CmoCh11G013250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G013250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(4-hydroxy-3-methylbut-2-enyl diphosphate reductase) (1.17.1.2)
Location	Cmo_Chr11 : 9155725 .. 9157487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCACTCGAGGTATCTGTTGAACACAACTCTTTGTGAGAAACACTCACTCTTTATTAACACTAATCGAGAAGAGATTACAAGACACTCTATAATAAATACTAAACAATTTATTCCTAAAATACCTTAATTCTTTTCCTAAAAATAGGCTTAGAATATCATCAGTTAACTGATGCTTTGGAGCCCTCATTATCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCTCTTGTTGAAGTTCGTATCGACAAGTTGCAAAACAGTATTTGCTTGTCTTGCATACTTTTAGTTGTCACTGGTGTGTGTATCTAACCTTTTATGTCCTATTAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATGTAAGTTACCCTACAGATTTCAGCTCTAATCCCTTCTAGTTTCTTGGTTCACTTTTCAATTTGGCATTACATTGTAAAGCCCACCTTTTCTTTCCTTGATTACTCATCGTTTGTCATCCTTGTGAATCCATGTTAGCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

mRNA sequence

ATGTTCTCACTCGAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

Coding sequence (CDS)

ATGTTCTCACTCGAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

Homology

[Close]

BLAST of CmoCh11G013250 vs. Swiss-Prot
Match: ISPH_ORYSJ (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-41
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMY+LV+ K+DL+LVVGGWNSS+TSHLQEI E  GIPSYWIDSEQRIGPGN+I+Y
Sbjct: 347 QERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISY 406

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 407 KLNHGELVEKENWLPEGPITIGVTSGASTP 436

[Close]

BLAST of CmoCh11G013250 vs. Swiss-Prot
Match: ISPH_ARATH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-41
Identity = 77/90 (85.56%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAY
Sbjct: 354 QERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAY 413

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KL++GELVEKEN+LPKGPITIGVTSGASTP
Sbjct: 414 KLHYGELVEKENFLPKGPITIGVTSGASTP 443

[Close]

BLAST of CmoCh11G013250 vs. Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM+KLVE  LDLM+V+GG+NSS+T+HLQEI+ ER IPSY IDS  RIGPGNR+ +
Sbjct: 293 QERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEH 352

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H  L  KENWLP+GPI +G+TSGASTP
Sbjct: 353 KPLHRPLEIKENWLPEGPIVVGITSGASTP 382

[Close]

BLAST of CmoCh11G013250 vs. Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-29
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +
Sbjct: 292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEH 351

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H +L   E WLP GP+TIG+TSGASTP
Sbjct: 352 KPLHTDLTTTEPWLPAGPLTIGITSGASTP 381

[Close]

BLAST of CmoCh11G013250 vs. Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-29
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +
Sbjct: 292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEH 351

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H +L   E WLP GP+TIG+TSGASTP
Sbjct: 352 KPLHTDLTTTEPWLPAGPLTIGITSGASTP 381

[Close]

BLAST of CmoCh11G013250 vs. TrEMBL
Match: A0A0A0K3D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075680 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-43
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKG ITIGVTSGASTP
Sbjct: 416 KLNHGELVEKENWLPKGHITIGVTSGASTP 445

[Close]

BLAST of CmoCh11G013250 vs. TrEMBL
Match: A0A059AMV0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01241 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-43
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNR+A 
Sbjct: 355 QERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRVAS 414

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 415 KLNHGELVEKENWLPKGPITIGVTSGASTP 444

[Close]

BLAST of CmoCh11G013250 vs. TrEMBL
Match: K7NBR0_SIRGR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Siraitia grosvenorii PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-43
Identity = 82/90 (91.11%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQ+IAE+RGIPSYW+DSEQRIGPGN+IAY
Sbjct: 358 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQQIAEDRGIPSYWVDSEQRIGPGNKIAY 417

