CmoCh11G014680 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G014680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr11 : 10317006 .. 10319882 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTACTTTTCGACTTTTATATCTTCTCTCATATTAAGTGCTTTTATGTTGATGAGCTTCGATTGTTTTGTCATGGCGGTGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCCTGAAGAGCTTCCGAAGCCAGAAGTACCTAGTTTGTCAAAGCCCGAACTTCCTCAATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAAGTGCCCGAATTGTCGAAACCTGAACTCCCAAAATTACCTCAATTACCTAAACTTGAAGTTCCCGAAGTACCAAAATTGTAACGACCCAAAATTTTCTACTTAATTTAAGGTCGCTACTGTATACATACCATAAACATTGAATGCGGAAGACTTCATTTAAATTCCATAAAACATAACCTTTAACTTAAAAACACAGCCATGGACTTACGTGTTTCGAAAACATCTTTAAAACGACACAACAAAAGACCCAATATAAAATAAATAAGCGTTTAAGTTTAAGACATCCTATTCTATCCTAAGTCTAGGAAAATAAATACCACTAGCCTATGCAGCTGCCATGATCTCGAGTTGCGATGCCGTCGTCAGCCGTACAGGAATGCCTTGCCTTAACCTGAAAAATGTAGTAGCACATGGCCTGAGTATTTAAAGAAATACTCAGTAAGTGACCCCACTATTGGGGTTAAATGCAACAATCACATGCAATGAAATGATGGGACCTATCTTTCGTTTCGTTTCGTTTCGTTTCGTTTCTTTTTCGTTTCGTTTCGTTTTCCCAACGGTGTAATCCTAACAGGTAATCGTGGACGTGTACCATATACTCTACACGCAGCCCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACCGCTGGGCCACTGTCCCTAGCCGGTGGGCATGCTCTGGGGGCCCACCGGGACCCGTTAAAACTAAAACCGTCACGGCAGCGCTATGCGGAGCATAACGATCGTTGTCCTGCCATTTGGATGTACGCGTCCGTACCCTCGTGATGGGATAGGGGTAACCCCCCAAATGCATGAACACACAATATGCATGAGGTCCCACTAGTCCTACAGTCATCATTTAATGAGCATAACCCCGCGCCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTCGTTACGCGTATCATACATATTCCTAGCGGGGTTATGTATCGTGCAATTTACCGTATTTCATGTCATACAATTCATTCAGTTACATTCCAATACCCATACAACAAGCCATAATCGTACAAGGACCACACATCGTCACATGCATTCATATCACATCAACCAAGCAGCATAAATAACATACATTCACGTTCACATGATTTCGTACTTAAGCACAATAATCTAGCATACAATGGATCATATCATAACCAAGTCATAACGTAAACACTTCATAGTCATATCGTTCTCTAACTTACCATAGCCTTAACGTTCTTATACCTATCACAGACATATCATTACGTGACGTACCTTAGTCATATCATCACCAGAACGTATCCTAACGCCATCGTTCTATCAATCTATCACAAACCTATCCCTTTCTACCCATAACCTAACCGTATTCTTTCATCAATCTCTCCTATCCATAGCACTCCGGTATGTAACCTCCTATCTTAAACATCTCCTAGAGCACATCATACCATAATTATTATCATACAATCCACATGTTATATAGCATAACATAACATATAGGAAGCAAATCGATCCACAGACAATTCACACATATCAATATATATGACGCGTGCCGAACCACAGGGCACGTGTCAACATCAAATATAACCGTGCCGATAGTAAGGTCACTTACCTGGCTAGCTTAAGTCGTTGTCACAAATATATCCTTAATGAAAATTCGATTCCTTCCTTTGAAATCCGAGTCAACCTATATGAGTTCATGACATCAATTTCAAGTTGAACTCTATACAATTATTTCTCTAAGTTACCTTGTTAAAATTCTGATATTTACTGTTACACAGAATTTAATTTCATGCCCTCTGATATCTCCTGTTATATTTTTAAATTCTGTTTAACAAATCTTCCCGCCTCCCTCATGGTAATTATTTTCATTCCCATTCTGTAAATTGATTCTCAGTTTTGTAAACATCTGTAAATAAGATATTACTCTAATTCTATATTTATTTTCATTATGTAAACCGATATTATTGGCCAATTTTAATTTGGCTCCTATCTTACAGATTTATGGATCTGACAGCTAAAATTATATTGATTCTAACCTTATTTCCTATAACTTCCGATGCTAAAAAAAAAAATCTAATTAATTGAACATGAGATCTAATTATTACATACGGTCAGATAGGAAAGAAGATTTGATCCTAAATTAATTTCTTATAAGCATAACTACAAAGGAAAAGGAGTTCTGATATAGAATTTTACCGTAATAACTGACAAAAATCTCTAAATCTACAATCTGTTCAAATACTTCTTCTCAAATCTGACGATGATTGTTTTCTGTTTCTTTCTTTTTTTTTTTTTGTCAGGTTTTCTGTTTCTTTTTTTGCAGCGTACATGGGCAGAGGAGAGATAATTGTGGGAAGGGATGAGAGGTTAATGGAGAGAGATGGGGAAAGGTTTATTTTTTTTTATTTATTTATTTTAATTAATTAATTAATTAATTTTTTTTTATTATTATTATAATTTTAACTATTTTTTATAATTATTTTTATTCTTTATTTCTTTATTTAGGCTTGGGCTATTACAAAAATTGCCCAACTTACCTAAACTTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCCTTCAACCCACCACATACATCTACCACTAAACCTTAA

