CmoCh11G013010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G013010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
Location	Cmo_Chr11 : 8881267 .. 8882928 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG

mRNA sequence

ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG

Coding sequence (CDS)

ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG

Homology

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BLAST of CmoCh11G013010 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-11
Identity = 79/340 (23.24%), Postives = 136/340 (40.00%), Query Frame = 1


Query: 32  DQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFEIMNM 91
           D+ A +AI   + ++++  + ++ TA+  W  L+++++      +     LK +   ++M
Sbjct: 56  DERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLY---LKKQLYALHM 115

Query: 92  KESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAI---EQFADL 151
            E      +      ++ ++   G K EE       L S+P  + ++A+ I   +   +L
Sbjct: 116 SEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIEL 175

Query: 152 KVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNG-GHSRGRGRSGRWRG 211
           K +T   ++      +E++    EN    L+T+G  ++ +RS N  G S  RG+S     
Sbjct: 176 KDVTSALLL------NEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKS----- 235

Query: 212 RGHGRRNDSFHQEKKADKSKVR-CYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKW 271
                        K   KS+VR CYNC   GH+  DC   +    +  G    D      
Sbjct: 236 -------------KNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDD------ 295

Query: 272 EDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVNNIWFLDT 331
               + A    + D   L   +  E   L  PE                    + W +DT
Sbjct: 296 ----NTAAMVQNNDNVVLFINEEEECMHLSGPE--------------------SEWVVDT 338

Query: 332 GASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDV 367
            AS+H T  R  F        GTVK G+ S  +I G GD+
Sbjct: 356 AASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDI 338

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BLAST of CmoCh11G013010 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 133/276 (48.19%), Postives = 176/276 (63.77%), Query Frame = 1


Query: 16  GPIESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVK 75
           G  E+ +    +D RKDQMALAAIYQ IPEE+L LL EK+TAKEAWQ LKT+H+G +RV 
Sbjct: 43  GVWEAIDLEKDIDMRKDQMALAAIYQGIPEEILLLLVEKETAKEAWQMLKTMHMGVKRVM 102

Query: 76  EAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKF 135
           EAK+QTLK E +++ MKE E+IDD+A +LT +++KI   G+K +EAY VKK LR +P KF
Sbjct: 103 EAKVQTLKSELDVLRMKEGESIDDFAMKLTSIISKIRALGEKVDEAYVVKKLLRVMPQKF 162

Query: 136 LHIASAIEQFADLKVMTMEEVIGRLKAYDERIGGSKEN-AEHVLLTQGEWKAKERSDNGG 195
           L + S IEQF D K MTMEEVIGRLKAY+ERI     N  EH+LLT+ EW+AKE      
Sbjct: 163 LQVVSTIEQFGDFKTMTMEEVIGRLKAYEERICVYANNEGEHLLLTRAEWRAKEAKG--- 222

Query: 196 HSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKI 255
                           G+RN      +K DK+                  K KCYNCQK 
Sbjct: 223 ----------------GKRN------RKFDKA------------------KEKCYNCQKY 274

Query: 256 GHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVC 291
           GHY+ +C  ++ E++A++ + +S+++EP LL A+ C
Sbjct: 283 GHYSYECHPEQKEEKAYIVD-KSEDEEPTLLMAEAC 274

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BLAST of CmoCh11G013010 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 150/404 (37.13%), Postives = 220/404 (54.46%), Query Frame = 1


Query: 4   EDEGLFACSRGVGPIESTESLDSLD-ERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQ 63
           ED+G++      G   +  + ++ + ++KD  A A + Q +P+++L  +A KKT KE W 
Sbjct: 40  EDQGVWDVMEPSGSTSAPTAAEAAEAKKKDTKAKAHLLQCLPDDLLMQVAGKKTGKEVWD 99

Query: 64  TLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAY 123
            LK  HVGA+RVKEA++QTLK EF+ M MK+ E++D Y  RLT +  +    G   E+A 
Sbjct: 100 ALKARHVGADRVKEARLQTLKSEFDAMRMKDEESLDQYVGRLTGMSVRYGNLGGSLEDAA 159

