CmoCh11G013000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G013000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	Cmo_Chr11 : 8870792 .. 8872931 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTTGGGTCGAGGAGCAGTCACACTCTGGTTCGGATCGACTATTGTAGAAGGCTATTGAGCCGGGCTGGTTGTTGGGCCTCGATTTACTGGACTGGCCCGCATGTATTTGGGTTGCAGGCTGGTTCGATTGGACCGTGGGTCTGGTCTCAGGTTGGTTCAGCTGAACCGTGGCTTCTGGGCTGGTTTGAGGTTTGGGCTGCTGTAGTTGGGCTTCGATTTCACGGGCTGGATTTAGATTGGGTTTGAGCCTTGGGCCTGGATATTTTGGTTCTGGCTGACCCGGATCCGACGGATCCTTCTTCCTTACCCGACTTCTGCGCGATTTTTCAGCGCGTTTTATCTCTTCTTCCCGCGGCATTTCCGTTGTCGATTTCGATCATCTTTCTTCATTTTCCTCTTTGTTTGTCGTCCTTCTTTCCTTCCTCGAAGTTTTGTGGCCTAAAAGTTCCTAAAACCACAGATGTAAGAACGTTTAGGAAAACCTAATTTTTCGACCTCGGTTACTGATGACGGCGCTTATGAAAAGGCATAAAACGTACCTTGAGTTATTGCTCTATCATTAGGGATCCTTCTCGTGGTGCTAACCGAGCGTTTGGCTTCGACTTTTGGGGGGTTTGGGACTCGTCGGAGAAATTAGAAACTTGCCGACGTTATCTAAAATCTCTCTTTCTCTCTCTCTCTCGTATTTTCTTTCTTTTCTCTGTTTGCAGGTATTCTGATAGGTTCTGGGAGTTGTGGGCTTAAGGCTGAGCGAGGTGTGGCTGTCATTTTGCGTGGGATTCGCGAAACTCGGTCGTCGCTGGAAAACTCGCGAGTTTTCTAGCGACTGAGTTTTTTTTTTTTCATTTTCATTTTCATTTTCTTTTTCTTTTTCTTAGGTTGTTACATTATTTACCCCTAAAAAGAACTTTCGTCCTCAAAAATCTCAAACTCTTGTACTAGCTCGGGGTATTTTTGTCACGCCAAAAAAAAAAAAAAAAAAAAGGCCAAGTCAACTGAGGGGCAAAGATGTCATTTTGCCCCTCCAGCTCTAATAGGGGTCCGAGGAGAACCTCGTCAGATCCCCTACAAAAGATATTATTGGTGGTCTGGAATGAAGAGGGACATAGCGGATTTCGTAAGCCGTTGCTTGACCTACCACTAGGTGAAGGCCCCGAGGCAGCGCCCAGCAGGATTGCTACAGCCCCTAGATGTTCCTCAGTGGAAATGGGAAGCAGTCTGTATGGATTTCGTCTCGGGTTTTCCAAAGACAAAGCAGGGTTTCAACGTCATGTGGGTTGTTGTGGACAGACTGACCAAGACGGCCCACTTCATTCTAGGAAAGTCTACATATCGAGTGGATCGGTGGGCTCAATTATACATTAAGGAGATAGTACGCCTGCACGGGATACTAGTGTCCATAGTATCAGACCGGGACATCAGGTTCACCTCTCAGTTCTGGAGAAGTCTCCAGAAAGCACTAGGAACTCAGTTGAGGTTCAGTACAGCGTTCCATCCTCAAACGGACGGACAGACTGAAAGGCTGAACCAGATTTTAGAGGATATGTTGCAAGCCTGTTCCTTAGATTTCTCTAGGTGCTGGGACGAACATCTGTCTTTAATGGAGTTTGCCTATAATAATAATTATCAAGCGACCATTCAGATGACCCCCTTTGAGGCACTGTATGGGCGTAGGTGTCGAACACTAGTGTTTTGGGAAGAGGTAGGCACGCAGCAACTACTGGGACCAGAGTTGGTCCAAGTCACCAACGCAGCGGAGCAGAAAATCAAGCAGAGGATACTCACCGCACAGAGCCGACAGAAAAGCTATGCAGATATGTGTAGAAGGGACCTCGAATTTGAGGTGGGTGACCACGTGTTCCTGAAGGTAGCCCCTATGAGGGGGGTGTTGAGGTTCGGAAAGAAAGGGAAATTGAGCCCAAGGTTCATAGGCCCCTTCGAGATTTTAGAAAGAGTTGGGGCTGTGGCTTACAGAATTGTCCTACCACCGAACCTTGTCACCGTGCACAATGTGTTCCACGTATCCATGCTGCGAAAGTACACTCCAGACCCTACTCATGTAATCGAGCATGAGATGCTTCCTCTTCGGGAAGATTTATCTTACGAGGAGAAGCCTAGCAGAATTTTGGCTTGA