mRNA sequence

ATGGCTACTTACTTTTCGACTTTTATATCTTCTCTCATATTAAGTGCTTTTATGTTGATGAGCTTCGATTGTTTTGTCATGGCGGTGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCCTGAAGAGCTTCCGAAGCCAGAAGTACCTAGTTTGTCAAAGCCCGAACTTCCTCAATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAACCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCCTTCAACCCACCACATACATCTACCACTAAACCTTAA

Coding sequence (CDS)

ATGGCTACTTACTTTTCGACTTTTATATCTTCTCTCATATTAAGTGCTTTTATGTTGATGAGCTTCGATTGTTTTGTCATGGCGGTGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCCTGAAGAGCTTCCGAAGCCAGAAGTACCTAGTTTGTCAAAGCCCGAACTTCCTCAATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAACCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCCTTCAACCCACCACATACATCTACCACTAAACCTTAA
Homology
[Close]
BLAST of CmoCh11G014680 vs. TrEMBL
Match: M5VLD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 47/81 (58.02%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 27 MAVSARHLLEMPLPKVPEELPKPEVPSLSKPELPQLPKVELPPLEK------PKPVLPTL 86
          M   AR LLE  LP+VPE LPKPE+P L KPELPQLPK ELP L K      PKP LPTL
Sbjct: 1  MVAGARFLLETSLPQVPE-LPKPELPPLHKPELPQLPKPELPQLPKPELPTLPKPELPTL 60

Query: 87 PK----DIPIPSFNP-PHTST 97
          PK     +P P   P PH  T
Sbjct: 61 PKPELPTLPKPKLPPVPHVPT 80

[Close]
BLAST of CmoCh11G014680 vs. TrEMBL
Match: M5VHP3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020401mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 47/84 (55.95%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 12 LILSAFMLMSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPELPQLPKVELPPLE 71
          L+L AF LMS     M   AR LLE  LP+VPE LPKPE+P L KPELP LPK ELP  +
Sbjct: 14 LLLFAFSLMSTK--TMVAGARFLLETSLPQVPE-LPKPELPQLPKPELPHLPKPELP--Q 73

Query: 72 KPKPVLPTLPK----DIPIPSFNP 92
           PKP LP LPK     +P P   P
Sbjct: 74 VPKPELPQLPKPELPQLPKPELPP 92

[Close]
BLAST of CmoCh11G014680 vs. TrEMBL
Match: A5C3E1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001659 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 50/110 (45.45%), Postives = 58/110 (52.73%), Query Frame = 1 

Query: 29  VSARHLLEMPLPKVPE----ELPK-PEVPSLSKPELPQLPKVELPPL------------- 88
           +++RHLLE  LP VPE    ELP  P +P+L K ELP LPKVELPPL             
Sbjct: 27  LASRHLLETTLPTVPELPKVELPPLPTLPTLPKFELPPLPKVELPPLPHVPTLQEPQLPT 86