Query: 124 SVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDER----IGGSKENAEHVL 183
            VKK   +VP +++H+ + IEQF DL+ M  E+ +GRLKAY+ER    +G  +  A  VL
Sbjct: 160 LVKKLFDTVPGRYIHVIAGIEQFYDLQTMKFEDAVGRLKAYEERTRRGVGEGRSEAGQVL 219

Query: 184 LTQGEWKAKER------------SDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKS 243
           LTQ EW+A++R             D GG  RGRGR G  RG G G + D+    K+ DKS
Sbjct: 220 LTQAEWEARQRKSTGDGSGGSRSQDGGGRGRGRGRGGGGRG-GRGGQRDAASTGKR-DKS 279

Query: 244 KVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLT 303
            ++C+ C  +GHYA+ C  V+                KK E++AH    ++   EP +L 
Sbjct: 280 HIKCFKCHQMGHYANRCPGVE----------------KKKEEEAH--HVRAAPLEPTVLL 339

Query: 304 AQVCEVRTLGSPE-------LTEMALYEEKVVP-----GEIEKVNNIWFLDTGASNHMTG 363
            +  +   L  PE        TE+ L EEKV P     GE E  NN+W+LD GASNHM G
Sbjct: 340 VETVD---LEPPEQAPDQNLFTEVDL-EEKVTPELNFTGEEEPKNNVWYLDNGASNHMCG 399

Query: 364 CRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMI 379
            R  F ++ ++V+G V+        ++  G +    V K E +I
Sbjct: 400 DRLKFRDINQTVSGKVQ---NQTMRVQELGKLMQKQVVKQEMLI 416

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BLAST of CmoCh11G013010 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.8e-55
Identity = 144/363 (39.67%), Postives = 205/363 (56.47%), Query Frame = 1


Query: 26  SLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIE 85
           ++D R+D+ A + + Q+ PE++L  +A+K++AKE W  LKT  VGA+RV+EA++QTLK E
Sbjct: 58  AVDPRRDKKARSHLLQSQPEDLLMQVAKKRSAKEVWDCLKTRFVGADRVREARLQTLKGE 117

Query: 86  FEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQF 145
           F  M M+  ET+D YA R+T +  +    G    ++  VKK   +VP KF+ + + IEQF
Sbjct: 118 FGAMVMEPGETLDQYAGRITAMSVRHSALGSTLGDSAMVKKLFDTVPEKFVSLVAGIEQF 177

Query: 146 ADLKVMTMEEVIGRLKAYDERIGGSKENA------EHVLLTQGEWKAKERSDNG------ 205
            D+  M  EE +GRLKAY+ER+   K  A        VLLTQ EW+A  + + G      
Sbjct: 178 YDIDTMPFEEAVGRLKAYEERMRKKKAAAGGVTTDGQVLLTQAEWEAHFKKNGGESSPPQ 237

Query: 206 -------GHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKV 265
                  G  RG+G  GR RGRG G R  +   +  A             G    D   +
Sbjct: 238 KNKPSGEGAGRGQGGRGRGRGRGAGGRGGTPRGDSGAGS-----------GGGGRDKSHI 297

Query: 266 KCYNCQKIGHYASDC-RSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELT--EM 325
           KC+NC++ GHY++ C   KK + +AHLA+T  ++  PALL A   +V    S  L   E 
Sbjct: 298 KCFNCEEYGHYSNQCPHPKKKKGEAHLAQT--EDAGPALLLAVTEDVPERASCGLVVREQ 357

Query: 326 ALYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGR 367
            ++ + ++        ++WFLD GASNHMTG RS F EL ES+TG VKFGD S  +IKG+
Sbjct: 358 RVWPKLLLADAGGHAGDVWFLDNGASNHMTGDRSKFRELDESITGRVKFGDASTVQIKGK 407