mRNA sequence

ATGTGTGTTGGGTCGAGGAGCAGTCACACTCTGGTTCGGATCGACTATTGTAGAAGGCTATTGAGCCGGGCTGGTTGTTGGGCCTCGATTTACTGGACTGGCCCGCATGTATTTGGGTTGCAGGCTGGTTCGATTGGACCGTGGGTCTGGTCTCAGGTTGGTTCAGCTGAACCGTGGCTTCTGGGCTGGTTTGAGGTGAAGGCCCCGAGGCAGCGCCCAGCAGGATTGCTACAGCCCCTAGATGTTCCTCAGTGGAAATGGGAAGCAGTCTGTATGGATTTCGTCTCGGGTTTTCCAAAGACAAAGCAGGGTTTCAACGTCATGTGGGTTGTTGTGGACAGACTGACCAAGACGGCCCACTTCATTCTAGGAAAGTCTACATATCGAGTGGATCGGTGGGCTCAATTATACATTAAGGAGATAGTACGCCTGCACGGGATACTAGTGTCCATAGTATCAGACCGGGACATCAGGTTCACCTCTCAGTTCTGGAGAAGTCTCCAGAAAGCACTAGGAACTCAGTTGAGGTTCAGTACAGCGTTCCATCCTCAAACGGACGGACAGACTGAAAGGCTGAACCAGATTTTAGAGGATATGTTGCAAGCCTGTTCCTTAGATTTCTCTAGGTGCTGGGACGAACATCTGTCTTTAATGGAGTTTGCCTATAATAATAATTATCAAGCGACCATTCAGATGACCCCCTTTGAGGCACTGTATGGGCGTAGGTGTCGAACACTAGTGTTTTGGGAAGAGGTAGGCACGCAGCAACTACTGGGACCAGAGTTGGTCCAAGTCACCAACGCAGCGGAGCAGAAAATCAAGCAGAGGATACTCACCGCACAGAGCCGACAGAAAAGCTATGCAGATATGTGTAGAAGGGACCTCGAATTTGAGGTGGGTGACCACGTGTTCCTGAAGGTAGCCCCTATGAGGGGGGTGTTGAGGTTCGGAAAGAAAGGGAAATTGAGCCCAAGGTTCATAGGCCCCTTCGAGATTTTAGAAAGAGTTGGGGCTGTGGCTTACAGAATTGTCCTACCACCGAACCTTGTCACCGTGCACAATGTGTTCCACGTATCCATGCTGCGAAAGTACACTCCAGACCCTACTCATGTAATCGAGCATGAGATGCTTCCTCTTCGGGAAGATTTATCTTACGAGGAGAAGCCTAGCAGAATTTTGGCTTGA

Coding sequence (CDS)