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 418 KLNHGELVEKENWLPRGPITIGVTSGASTP 447

[Close]

BLAST of CmoCh11G013250 vs. TrEMBL
Match: I1LJH2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G120900 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-43
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE  LDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGN+IAY
Sbjct: 350 QERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAY 409

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 410 KLNHGELVEKENWLPEGPITIGVTSGASTP 439

[Close]

BLAST of CmoCh11G013250 vs. TrEMBL
Match: A0A0B2P9W7_GLYSO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Glycine soja GN=glysoja_031587 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-43
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE  LDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGN+IAY
Sbjct: 350 QERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAY 409

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 410 KLNHGELVEKENWLPEGPITIGVTSGASTP 439

[Close]

BLAST of CmoCh11G013250 vs. TAIR10
Match: AT4G34350.1 (AT4G34350.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase)

HSP 1 Score: 168.3 bits (425), Expect = 2.3e-42
Identity = 77/90 (85.56%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAY
Sbjct: 354 QERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAY 413

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KL++GELVEKEN+LPKGPITIGVTSGASTP
Sbjct: 414 KLHYGELVEKENFLPKGPITIGVTSGASTP 443

[Close]

BLAST of CmoCh11G013250 vs. NCBI nr
Match: gi|778725300|ref|XP_004137008.2| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKG ITIGVTSGASTP
Sbjct: 416 KLNHGELVEKENWLPKGHITIGVTSGASTP 445

[Close]

BLAST of CmoCh11G013250 vs. NCBI nr
Match: gi|694400413|ref|XP_009375299.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 84/90 (93.33%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDL+LV+GGWNSS+TSHLQEIAEERGIPSYWIDSE+RIGPGNRIAY
Sbjct: 348 QERQDAMYKLVEEKLDLLLVIGGWNSSNTSHLQEIAEERGIPSYWIDSEKRIGPGNRIAY 407

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 408 KLNHGELVEKENWLPKGPITIGVTSGASTP 437

[Close]

BLAST of CmoCh11G013250 vs. NCBI nr
Match: gi|659109783|ref|XP_008454877.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 351 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 410

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKG ITIGVTSGASTP
Sbjct: 411 KLNHGELVEKENWLPKGHITIGVTSGASTP 440

[Close]

BLAST of CmoCh11G013250 vs. NCBI nr
Match: gi|702463021|ref|XP_010028563.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-43
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNR+A 
Sbjct: 355 QERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRVAS 414

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 415 KLNHGELVEKENWLPKGPITIGVTSGASTP 444

[Close]

BLAST of CmoCh11G013250 vs. NCBI nr
Match: gi|343466165|gb|AEM42976.1| (4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Siraitia grosvenorii])

HSP 1 Score: 181.8 bits (460), Expect = 5.6e-43
Identity = 82/90 (91.11%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQ+IAE+RGIPSYW+DSEQRIGPGN+IAY
Sbjct: 358 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQQIAEDRGIPSYWVDSEQRIGPGNKIAY 417

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 418 KLNHGELVEKENWLPRGPITIGVTSGASTP 447

The following BLAST results are available for this feature:

BLAST of CmoCh11G013250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISPH_ORYSJ	1.4e-41	85.56	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativ...	[more]
ISPH_ARATH	4.0e-41	85.56	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis...	[more]
ISPH_CYAP4	1.1e-30	68.89	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC...	[more]
ISPH_SYNE7	3.5e-29	65.56	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (s...	[more]
ISPH_SYNP6	3.5e-29	65.56	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ...	[more]

BLAST of CmoCh11G013250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3D8_CUCSA	1.3e-43	95.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075680 PE=3 SV=1	[more]
A0A059AMV0_EUCGR	2.3e-43	94.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01241 PE=3 SV=1	[more]
K7NBR0_SIRGR	3.9e-43	91.11	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Siraitia grosvenorii PE=2 ...	[more]
I1LJH2_SOYBN	5.1e-43	93.33	Uncharacterized protein OS=Glycine max GN=GLYMA_11G120900 PE=3 SV=1	[more]
A0A0B2P9W7_GLYSO	5.1e-43	93.33	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Glycine soja GN=glysoja_03...	[more]