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BLAST of CmoCh11G013010 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.9e-55
Identity = 142/361 (39.34%), Postives = 206/361 (57.06%), Query Frame = 1


Query: 26  SLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIE 85
           ++D R+D+ A + + Q++PE++L  +A+K++AKE W  LKT  VGA+RV+EA++QTLK E
Sbjct: 58  AVDPRRDKKAKSHLLQSLPEDLLMQVAKKRSAKEVWDCLKTRFVGADRVREARLQTLKGE 117

Query: 86  FEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQF 145
           F  M M+  ET+D YA R+T +  +    G    ++  VKK   +VP KF+ + + IEQF
Sbjct: 118 FGAMVMEPGETLDQYAGRITAMSVRHSALGSTLSDSAMVKKLFDTVPEKFISLVAGIEQF 177

Query: 146 ADLKVMTMEEVIGRLKAYDERIGGSKENA------EHVLLTQGEWKAKERSD-------- 205
            ++  M  EE +GRLKAY+ER+   K  A        VLLTQ EW+A+ R D        
Sbjct: 178 YEIDNMPFEEAVGRLKAYEERVRKKKAAAGGVTADGQVLLTQAEWEARFRKDGSESSSPQ 237

Query: 206 -----NGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKV 265
                + G +R +G  GR RGRG G    S  +   A  S          G    D   +
Sbjct: 238 KNKPPSDGGNRAQGGRGRGRGRGGGGGRSSAPRNSGAGGS----------GGGGRDKSHI 297

Query: 266 KCYNCQKIGHYASDC-RSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMAL 325
           KCYNC++ GHY++ C   KK + +AHLA+T  D+  PALL A V E        + E  +
Sbjct: 298 KCYNCEEFGHYSTQCPHPKKKKVEAHLAQT--DDANPALLLA-VTEDEPASGLVVHEERV 357

Query: 326 YEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGD 367
           + + ++        +IWFLD GASNHMTG R+ F +L  S+TG+VKFGD S  +I+G+G 
Sbjct: 358 WPQLLLADSGAATGDIWFLDNGASNHMTGDRAKFRDLDVSITGSVKFGDASTVKIQGKGS 405

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BLAST of CmoCh11G013010 vs. TrEMBL
Match: A0A0D3A1E3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 138/361 (38.23%), Postives = 214/361 (59.28%), Query Frame = 1


Query: 28  DERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIEFE 87
           DE K+ +A+A ++Q+IPE ++  + +  T K  W+ +++ ++GAERVK A++ TL  EF+
Sbjct: 60  DEDKNDLAIALLFQSIPESLVLQVGDLGTPKLIWEAIQSRNLGAERVKSARLLTLMNEFD 119

Query: 88  IMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQFAD 147
            + M++++TID +  +++E+V+K  T G   E    VKK L S+PPKF+ + +++EQ  D
Sbjct: 120 RLKMEDTDTIDAFTEKISELVSKASTLGQIIEGPKVVKKLLNSLPPKFIFMTASLEQMLD 179

Query: 148 LKVMTMEEVIGRLKAYDERIGG--SKENAEHVLLTQGEWKAKER-SDNGGHSRG--RGRS 207
           L+  + E++IGRLKAY+ERI G    E    +L +  E    ++ +DN G  RG  RGR 
Sbjct: 180 LETTSFEDIIGRLKAYEERIKGYTPVEQQGSLLYSNTEKSYDQKGTDNTGRGRGQNRGRG 239

Query: 208 GRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCR 267
              RGRG GR N     ++K D S                  ++ CYNC+K GH+AS C 
Sbjct: 240 RGNRGRGRGRSNYGERNKEKRDYS------------------QIVCYNCKKKGHFASVCT 299

Query: 268 SKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIE---KVN 327
            KK ED+  L +T+++  E AL   +V             + L EEKV+P E+E   K +
Sbjct: 300 EKKAEDE--LNKTETETAEVALYMLEV-------------VFLNEEKVMPKELEADKKED 359

