNPPHTSTI 107
            LP +     PE+PE+P +PKPELP LP +  LPKP LP+LPK ++P IP    P   TI
Sbjct: 95  HLPDIVSLPKPELPEVPELPKPELPHLPNIPSLPKPELPSLPKVELPSIPELPKPELPTI 153

[Close]

BLAST of CmoCh11G014700 vs. TrEMBL
Match: A0A151SW58_CAJCA (IgA FC receptor OS=Cajanus cajan GN=KK1_014458 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-14
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 10  LLKPELPSLSKPELPPLP---KVELPPLETPEVPEFSKPELPKLPQLPKFDVPEVPELPN 69
           L KPE+P L KPELPPLP   K ELP  E P+VPEF KPE+PK+P+LPK   PE+P++P 
Sbjct: 33  LPKPEIPQLDKPELPPLPELPKPELPKPEIPKVPEFPKPEVPKVPELPK---PELPKVPE 92

Query: 70  VPKPELPKLPELTPLPK-PVLPTLPK 92
           +PKPELPK+PEL  +P+ P +P LPK
Sbjct: 93  LPKPELPKVPELPQVPELPKVPELPK 115

[Close]

BLAST of CmoCh11G014700 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-15
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 3   LPKVFEELLKPELPSLSKPELPPLPKVELPPLETPEVPEFSKPELPKLPQLPK---FDVP 62
           LPK+ E    P++P + KPELP LP  E+P LE P+VPE  KPELPK+P+LPK      P
Sbjct: 221 LPKMPE---LPKMPEIQKPELPKLP--EVPKLEAPKVPEIQKPELPKMPELPKMPEIQKP 280

Query: 63  EVPELPNVPKPELPKLPELTPLPKPVLPTLPK 92
           E+P++P + KPELPK+PE   +PKP LPT+P+
Sbjct: 281 ELPKMPEIQKPELPKVPE---VPKPELPTVPE 304

[Close]

BLAST of CmoCh11G014700 vs. TAIR10
Match: AT5G09520.1 (AT5G09520.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-10
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 20  KPELPPLPKVELPPLETPEVPEFSKPELPKLPQLPKFDVPEVPELPNVPKPELPKLPELT 79
           KPE+P  P  ELP  E P++PEF K ELPKLP++PK   PE+P+LP + KPELP  PEL 
Sbjct: 40  KPEIPTFP--ELPKPEMPKLPEFPKLELPKLPEIPK---PEMPKLPEIQKPELPTFPELP 99

Query: 80  PLPK------PVLPTLPK--DIPIPSFNPP 102
            +P+      P LP LPK  +  +P+F  P
Sbjct: 100 KMPEFPKFDFPKLPELPKPEETKVPAFTMP 124

[Close]

BLAST of CmoCh11G014700 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 4.9e-27
Identity = 85/159 (53.46%), Postives = 95/159 (59.75%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVE------LPPLETPEVPEFSKPELPKLPQLPK 61
           PLP V EEL KPE+P+L KPELPPLPKVE      LPPLE P+VPE  KPELPKLP+LPK
Sbjct: 39  PLPHVPEELPKPEIPTLPKPELPPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPK 98

Query: 62  F--------------------------------DVPEVPELPNVPKPELPKL-------- 109
                                            ++P++PELP+VPKPELPKL        
Sbjct: 99  VPNFDHSKVPEVPTIPKFDLPKLAEVSDHLPKPELPKLPELPSVPKPELPKLPELPNIPK 158

[Close]

BLAST of CmoCh11G014700 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-25
Identity = 76/144 (52.78%), Postives = 90/144 (62.50%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPL-----------------------ETPE 61
           PLPKV EEL KPE+P+L KP+LPPLPK ELPPL                       E P+
Sbjct: 39  PLPKVPEELPKPEMPTLPKPQLPPLPKFELPPLPHLPPLEKPKLPELPKYELPKFPELPK 98

Query: 62  VPEFSKPELPKLPQLPKFDV--------------PEVPELPNVPKPELPKLPELTPLPKP 109
           VP F   ++P++P LPKFD+              P++PELPNVPKPELPKLPEL  LPKP
Sbjct: 99  VPSFDLSKIPEVPSLPKFDISKLPEVSNPPKSELPKLPELPNVPKPELPKLPELPLLPKP 158

[Close]

BLAST of CmoCh11G014700 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-24
Identity = 83/172 (48.26%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPL------ETPEVPEFSKPEL-------- 61
           PLPKV EEL K E+P+L+KPELPPLPK ELPPL      E P++PE SKPEL        
Sbjct: 40  PLPKVPEELPKLEIPTLAKPELPPLPKFELPPLPHLPPLEKPKLPELSKPELPKLPELPK 99

Query: 62  ---------PKLPQLPKFD----------------------------VPEVPELPNVPKP 109
                    P++P +PKFD                            +P++PELPNVPKP
Sbjct: 100 VPNLDLSKIPQVPSVPKFDLPKLSEVSNPPQSELPKSPELSNGLKPELPKLPELPNVPKP 159