ATGTGTGTTGGGTCGAGGAGCAGTCACACTCTGGTTCGGATCGACTATTGTAGAAGGCTATTGAGCCGGGCTGGTTGTTGGGCCTCGATTTACTGGACTGGCCCGCATGTATTTGGGTTGCAGGCTGGTTCGATTGGACCGTGGGTCTGGTCTCAGGTTGGTTCAGCTGAACCGTGGCTTCTGGGCTGGTTTGAGGTGAAGGCCCCGAGGCAGCGCCCAGCAGGATTGCTACAGCCCCTAGATGTTCCTCAGTGGAAATGGGAAGCAGTCTGTATGGATTTCGTCTCGGGTTTTCCAAAGACAAAGCAGGGTTTCAACGTCATGTGGGTTGTTGTGGACAGACTGACCAAGACGGCCCACTTCATTCTAGGAAAGTCTACATATCGAGTGGATCGGTGGGCTCAATTATACATTAAGGAGATAGTACGCCTGCACGGGATACTAGTGTCCATAGTATCAGACCGGGACATCAGGTTCACCTCTCAGTTCTGGAGAAGTCTCCAGAAAGCACTAGGAACTCAGTTGAGGTTCAGTACAGCGTTCCATCCTCAAACGGACGGACAGACTGAAAGGCTGAACCAGATTTTAGAGGATATGTTGCAAGCCTGTTCCTTAGATTTCTCTAGGTGCTGGGACGAACATCTGTCTTTAATGGAGTTTGCCTATAATAATAATTATCAAGCGACCATTCAGATGACCCCCTTTGAGGCACTGTATGGGCGTAGGTGTCGAACACTAGTGTTTTGGGAAGAGGTAGGCACGCAGCAACTACTGGGACCAGAGTTGGTCCAAGTCACCAACGCAGCGGAGCAGAAAATCAAGCAGAGGATACTCACCGCACAGAGCCGACAGAAAAGCTATGCAGATATGTGTAGAAGGGACCTCGAATTTGAGGTGGGTGACCACGTGTTCCTGAAGGTAGCCCCTATGAGGGGGGTGTTGAGGTTCGGAAAGAAAGGGAAATTGAGCCCAAGGTTCATAGGCCCCTTCGAGATTTTAGAAAGAGTTGGGGCTGTGGCTTACAGAATTGTCCTACCACCGAACCTTGTCACCGTGCACAATGTGTTCCACGTATCCATGCTGCGAAAGTACACTCCAGACCCTACTCATGTAATCGAGCATGAGATGCTTCCTCTTCGGGAAGATTTATCTTACGAGGAGAAGCCTAGCAGAATTTTGGCTTGA

Homology

[Close]

BLAST of CmoCh11G013000 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-39
Identity = 99/300 (33.00%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 67   KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKS 126
            K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    
Sbjct: 964  KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTK 1023

Query: 127  TYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTD 186
            +   ++ A+++ + ++   G    I++D D  FTSQ W+         ++FS  + PQTD
Sbjct: 1024 SITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1083

Query: 187  GQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTL 246
            GQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    
Sbjct: 1084 GQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPA 1143

Query: 247  VFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFL 306
            +   E+ +      E  Q T    Q +K+ + T   + K Y DM  +++ EF+ GD V +
Sbjct: 1144 LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV 1203

Query: 307  KVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY 365
            K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Sbjct: 1204 K-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh11G013000 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-39
Identity = 99/300 (33.00%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 67   KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKS 126
            K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    
Sbjct: 964  KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTK 1023

Query: 127  TYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTD 186
            +   ++ A+++ + ++   G    I++D D  FTSQ W+         ++FS  + PQTD
Sbjct: 1024 SITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1083

Query: 187  GQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTL 246
            GQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    
Sbjct: 1084 GQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPA 1143

Query: 247  VFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFL 306
            +   E+ +      E  Q T    Q +K+ + T   + K Y DM  +++ EF+ GD V +
Sbjct: 1144 LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV 1203

Query: 307  KVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY 365
            K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Sbjct: 1204 K-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh11G013000 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-39
Identity = 99/300 (33.00%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 67   KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKS 126
            K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    
Sbjct: 964  KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTK 1023

Query: 127  TYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTD 186
            +   ++ A+++ + ++   G    I++D D  FTSQ W+         ++FS  + PQTD
Sbjct: 1024 SITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1083

Query: 187  GQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTL 246
            GQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    
Sbjct: 1084 GQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPA 1143

Query: 247  VFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFL 306
            +   E+ +      E  Q T    Q +K+ + T   + K Y DM  +++ EF+ GD V +
Sbjct: 1144 LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV 1203

Query: 307  KVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY 365
            K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Sbjct: 1204 K-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh11G013000 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-39
Identity = 99/300 (33.00%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 67   KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKS 126
            K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    
Sbjct: 964  KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTK 1023

Query: 127  TYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTD 186
            +   ++ A+++ + ++   G    I++D D  FTSQ W+         ++FS  + PQTD
Sbjct: 1024 SITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1083

Query: 187  GQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTL 246
            GQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    
Sbjct: 1084 GQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPA 1143

Query: 247  VFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFL 306
            +   E+ +      E  Q T    Q +K+ + T   + K Y DM  +++ EF+ GD V +
Sbjct: 1144 LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV 1203