Query: 328 NIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMID 381
            +W+LD GASNHMTG RS+FSE+ E++ G VKFGDGS  +I+G+G +   +    +KM+ 
Sbjct: 360 GVWYLDNGASNHMTGQRSYFSEINENIKGKVKFGDGSYVDIRGKGSIMFEAKTGEQKMLT 387

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BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|923695303|ref|XP_013657908.1| (PREDICTED: uncharacterized protein LOC106362576 [Brassica napus])

HSP 1 Score: 230.3 bits (586), Expect = 8.0e-57
Identity = 135/351 (38.46%), Postives = 211/351 (60.11%), Query Frame = 1


Query: 25  DSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKI 84
           ++++++K+ MA+A ++Q+IPE ++  + +  TAK+ W+ +KT HVGAERVKEA++QTL  
Sbjct: 51  ETINDKKNNMAMALLFQSIPEVLILQVGKLDTAKKVWEAIKTRHVGAERVKEARLQTLMA 110

Query: 85  EFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVP-PKFLHIASAIE 144
           +F+ + MKE+ETID++A +L+E+ +K    G+  EE   VKKFL+S+P  K++HI +A+E
Sbjct: 111 DFDRLTMKETETIDEFAGKLSEISSKSAALGEDIEETKLVKKFLKSLPRKKYIHIVAALE 170

Query: 145 QFADLKVMTMEEVIGRLKAYDERIGG---SKENAEHVLLTQGEWKAKERSDNGGHSRGRG 204
           Q  DLK    E+++GRLKAY+ERI      KE+   +L    + +++   +N    RGRG
Sbjct: 171 QVLDLKTTDFEDIVGRLKAYEERIADEEEQKEDQSKLLYANNDQQSQRDFNNEYRGRGRG 230

Query: 205 RSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASD 264
           R G +RGRG GR N +              YN  + G+   D  KV C+ C K+GHY   
Sbjct: 231 R-GSYRGRGRGRYNGT--------------YNGANNGY--RDASKVTCFRCDKVGHYVMQ 290

Query: 265 CRSKKWE-DQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVN 324
           C  +  +  +   AET   ++   L+  +V             + L E K+VP   E  N
Sbjct: 291 CPDRLLKLQEVQEAETTETQEADELMMHEV-------------VYLNEGKIVPNNYEVNN 350

Query: 325 ---NIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVK 368
              N+W+LD GASNHM+G R +FS + +S+TG ++FGD S  +IKG+G ++
Sbjct: 351 SEDNVWYLDNGASNHMSGDRRYFSSIDDSITGKIRFGDDSRIDIKGKGIIE 371

[Close]

BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|721687640|ref|XP_010239308.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypodium distachyon])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 137/365 (37.53%), Postives = 219/365 (60.00%), Query Frame = 1


Query: 15  VGPIESTESLDSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERV 74
           V P  +T +  + + R D++ALAAI+  +P ++L  L  KK+AK+AW T+KT+H G ERV
Sbjct: 49  VDPGGNTYAKGAANYRIDRLALAAIHAVVPNDVLQHLKGKKSAKDAWDTIKTLHQGHERV 108

Query: 75  KEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPK 134
           +EA +QTL   +E + M E E +D +AAR+T +VN I   G+   E   V++FLR+  PK
Sbjct: 109 REANLQTLLRNYESLKMGEDEAVDVFAARVTTLVNGIRDLGETLIEISVVRRFLRTASPK 168

Query: 135 FLHIASAIEQFADLKVMTMEEVIGRLKAYDER---IGGSKENAEHVLLTQGEWKAKERSD 194
           ++ I ++IEQ  DLK +T+E+++G  KA+DER   + G  ++ EH+++T+ +W A     
Sbjct: 169 YIQIVTSIEQCVDLKTLTVEDLVGCYKAHDERLRMVFGDGKDDEHLMMTRAQWSAMAARK 228

