CmoCh11G013140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G013140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr11 : 9074267 .. 9074612 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAGTGAGTAGGGAGGTTGGAGAAGGCCAAATTGGAAACGTATCCTAACAATATCCCGAAATTAATGAAAACCTGTAAATGGAAAAAAAGGCAACATGTGTTCATTGTTAAGTCAGGGAAATTTGTCAGTACTATTTAATTAACTATTTTATTTAAGATTAAATTAA

mRNA sequence

ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAATTAAATTAA

Coding sequence (CDS)

ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAATTAAATTAA
Homology
[Close]
BLAST of CmoCh11G013140 vs. TrEMBL
Match: A0A124SCB1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004710 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-07
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MSAS   DS +E E LS T LAS   PC+TSQRGDSG+  T   +  EG  PIP++NR  
Sbjct: 118 MSASRSLDSSKESEVLSSTILASPSRPCVTSQRGDSGMPSTPKARNIEGTAPIPNINRHP 177

Query: 61  KLN 64
            +N
Sbjct: 178 NIN 180

[Close]
BLAST of CmoCh11G013140 vs. NCBI nr
Match: gi|976905605|gb|KVH93235.1| (hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-07
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MSAS   DS +E E LS T LAS   PC+TSQRGDSG+  T   +  EG  PIP++NR  
Sbjct: 118 MSASRSLDSSKESEVLSSTILASPSRPCVTSQRGDSGMPSTPKARNIEGTAPIPNINRHP 177

Query: 61  KLN 64
            +N
Sbjct: 178 NIN 180

The following BLAST results are available for this feature:
BLAST of CmoCh11G013140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G013140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A124SCB1_CYNCS6.7e-0752.38Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004710 PE=4 ... [more]
BLAST of CmoCh11G013140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G013140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976905605|gb|KVH93235.1|9.6e-0752.38hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013140.1CmoCh11G013140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G013140Watermelon (Charleston Gray)cmowcgB088
CmoCh11G013140Watermelon (97103) v1cmowmB109
CmoCh11G013140Cucurbita pepo (Zucchini)cmocpeB095
CmoCh11G013140Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G013140Bottle gourd (USVL1VR-Ls)cmolsiB079
CmoCh11G013140Bottle gourd (USVL1VR-Ls)cmolsiB089
CmoCh11G013140Melon (DHL92) v3.6.1cmomedB094
CmoCh11G013140Silver-seed gourdcarcmoB0292
CmoCh11G013140Silver-seed gourdcarcmoB0905
CmoCh11G013140Cucumber (Chinese Long) v3cmocucB0123
CmoCh11G013140Cucumber (Chinese Long) v3cmocucB0165
CmoCh11G013140Watermelon (97103) v2cmowmbB088
CmoCh11G013140Wax gourdcmowgoB0119
CmoCh11G013140Cucurbita moschata (Rifu)cmocmoB110
CmoCh11G013140Wild cucumber (PI 183967)cmocpiB142
CmoCh11G013140Cucumber (Gy14) v1cgycmoB0674
CmoCh11G013140Cucurbita maxima (Rimu)cmacmoB115
CmoCh11G013140Cucurbita maxima (Rimu)cmacmoB494
CmoCh11G013140Wild cucumber (PI 183967)cmocpiB111
CmoCh11G013140Cucumber (Chinese Long) v2cmocuB108
CmoCh11G013140Cucumber (Chinese Long) v2cmocuB143
CmoCh11G013140Melon (DHL92) v3.5.1cmomeB088