Query: 307  KVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY 365
            K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Sbjct: 1204 K-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh11G013000 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.4e-39
Identity = 99/300 (33.00%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 67   KAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILGKS 126
            K+   +P G LQP+   +  WE++ MDF++  P++  G+N ++VVVDR +K A  +    
Sbjct: 964  KSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTK 1023

Query: 127  TYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQTD 186
            +   ++ A+++ + ++   G    I++D D  FTSQ W+         ++FS  + PQTD
Sbjct: 1024 SITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1083

Query: 187  GQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCRTL 246
            GQTER NQ +E +L+         W +H+SL++ +YNN   +  QMTPFE ++  R    
Sbjct: 1084 GQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPA 1143

Query: 247  VFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDL-EFEVGDHVFL 306
            +   E+ +      E  Q T    Q +K+ + T   + K Y DM  +++ EF+ GD V +
Sbjct: 1144 LSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV 1203

Query: 307  KVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTV-HNVFHVSMLRKY 365
            K     G L   K  KL+P F GPF +L++ G   Y + LP ++  +  + FHVS L KY
Sbjct: 1204 K-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh11G013000 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 2.2e-140
Identity = 238/330 (72.12%), Postives = 284/330 (86.06%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKAPRQ+PAGLLQPL +P+WKWE V MDF++G P+T +GF V+WVVVDRLTK+AHF+ G
Sbjct: 550 QVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG 609

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           KSTY   +WAQLY+ EIVRLHG+ VSIVSDRD RFTS+FW+ LQ A+GT+L FSTAFHPQ
Sbjct: 610 KSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ 669

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQTERLNQ+LEDML+AC+L+F   WD HL LMEFAYNN+YQATI M PFEALYGR CR
Sbjct: 670 TDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCR 729

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + V W EVG Q+L+GPELVQ TN A QKI+ R+ TAQSRQKSYAD+ R+DLEFEVGD VF
Sbjct: 730 SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVF 789

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKVAPM+GVLRF ++GKLSPRF+GPFEILER+G VAYR+ LPP+L TVH+VFHVSMLRKY
Sbjct: 790 LKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKY 849

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRILA 395
            PDP+HV+++E L + E+LSY E+P  +LA
Sbjct: 850 VPDPSHVVDYEPLEIDENLSYVEQPVEVLA 879

[Close]

BLAST of CmoCh11G013000 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.5e-125
Identity = 216/329 (65.65%), Postives = 271/329 (82.37%), Query Frame = 1


Query: 65   EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
            +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 1074 QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 1133

Query: 125  KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
            K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 1134 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 1193

Query: 185  TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
            TDGQ+ER  Q LE ML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 1194 TDGQSERTIQTLEAMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 1253

Query: 245  TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
            + + W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RRDLEF+VGDHVF
Sbjct: 1254 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVF 1313

Query: 305  LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
            LKV+P +GV+RFGKKGKLSPR+IGPFEILE+VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 1314 LKVSPTKGVMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 1373

Query: 365  TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
             PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 1374 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 1402

[Close]

BLAST of CmoCh11G013000 vs. TrEMBL
Match: A0A061FXC6_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 2.6e-125
Identity = 215/329 (65.35%), Postives = 271/329 (82.37%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 75  QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 134

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 135 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 194

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 195 TDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 254

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + + W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RR LEF+VGDHVF
Sbjct: 255 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVF 314

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV+P +G++RFGKKGKLSPR+IGPFEILE+VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 315 LKVSPTKGIMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 374

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 375 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 403

[Close]

BLAST of CmoCh11G013000 vs. TrEMBL
Match: A0A061FS42_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044868 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 3.4e-125
Identity = 216/329 (65.65%), Postives = 270/329 (82.07%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 30  QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 89

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 90  KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 149

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           T GQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 150 TGGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 209

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + V W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RRDLEF+VGDHVF
Sbjct: 210 SPVGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVF 269

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV P +GV+RFGKKGKLSPR+IGPFEIL++VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 270 LKVLPTKGVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 329

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 330 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 358

[Close]

BLAST of CmoCh11G013000 vs. TrEMBL
Match: A0A061EWB7_THECC (Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_023662 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 4.5e-125
Identity = 214/329 (65.05%), Postives = 270/329 (82.07%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 148 QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 207

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 208 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 267

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 268 TDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 327