Query: 195 NGGHSRGRGRSGRWRGRGHGRRN---DSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKC 254
            G  S   GR  + +G G  +         ++  A K K+             D +KVKC
Sbjct: 229 TGDSSSSSGRRDQAKGEGRAQAKKAPQGTEEKGAAPKKKI-------------DRKKVKC 288

Query: 255 YNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTE-----M 314
           +NC   GH+ S+CR K  +++A++A  + ++D+PALL  ++CE+   G  ++ E     +
Sbjct: 289 HNCGIYGHFKSECR-KPQKEKAYMA--REEDDDPALLMVEMCELMEKGQEKVIEEKSETV 348

Query: 315 ALYEEKVVPGEIEKV--NNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIK 367
            L E+KV   +  +V   N+W+LDTGASNHMTG ++ F+E   ++  +V+FGDGS   I+
Sbjct: 349 TLVEKKVYLHDKARVKAGNVWYLDTGASNHMTGDKTQFAEFNLAMGSSVRFGDGSTVAIQ 397

[Close]

BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|253759675|ref|XP_002488942.1| (hypothetical protein SORBIDRAFT_1475s002010 [Sorghum bicolor])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 150/404 (37.13%), Postives = 220/404 (54.46%), Query Frame = 1


Query: 4   EDEGLFACSRGVGPIESTESLDSLD-ERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQ 63
           ED+G++      G   +  + ++ + ++KD  A A + Q +P+++L  +A KKT KE W 
Sbjct: 40  EDQGVWDVMEPSGSTSAPTAAEAAEAKKKDTKAKAHLLQCLPDDLLMQVAGKKTGKEVWD 99

Query: 64  TLKTIHVGAERVKEAKIQTLKIEFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAY 123
            LK  HVGA+RVKEA++QTLK EF+ M MK+ E++D Y  RLT +  +    G   E+A 
Sbjct: 100 ALKARHVGADRVKEARLQTLKSEFDAMRMKDEESLDQYVGRLTGMSVRYGNLGGSLEDAA 159

Query: 124 SVKKFLRSVPPKFLHIASAIEQFADLKVMTMEEVIGRLKAYDER----IGGSKENAEHVL 183
            VKK   +VP +++H+ + IEQF DL+ M  E+ +GRLKAY+ER    +G  +  A  VL
Sbjct: 160 LVKKLFDTVPGRYIHVIAGIEQFYDLQTMKFEDAVGRLKAYEERTRRGVGEGRSEAGQVL 219

Query: 184 LTQGEWKAKER------------SDNGGHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKS 243
           LTQ EW+A++R             D GG  RGRGR G  RG G G + D+    K+ DKS
Sbjct: 220 LTQAEWEARQRKSTGDGSGGSRSQDGGGRGRGRGRGGGGRG-GRGGQRDAASTGKR-DKS 279

Query: 244 KVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRSKKWEDQAHLAETQSDEDEPALLT 303
            ++C+ C  +GHYA+ C  V+                KK E++AH    ++   EP +L 
Sbjct: 280 HIKCFKCHQMGHYANRCPGVE----------------KKKEEEAH--HVRAAPLEPTVLL 339

Query: 304 AQVCEVRTLGSPE-------LTEMALYEEKVVP-----GEIEKVNNIWFLDTGASNHMTG 363
            +  +   L  PE        TE+ L EEKV P     GE E  NN+W+LD GASNHM G
Sbjct: 340 VETVD---LEPPEQAPDQNLFTEVDL-EEKVTPELNFTGEEEPKNNVWYLDNGASNHMCG 399

Query: 364 CRSWFSELKESVTGTVKFGDGSLGEIKGRGDVKAASVKKTEKMI 379
            R  F ++ ++V+G V+        ++  G +    V K E +I
Sbjct: 400 DRLKFRDINQTVSGKVQ---NQTMRVQELGKLMQKQVVKQEMLI 416

[Close]

BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|922464861|ref|XP_013633028.1| (PREDICTED: uncharacterized protein LOC106338643 [Brassica oleracea var. oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55
Identity = 134/348 (38.51%), Postives = 205/348 (58.91%), Query Frame = 1