BLAST of CmoCh11G013250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34350.1	2.3e-42	85.56	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	[more]

BLAST of CmoCh11G013250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725300\|ref\|XP_004137008.2\|	1.9e-43	95.56	PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cu...	[more]
gi\|694400413\|ref\|XP_009375299.1\|	1.9e-43	93.33	PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Py...	[more]
gi\|659109783\|ref\|XP_008454877.1\|	1.9e-43	95.56	PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-lik...	[more]
gi\|702463021\|ref\|XP_010028563.1\|	3.3e-43	94.44	PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Eu...	[more]
gi\|343466165\|gb\|AEM42976.1\|	5.6e-43	91.11	4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Siraitia grosvenorii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003451	LytB/IspH

Vocabulary: **Biological Process**
Term	Definition
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0050992	dimethylallyl diphosphate biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050992	dimethylallyl diphosphate biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G013250.1	CmoCh11G013250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003451	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	PFAM	PF02401	LYTB	coord: 5..94 score: 9.0
None	No IPR available	PANTHER	PTHR31619	FAMILY NOT NAMED	coord: 6..94 score: 3.6
None	No IPR available	PANTHER	PTHR31619:SF2	4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC	coord: 6..94 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G013250	CmaCh19G006460	Cucurbita maxima (Rimu)	cmacmoB494
CmoCh11G013250	Cla015963	Watermelon (97103) v1	cmowmB109
CmoCh11G013250	MELO3C018407	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G013250	ClCG02G005330	Watermelon (Charleston Gray)	cmowcgB088
CmoCh11G013250	Lsi11G010600	Bottle gourd (USVL1VR-Ls)	cmolsiB089
CmoCh11G013250	Cp4.1LG15g05170	Cucurbita pepo (Zucchini)	cmocpeB095
CmoCh11G013250	MELO3C018407.2	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G013250	Cla97C02G032350	Watermelon (97103) v2	cmowmbB088
CmoCh11G013250	Bhi05G001046	Wax gourd	cmowgoB0119
CmoCh11G013250	Carg22032	Silver-seed gourd	carcmoB0292

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G013250	CmoCh19G006580	Cucurbita moschata (Rifu)	cmocmoB110

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G013250	Cucumber (Chinese Long) v3	cmocucB0123
CmoCh11G013250	Cucumber (Chinese Long) v3	cmocucB0160
CmoCh11G013250	Watermelon (97103) v2	cmowmbB128
CmoCh11G013250	Watermelon (97103) v2	cmowmbB142
CmoCh11G013250	Cucumber (Gy14) v1	cgycmoB0624
CmoCh11G013250	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G013250	Wild cucumber (PI 183967)	cmocpiB111
CmoCh11G013250	Wild cucumber (PI 183967)	cmocpiB136
CmoCh11G013250	Cucumber (Chinese Long) v2	cmocuB108
CmoCh11G013250	Cucumber (Chinese Long) v2	cmocuB137
CmoCh11G013250	Melon (DHL92) v3.5.1	cmomeB077
CmoCh11G013250	Watermelon (Charleston Gray)	cmowcgB076
CmoCh11G013250	Watermelon (97103) v1	cmowmB076
CmoCh11G013250	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G013250	Bottle gourd (USVL1VR-Ls)	cmolsiB079
CmoCh11G013250	Bottle gourd (USVL1VR-Ls)	cmolsiB140
CmoCh11G013250	Cucumber (Gy14) v2	cgybcmoB156
CmoCh11G013250	Cucumber (Gy14) v2	cgybcmoB881
CmoCh11G013250	Melon (DHL92) v3.6.1	cmomedB123
CmoCh11G013250	Silver-seed gourd	carcmoB0905