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + + W EVG ++LLGPELVQ        I+QR+LTAQSR KSYAD  RRDLEF+VGDHVF
Sbjct: 328 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVF 387

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV+P +GV+RFGKKGKLSPR+IGPFEIL++VG VAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 388 LKVSPTKGVMRFGKKGKLSPRYIGPFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKY 447

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 448 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 476

[Close]

BLAST of CmoCh11G013000 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 506.9 bits (1304), Expect = 3.2e-140
Identity = 238/330 (72.12%), Postives = 284/330 (86.06%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKAPRQ+PAGLLQPL +P+WKWE V MDF++G P+T +GF V+WVVVDRLTK+AHF+ G
Sbjct: 550 QVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG 609

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           KSTY   +WAQLY+ EIVRLHG+ VSIVSDRD RFTS+FW+ LQ A+GT+L FSTAFHPQ
Sbjct: 610 KSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ 669

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQTERLNQ+LEDML+AC+L+F   WD HL LMEFAYNN+YQATI M PFEALYGR CR
Sbjct: 670 TDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCR 729

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + V W EVG Q+L+GPELVQ TN A QKI+ R+ TAQSRQKSYAD+ R+DLEFEVGD VF
Sbjct: 730 SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVF 789

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKVAPM+GVLRF ++GKLSPRF+GPFEILER+G VAYR+ LPP+L TVH+VFHVSMLRKY
Sbjct: 790 LKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKY 849

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRILA 395
            PDP+HV+++E L + E+LSY E+P  +LA
Sbjct: 850 VPDPSHVVDYEPLEIDENLSYVEQPVEVLA 879

[Close]

BLAST of CmoCh11G013000 vs. NCBI nr
Match: gi|590649404|ref|XP_007032400.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 457.6 bits (1176), Expect = 2.2e-125
Identity = 216/329 (65.65%), Postives = 271/329 (82.37%), Query Frame = 1


Query: 65   EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
            +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 1074 QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 1133

Query: 125  KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
            K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 1134 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 1193

Query: 185  TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
            TDGQ+ER  Q LE ML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 1194 TDGQSERTIQTLEAMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 1253

Query: 245  TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
            + + W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RRDLEF+VGDHVF
Sbjct: 1254 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVF 1313

Query: 305  LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
            LKV+P +GV+RFGKKGKLSPR+IGPFEILE+VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 1314 LKVSPTKGVMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 1373

Query: 365  TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
             PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 1374 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 1402

[Close]

BLAST of CmoCh11G013000 vs. NCBI nr
Match: gi|590667202|ref|XP_007037177.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 456.8 bits (1174), Expect = 3.7e-125
Identity = 215/329 (65.35%), Postives = 271/329 (82.37%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 75  QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 134

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 135 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 194

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 195 TDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 254

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + + W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RR LEF+VGDHVF
Sbjct: 255 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVF 314

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV+P +G++RFGKKGKLSPR+IGPFEILE+VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 315 LKVSPTKGIMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 374

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 375 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 403

[Close]

BLAST of CmoCh11G013000 vs. NCBI nr
Match: gi|590568709|ref|XP_007010873.1| (Uncharacterized protein TCM_044868 [Theobroma cacao])

HSP 1 Score: 456.4 bits (1173), Expect = 4.9e-125
Identity = 216/329 (65.65%), Postives = 270/329 (82.07%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 30  QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 89

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 90  KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 149

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           T GQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 150 TGGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 209

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + V W EVG ++LLGPELVQ        I+QR+LTAQSRQKSYAD  RRDLEF+VGDHVF
Sbjct: 210 SPVGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVF 269

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV P +GV+RFGKKGKLSPR+IGPFEIL++VGAVAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 270 LKVLPTKGVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHVSMLRKY 329

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 330 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 358

[Close]

BLAST of CmoCh11G013000 vs. NCBI nr
Match: gi|590633659|ref|XP_007028165.1| (Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao])

HSP 1 Score: 456.1 bits (1172), Expect = 6.4e-125
Identity = 214/329 (65.05%), Postives = 270/329 (82.07%), Query Frame = 1


Query: 65  EVKAPRQRPAGLLQPLDVPQWKWEAVCMDFVSGFPKTKQGFNVMWVVVDRLTKTAHFILG 124
           +VKA  Q+PAGLLQPL VP+WKWE + MDFV+G P+T  G++ +W+VVDRLTK+AHF+  
Sbjct: 148 QVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPV 207