Query: 25  DSLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKI 84
           ++++++K+ MA+A ++Q+IPE ++  + +  TAK+ W+ +KT HVGAERVKEA++QTL  
Sbjct: 51  ETINDKKNNMAMALLFQSIPEVLILQVGKLDTAKKVWEAIKTRHVGAERVKEARLQTLMA 110

Query: 85  EFEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVP-PKFLHIASAIE 144
           +F+ + MKE+ETID++A +L+E+ +K    G+  EE   VKKFL+S+P  K++HI +A+E
Sbjct: 111 DFDRLTMKETETIDEFAGKLSEISSKSAALGEDIEETKLVKKFLKSLPRKKYIHIVAALE 170

Query: 145 QFADLKVMTMEEVIGRLKAYDERIGGSKENAEHVLLTQGEWKAKERSDNGGHSRGRGRSG 204
           Q  DLK    E+++GRLKAY+ER+   +E              KE    G   RGRGR G
Sbjct: 171 QVLDLKTTDFEDIVGRLKAYEERVADEEEQ-------------KEDQSKG---RGRGR-G 230

Query: 205 RWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKVKCYNCQKIGHYASDCRS 264
            +RGRG GR N +              YN  + G+   D  KV C+ C K+GHY   C  
Sbjct: 231 SYRGRGRGRYNGT--------------YNGANNGY--RDASKVTCFRCDKVGHYVMQCPD 290

Query: 265 KKWE-DQAHLAETQSDEDEPALLTAQVCEVRTLGSPELTEMALYEEKVVPGEIEKVN--- 324
           +  +  +   AET   ++   L+  +V             + L E K+VP   E  N   
Sbjct: 291 RLLKLQEVQEAETTETQEADELMMHEV-------------VYLNEGKIVPNNYEVNNSED 350

Query: 325 NIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGRGDVK 368
           N+W+LD GASNHM+G R +FS + +S+TG ++FGD S  +IKG+G ++
Sbjct: 351 NVWYLDNGASNHMSGDRRYFSSIDDSITGKIRFGDDSRIDIKGKGIIE 352

[Close]

BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55
Identity = 144/363 (39.67%), Postives = 205/363 (56.47%), Query Frame = 1


Query: 26  SLDERKDQMALAAIYQAIPEEMLFLLAEKKTAKEAWQTLKTIHVGAERVKEAKIQTLKIE 85
           ++D R+D+ A + + Q+ PE++L  +A+K++AKE W  LKT  VGA+RV+EA++QTLK E
Sbjct: 58  AVDPRRDKKARSHLLQSQPEDLLMQVAKKRSAKEVWDCLKTRFVGADRVREARLQTLKGE 117

Query: 86  FEIMNMKESETIDDYAARLTEVVNKIHTFGDKFEEAYSVKKFLRSVPPKFLHIASAIEQF 145
           F  M M+  ET+D YA R+T +  +    G    ++  VKK   +VP KF+ + + IEQF
Sbjct: 118 FGAMVMEPGETLDQYAGRITAMSVRHSALGSTLGDSAMVKKLFDTVPEKFVSLVAGIEQF 177

Query: 146 ADLKVMTMEEVIGRLKAYDERIGGSKENA------EHVLLTQGEWKAKERSDNG------ 205
            D+  M  EE +GRLKAY+ER+   K  A        VLLTQ EW+A  + + G      
Sbjct: 178 YDIDTMPFEEAVGRLKAYEERMRKKKAAAGGVTTDGQVLLTQAEWEAHFKKNGGESSPPQ 237

Query: 206 -------GHSRGRGRSGRWRGRGHGRRNDSFHQEKKADKSKVRCYNCQDLGHYASDCRKV 265
                  G  RG+G  GR RGRG G R  +   +  A             G    D   +
Sbjct: 238 KNKPSGEGAGRGQGGRGRGRGRGAGGRGGTPRGDSGAGS-----------GGGGRDKSHI 297