[Close]

BLAST of CmoCh11G014700 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.6e-23
Identity = 79/159 (49.69%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPL------ETPEVPEFSKPELPKLPQLPK 61
           P+P   E L KPE+P+L K ELPPLPKVELPPL      E P+VPE  KPELPKLP+LPK
Sbjct: 40  PIPHGPEGLPKPEIPTLPKSELPPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPK 99

Query: 62  F--------------------------------DVPEVPELPNVPKPELPKL-------- 109
                                            ++P++PELPN+PKPELPKL        
Sbjct: 100 VPNFDHSKVPEIPTMPKFDLPKLAEVPDHLPKPELPKLPELPNLPKPELPKLPELPNIPK 159

[Close]

BLAST of CmoCh11G014700 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 9.6e-23
Identity = 77/140 (55.00%), Postives = 85/140 (60.71%), Query Frame = 1


Query: 2   PLPKVFEELLKPELPSLSKPELPPLPKVELPPL------------ETPEVP--------- 61
           PLP   EEL KPE+PSL   E PPLPKVELPPL            E P+VP         
Sbjct: 39  PLP---EELPKPEIPSLPNLEFPPLPKVELPPLPHLPPLEKPKLPELPKVPNLDHSKDSS 98

Query: 62  ---------EFSKPELPKLPQLPKF---DVPEVPELPNVPKPELPKLPELTPLPKPVLPT 109
                    E  KPE PK P+LP F   +VP++PELPNVPKPELPKLPE  PLPKP   +
Sbjct: 99  NVPKLSEVSELPKPEFPKFPELPNFPKPEVPKLPELPNVPKPELPKLPEFPPLPKPAFAS 158

The following BLAST results are available for this feature:

BLAST of CmoCh11G014700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G014700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EC93_CITSI	1.0e-15	56.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 S...	[more]
M5VM97_PRUPE	8.7e-15	50.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018043mg PE=4 SV=1	[more]
M5VLD6_PRUPE	1.1e-14	47.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1	[more]
A0A059BBS5_EUCGR	1.9e-14	54.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00973 PE=4 SV=1	[more]
A0A151SW58_CAJCA	9.6e-14	61.63	IgA FC receptor OS=Cajanus cajan GN=KK1_014458 PE=4 SV=1	[more]

BLAST of CmoCh11G014700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09530.1	6.0e-15	54.35	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09520.1	4.4e-10	50.00	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmoCh11G014700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110271\|ref\|XP_008455139.1\|	4.9e-27	53.46	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|778724535\|ref\|XP_011658824.1\|	6.0e-25	52.78	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|659110269\|ref\|XP_008455138.1\|	6.6e-24	48.26	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|449438230\|ref\|XP_004136892.1\|	5.6e-23	49.69	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|778724533\|ref\|XP_011658823.1\|	9.6e-23	55.00	PREDICTED: periaxin-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G014700.1	CmoCh11G014700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G014700	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G014700	Melon (DHL92) v3.6.1	cmomedB100
CmoCh11G014700	Silver-seed gourd	carcmoB0396
CmoCh11G014700	Silver-seed gourd	carcmoB0401
CmoCh11G014700	Silver-seed gourd	carcmoB0508
CmoCh11G014700	Cucumber (Chinese Long) v3	cmocucB0157
CmoCh11G014700	Cucumber (Chinese Long) v3	cmocucB0160
CmoCh11G014700	Watermelon (97103) v2	cmowmbB136
CmoCh11G014700	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh11G014700	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh11G014700	Cucurbita moschata (Rifu)	cmocmoB125
CmoCh11G014700	Cucumber (Gy14) v1	cgycmoB0622
CmoCh11G014700	Cucumber (Gy14) v1	cgycmoB0624
CmoCh11G014700	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G014700	Cucurbita maxima (Rimu)	cmacmoB494
CmoCh11G014700	Wild cucumber (PI 183967)	cmocpiB133
CmoCh11G014700	Cucumber (Chinese Long) v2	cmocuB134
CmoCh11G014700	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G014700	Melon (DHL92) v3.5.1	cmomeB094
CmoCh11G014700	Melon (DHL92) v3.5.1	cmomeB134
CmoCh11G014700	Watermelon (Charleston Gray)	cmowcgB072
CmoCh11G014700	Watermelon (97103) v1	cmowmB071
CmoCh11G014700	Cucurbita pepo (Zucchini)	cmocpeB092
CmoCh11G014700	Cucurbita pepo (Zucchini)	cmocpeB095
CmoCh11G014700	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G014700	Bottle gourd (USVL1VR-Ls)	cmolsiB104
CmoCh11G014700	Bottle gourd (USVL1VR-Ls)	cmolsiB108
CmoCh11G014700	Cucumber (Gy14) v2	cgybcmoB881
CmoCh11G014700	Cucumber (Gy14) v2	cgybcmoB879