Query: 125 KSTYRVDRWAQLYIKEIVRLHGILVSIVSDRDIRFTSQFWRSLQKALGTQLRFSTAFHPQ 184
           K+TY   ++A++Y+ EIVRLHGI +SIVSDR  +FTS+FW  LQ+ALGT+L FSTAFHPQ
Sbjct: 208 KTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQ 267

Query: 185 TDGQTERLNQILEDMLQACSLDFSRCWDEHLSLMEFAYNNNYQATIQMTPFEALYGRRCR 244
           TDGQ+ER  Q LEDML+AC +D    W+++L L+EFAYNN++Q +IQM PFEALYGRRCR
Sbjct: 268 TDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCR 327

Query: 245 TLVFWEEVGTQQLLGPELVQVTNAAEQKIKQRILTAQSRQKSYADMCRRDLEFEVGDHVF 304
           + + W EVG ++LLGPELVQ        I+QR+LTAQSR KSYAD  RRDLEF+VGDHVF
Sbjct: 328 SPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVF 387

Query: 305 LKVAPMRGVLRFGKKGKLSPRFIGPFEILERVGAVAYRIVLPPNLVTVHNVFHVSMLRKY 364
           LKV+P +GV+RFGKKGKLSPR+IGPFEIL++VG VAYR+ LPP+L  +H VFHVSMLRKY
Sbjct: 388 LKVSPTKGVMRFGKKGKLSPRYIGPFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKY 447

Query: 365 TPDPTHVIEHEMLPLREDLSYEEKPSRIL 394
            PDP+HVI +E + L++DL+YEE+P  IL
Sbjct: 448 NPDPSHVIRYETIQLQDDLTYEEQPVAIL 476

The following BLAST results are available for this feature:

BLAST of CmoCh11G013000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	5.4e-39	33.00	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF212_SCHPO	5.4e-39	33.00	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	5.4e-39	33.00	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF22_SCHPO	5.4e-39	33.00	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	5.4e-39	33.00	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh11G013000 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KB0_CUCME	2.2e-140	72.12	Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061EEG7_THECC	1.5e-125	65.65	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061FXC6_THECC	2.6e-125	65.35	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV...	[more]
A0A061FS42_THECC	3.4e-125	65.65	Uncharacterized protein OS=Theobroma cacao GN=TCM_044868 PE=4 SV=1	[more]
A0A061EWB7_THECC	4.5e-125	65.05	Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CmoCh11G013000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G013000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|28558781\|gb\|AAO45752.1\|	3.2e-140	72.12	pol protein [Cucumis melo subsp. melo]	[more]
gi\|590649404\|ref\|XP_007032400.1\|	2.2e-125	65.65	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590667202\|ref\|XP_007037177.1\|	3.7e-125	65.35	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590568709\|ref\|XP_007010873.1\|	4.9e-125	65.65	Uncharacterized protein TCM_044868 [Theobroma cacao]	[more]
gi\|590633659\|ref\|XP_007028165.1\|	6.4e-125	65.05	Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G013000.1	CmoCh11G013000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 88..199 score: 1.9
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 79..242 score: 16
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 87..244 score: 3.1
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 80..238 score: 2.53
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 65..393 score: 1.5E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 65..393 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G013000	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G013000	Bottle gourd (USVL1VR-Ls)	cmolsiB122
CmoCh11G013000	Bottle gourd (USVL1VR-Ls)	cmolsiB136
CmoCh11G013000	Cucumber (Gy14) v2	cgybcmoB048
CmoCh11G013000	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G013000	Melon (DHL92) v3.6.1	cmomedB122
CmoCh11G013000	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G013000	Cucumber (Chinese Long) v3	cmocucB0111
CmoCh11G013000	Watermelon (97103) v2	cmowmbB098
CmoCh11G013000	Wax gourd	cmowgoB0157
CmoCh11G013000	Wax gourd	cmowgoB0165
CmoCh11G013000	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G013000	Cucurbita maxima (Rimu)	cmacmoB115
CmoCh11G013000	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G013000	Wild cucumber (PI 183967)	cmocpiB102
CmoCh11G013000	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G013000	Cucumber (Chinese Long) v2	cmocuB100
CmoCh11G013000	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G013000	Watermelon (Charleston Gray)	cmowcgB100
CmoCh11G013000	Watermelon (97103) v1	cmowmB085