Query: 266 KCYNCQKIGHYASDC-RSKKWEDQAHLAETQSDEDEPALLTAQVCEVRTLGSPELT--EM 325
           KC+NC++ GHY++ C   KK + +AHLA+T  ++  PALL A   +V    S  L   E 
Sbjct: 298 KCFNCEEYGHYSNQCPHPKKKKGEAHLAQT--EDAGPALLLAVTEDVPERASCGLVVREQ 357

Query: 326 ALYEEKVVPGEIEKVNNIWFLDTGASNHMTGCRSWFSELKESVTGTVKFGDGSLGEIKGR 367
            ++ + ++        ++WFLD GASNHMTG RS F EL ES+TG VKFGD S  +IKG+
Sbjct: 358 RVWPKLLLADAGGHAGDVWFLDNGASNHMTGDRSKFRELDESITGRVKFGDASTVQIKGK 407

The following BLAST results are available for this feature:

BLAST of CmoCh11G013010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	8.7e-11	23.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmoCh11G013010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9DE89_ARUDO	1.3e-58	48.19	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
C6JSM1_SORBI	1.4e-55	37.13	Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s0020...	[more]
Q10RM4_ORYSJ	6.8e-55	39.67	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8BDZ6_ORYSI	8.9e-55	39.34	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
A0A0D3A1E3_BRAOL	2.0e-54	38.23	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmoCh11G013010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G013010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923695303\|ref\|XP_013657908.1\|	8.0e-57	38.46	PREDICTED: uncharacterized protein LOC106362576 [Brassica napus]	[more]
gi\|721687640\|ref\|XP_010239308.1\|	5.2e-56	37.53	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypo...	[more]
gi\|253759675\|ref\|XP_002488942.1\|	2.0e-55	37.13	hypothetical protein SORBIDRAFT_1475s002010 [Sorghum bicolor]	[more]
gi\|922464861\|ref\|XP_013633028.1\|	9.8e-55	38.51	PREDICTED: uncharacterized protein LOC106338643 [Brassica oleracea var. oleracea...	[more]
gi\|108706239\|gb\|ABF94034.1\|	9.8e-55	39.67	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G013010.1	CmoCh11G013010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 221..264 score: 2.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 229..245 score: 4.1E-6coord: 247..262 score: 8.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 247..263 score: 7.2E-5coord: 229..245 score: 8.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 247..263 score: 9.916coord: 229..245 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 222..265 score: 2.09
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 304..392 score: 6.7E-85coord: 264..281 score: 6.7E-85coord: 18..246 score: 6.7
None	No IPR available	PANTHER	PTHR11439:SF172	SUBFAMILY NOT NAMED	coord: 304..392 score: 6.7E-85coord: 18..246 score: 6.7E-85coord: 264..281 score: 6.7
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 29..166 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G013010	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G013010	Melon (DHL92) v3.6.1	cmomedB122
CmoCh11G013010	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G013010	Cucumber (Chinese Long) v3	cmocucB0111
CmoCh11G013010	Watermelon (97103) v2	cmowmbB098
CmoCh11G013010	Wax gourd	cmowgoB0157
CmoCh11G013010	Wax gourd	cmowgoB0165
CmoCh11G013010	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G013010	Cucurbita maxima (Rimu)	cmacmoB115
CmoCh11G013010	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G013010	Wild cucumber (PI 183967)	cmocpiB102
CmoCh11G013010	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G013010	Cucumber (Chinese Long) v2	cmocuB100
CmoCh11G013010	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G013010	Watermelon (Charleston Gray)	cmowcgB100
CmoCh11G013010	Watermelon (97103) v1	cmowmB085
CmoCh11G013010	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G013010	Bottle gourd (USVL1VR-Ls)	cmolsiB122
CmoCh11G013010	Bottle gourd (USVL1VR-Ls)	cmolsiB136
CmoCh11G013010	Cucumber (Gy14) v2	cgybcmoB048