Query: 89  ---------------EKPK------PVLPTLPKDIPIPSFNPPHTSTTKP 100
                          EKP+      P +PTLPKDIP PS +PPH STT P
Sbjct: 87  LPKPELPTVPHVPALEKPELPKPTLPTIPTLPKDIPFPSLSPPH-STTSP 135

[Close]
BLAST of CmoCh11G014680 vs. TrEMBL
Match: A0A059BAT7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00966 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-06
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 

Query: 13 ILSAFML-MSFDCFVMAVSARHLLEMPLPKVPE----ELPK-PEVPSLSKPELPQLPKVE 72
          +LS F+L +S       V AR LL+  LP+VPE    ELP+ P++PSL KPELP LPKVE
Sbjct: 10 LLSLFVLALSLTIGQNRVGARQLLDATLPEVPELPKPELPQLPDIPSLPKPELPSLPKVE 69

Query: 73 LPPL-EKPKPVLPTLPK 83
          LPPL E PKP  PT+PK
Sbjct: 70 LPPLPELPKPEFPTIPK 86

[Close]
BLAST of CmoCh11G014680 vs. TrEMBL
Match: A0A061E189_THECC (Hydroxyproline-rich glycoprotein family protein, putative OS=Theobroma cacao GN=TCM_007392 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-06
Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1 

Query: 6   STFISSLILSAFMLMSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPELPQLPKV 65
           S  + +L++ A + +S   F  +V AR+L +  L K   ELPKPE+P+L KPELP LP++
Sbjct: 8   SFVLLTLLVKAVLSLSGHTF--SVEARNLQQTTLSK--PELPKPELPTLPKPELPPLPEI 67

Query: 66  ------------ELPPL----EKPKPVLPT---LPKDIPIPSFNPPHTSTTKP 100
                       ELPPL    + P+P LPT   LPKD+PIP F+PPH STT P
Sbjct: 68  PTLPEPEVPKMPELPPLPHIPDLPQPTLPTIPSLPKDLPIPFFSPPH-STTSP 115

[Close]
BLAST of CmoCh11G014680 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 60/103 (58.25%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 1   MATY-FSTFISSLILSAFMLMSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPEL 60
           MAT+  ST  + LIL   M+MSFD  +M+VSARHLLE PLP VPEELPKPE+P+L KPEL
Sbjct: 1   MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPEL 60

Query: 61  PQLPKVELPPL------------EKPKPVLPTLPKDIPIPSFN 91
           P LPKVELPPL            E PKP LP LP+   +P+F+
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPNFD 103

[Close]
BLAST of CmoCh11G014680 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1 

Query: 1   MATY-FSTFISSLILSAFMLM-SFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPE 60
           M+T+ +STF S LI    M+M SFD F+M  SARHLLE PLPKVPEELPK E+P+L+KPE
Sbjct: 1   MSTHRYSTFASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPTLAKPE 60

Query: 61  LPQLPKVE------LPPLEKP------KPVLPTLPKDIPIPSFN 91
           LP LPK E      LPPLEKP      KP LP LP+   +P+ +
Sbjct: 61  LPPLPKFELPPLPHLPPLEKPKLPELSKPELPKLPELPKVPNLD 104

[Close]
BLAST of CmoCh11G014680 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 4   YFSTFISSLILSAFMLMSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPELPQLP 63
           Y + F   LI     +MSFD F M  SARHLLE PLPKVPEELPKPE+P+L KP+LP LP
Sbjct: 6   YSTVFALHLIFGVLTMMSFD-FFMTASARHLLETPLPKVPEELPKPEMPTLPKPQLPPLP 65

Query: 64  KVELPPLEK----PKPVLPTLPK-------DIP-IPSFN 91
           K ELPPL       KP LP LPK       ++P +PSF+
Sbjct: 66  KFELPPLPHLPPLEKPKLPELPKYELPKFPELPKVPSFD 103

[Close]
BLAST of CmoCh11G014680 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 9.1e-12
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1 

Query: 6   STFISSLILSAFML-MSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPELPQLPK 65
           ST  +SL+L   ++ MSFD  +M+VSARHLLE P+P  PE LPKPE+P+L K ELP LPK
Sbjct: 7   STLKASLVLGILIVTMSFDFLIMSVSARHLLETPIPHGPEGLPKPEIPTLPKSELPPLPK 66

Query: 66  VELPPL------------EKPKPVLPTLPKDIPIPSFN 91
           VELPPL            E PKP LP LP+   +P+F+
Sbjct: 67  VELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPNFD 104

[Close]
BLAST of CmoCh11G014680 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-10
Identity = 56/104 (53.85%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 1   MATY-FSTFISSLILSAFMLMSFDCFVMAVSARHLLEMPLPKVPEELPKPEVPSLSKPEL 60
           MAT  FST +  LIL  FMLM+FD  +M V AR+LLE PL   PEELPKPE+PSL   E 
Sbjct: 1   MATLRFSTLVFPLILGVFMLMNFDISIMTVDARYLLETPL---PEELPKPEIPSLPNLEF 60

Query: 61  PQLPKVELPPLEK----PKPVLPTLPKDIPIPSFNPPHTSTTKP 100
           P LPKVELPPL       KP LP LPK   +P+ +    S+  P
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKLPELPK---VPNLDHSKDSSNVP 98

The following BLAST results are available for this feature:
BLAST of CmoCh11G014680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G014680 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VLD6_PRUPE2.1e-0758.02Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1[more]
M5VHP3_PRUPE1.8e-0655.95Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020401mg PE=4 SV=1[more]
A5C3E1_VITVI2.3e-0645.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001659 PE=4 SV=1[more]
A0A059BAT7_EUCGR5.2e-0657.14Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00966 PE=4 SV=1[more]
A0A061E189_THECC5.2e-0645.13Hydroxyproline-rich glycoprotein family protein, putative OS=Theobroma cacao GN=... [more]
BLAST of CmoCh11G014680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G014680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110271|ref|XP_008455139.1|3.6e-1658.25PREDICTED: periaxin-like [Cucumis melo][more]
gi|659110269|ref|XP_008455138.1|7.4e-1456.73PREDICTED: periaxin-like [Cucumis melo][more]
gi|778724535|ref|XP_011658824.1|5.3e-1255.56PREDICTED: periaxin-like [Cucumis sativus][more]
gi|449438230|ref|XP_004136892.1|9.1e-1253.06PREDICTED: periaxin-like [Cucumis sativus][more]
gi|778724533|ref|XP_011658823.1|3.8e-1053.85PREDICTED: periaxin-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G014680.1CmoCh11G014680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G014680Watermelon (97103) v2cmowmbB136
CmoCh11G014680Cucurbita moschata (Rifu)cmocmoB096
CmoCh11G014680Cucurbita moschata (Rifu)cmocmoB110
CmoCh11G014680Cucurbita moschata (Rifu)cmocmoB125
CmoCh11G014680Cucumber (Gy14) v1cgycmoB0622
CmoCh11G014680Cucumber (Gy14) v1cgycmoB0624
CmoCh11G014680Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G014680Cucurbita maxima (Rimu)cmacmoB494
CmoCh11G014680Wild cucumber (PI 183967)cmocpiB133
CmoCh11G014680Cucumber (Chinese Long) v2cmocuB134
CmoCh11G014680Melon (DHL92) v3.5.1cmomeB085
CmoCh11G014680Melon (DHL92) v3.5.1cmomeB094
CmoCh11G014680Melon (DHL92) v3.5.1cmomeB134
CmoCh11G014680Watermelon (Charleston Gray)cmowcgB072
CmoCh11G014680Watermelon (97103) v1cmowmB071
CmoCh11G014680Cucurbita pepo (Zucchini)cmocpeB092
CmoCh11G014680Cucurbita pepo (Zucchini)cmocpeB095
CmoCh11G014680Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G014680Bottle gourd (USVL1VR-Ls)cmolsiB104
CmoCh11G014680Bottle gourd (USVL1VR-Ls)cmolsiB108
CmoCh11G014680Cucumber (Gy14) v2cgybcmoB881
CmoCh11G014680Cucumber (Gy14) v2cgybcmoB879
CmoCh11G014680Melon (DHL92) v3.6.1cmomedB091
CmoCh11G014680Melon (DHL92) v3.6.1cmomedB100
CmoCh11G014680Silver-seed gourdcarcmoB0396
CmoCh11G014680Silver-seed gourdcarcmoB0401
CmoCh11G014680Silver-seed gourdcarcmoB0508
CmoCh11G014680Cucumber (Chinese Long) v3cmocucB0157
CmoCh11G014680Cucumber (Chinese Long) v3cmocucB0160