CmoCh11G012570 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Flap endonuclease 1) (3.-.-.-)
LocationCmo_Chr11 : 8014552 .. 8020104 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTAAGTTTTGCACACTAAATGAGTGTGTACCTGGATTTTTTTCCTTTTTTACCTGGGTCCTTCGGTGCTTTAATTCTTACATTCATTTTTAATTAATAAGAGGGGCTTGTTCTCAAAGTTTGTATATATTTCAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGGTGATTTGTCTCCATCTTAATTTGGCTATTTACTTATCTATAGGAAATCAAGTTATAAATTATAGCTCGTATATATTTATAGCTGTATTTTCTCTTTTCCTTATCGGTTTAGATTGATTGCATTTTTTTTGCTCATCTAATTGGGCGTCTCTTTGTATGAATCTGATTCTTCTCTACTCTATGAAATATAAAAAATATTATTGTTCATAGATAGCTTCATGGTATTAGAGTTATGAAACTATTCAATTTGGAAAGGACATCACCCTAAAAAGGTGAAGTTCTTCCTTTGGAAAATAGCGGTTTAGCACAAGTGAAAATCTTCAAAATAGAAAGCCCTACATGACCCTATTTCCAAATTGGTGTCCATTATGCAAGAAAGGAAACGAGTCACAAAGCCACTTATTTATGCAATGCACATATGCTCAGAATTTGTAGACAACGATTCTCAATATAATCAGAAGGTATCTCAGATTTCCTAGGGAGAGAAATAATCTATTGGACATGACCTTAACGTACCACCCCTTCAAGAATCCAAAAGCCCTACTATGGAAAACTTAATCATGACTTTTTTTTGGAACCTGTGGAAAAAATTAAATAAAAGAATATTTGTGGAAAAGACATAGACTTATACAAAACTCTTCGTCAATGTTGTTTACCAAGCTATATCTTGGTGTAAATGGTCTAATATTTTTATTTCCTATACTTATACCTCCCTCATAAGAGAATTACATGAATTACATGTCACTTTTATAAGAGAGAGACTAACTAAATCTAAATTAATAGATAATCTAAATAAGTCTCTAGATACTAGGTAATCTAAATTTTAATAAATTCAACCCGATAAATTAGGGAGGTCAAGTACTTGGTTCTCCTATTGACCGTAAGTCGAGATCAGAGATTGTTCCAGTCACTTGGCATAGTAAGGAACAATTAGTTGTAGCTTGAAGTACTACTGAAGTTGAGTTTCGATCACTAGTTCATGGGATTTGTGAAGGAATTTAGTTAAAAGGCCTTCTCATTGAACTAAAGGTCAAGATAGAAGACATCACAGAATTACCGTGTGATAACCAATCAATCATAGTTATTGCAATGAATACAATACACCATGACGGAATAAAGAAGGTCGAGATAGATTGACACTTCGTCAGTGAGAAATTGAGACAAACACTATTACACTGAGATATGTACCTTCCCAACAAGTTGCAGATTTATTAACTAACGCTTTACAACGAATTCATCTTGATGGTTTAATTTCCAAGCTTGGCGTGACAAGCATGTACTATCCAACTTGAGGGGAGTGTAGAAAATCAAGCTGTGAGTCAGGGCTTTATGTTTGGGATTGTTTCCGTGTATATGTTTATAGTTGTATTTTTCTTTTCCTTATAGGTTTAGATTAGTAGTTTGCTTATTTGATTCTCTTTGTATAAATCTGGTTTTTCTCCACTCAATCAAGTACAGCTTCAGTGATCATTTACCAATAATTTGTTTCATTTCAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATTCGAGGTATTTGGATTCTATATAGTATATATGTTTTATTGCCTCCTACTGATGTTGATGCTCAAGTTTTATTGTGCTGTTCCAATTTTAGCCCTTACTTATGCATTTACTCCACAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATCAATAAAGAAAGGTGACCTTTTTCTAGGATTGAAATATATATCATAAAGTGCAATTTTATCTTGAATATGCTCAAACTTGTTCACATGATTTGATGAATGCATGGGTATACTTAATTTGTTGGATATGGTCTGGTTATTATGAATCTTGAGATGATGTCCTAGCCAATTTGAATCTTGTTGAATGAGAAGCCTTCTATGTATCTGTATTGCATTGAATCCTATTAGTAGCCAGTGACTGTTTTAGATAATCTTATAGTGTAGAATTCTTCAATCTTGTCAGATATCGTTAAGCATATGTAGTGCAATCATTTGGAGAATTTATTACCTTTCATGATTCTGTTTTCTAAATTATTCTATTCCTGTTTAAGGCATTGTTATCTTGTAAAGTAAGTAGATAGTCTTATCTTTCTCTTATATTTATCTCAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTAAACTTGAGTTGTGCAACTTCAAAATATTTCTTATTAAACAAAGTCTATCTAGATGAGAAGGAAAGAATAACGGTACAACCCATGGCAGATCCAAAGCTTTAAGTCGGCAGCTATATAGAAATAAAGTTAATTACAAGTTTTGTCCTTAGATTTTGAGTGGTGTCTGTTTGGTTTTTGAACTTTCAGAAGTGTTTAATAGATCCTTGAACTTTCAAGTTTGTTTTTAATAGATTCTGGACAAATCTGACTATTATTTTTTTAATTAATTAATCTATTAACTATAAGTTTGAATTATAGTTTAGTAGAACCTTATATAAGTTCAATTTTATGTCTAATAAATCTATAAATTTTAAAAATTTTAAAAATTCAAGGATTAAATTGATAATTTATTGTAGAAATAATTCTGACCACATTGATATACTGATATATTGCTATCAGTTGGTAGATTTTGATAATAAATTGACTAAATTGTAAAATTTGTCCTAAACTTTCATGATTGTGATTAAAAGTCCCTAGCTTTAAAAGTTTATAACAAGTCACTAAACTTCCAACTTTCAATTGACAGGTTGCTAAATTTTCAAATTTGTATATAATGTGTCAAATTACAGAAGAGCAACAAAATACCGAATGCTTCTTGTTTCCCATATTATTATTATTATTATTATGTTGTAAACAGGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGTAATTTAAATTTTCTGGTTTAAAAGTCATCTCCTGACTGTTTTCTTTCTTCATTTTATATATGTACGCGCACACACACGAACATATTTTGATACTAAAGTTTTAGTTCTCCCGCATGCACATGCTTGTTATGATATTAAAATTGTATTCTCATATCTATTACAGGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGTTTATCATCCTGATAATCTCAAGTTTTATATCATACAGTTTTATTTATTTATTTATTTTTTTAATGAAAGTCATTTAAATTAAATCTTCAAGAAAGTTTACGTCTCATACATCATTTTTTGTTCTTTCTCCAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTAAGTGTTAGCTATATACTTTCATTTATTTCTTAAAAATAAAAGTTCTTCATCTCTTTGGTCGATCATGCTGTTTATTCCTCCTTTTCAGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTATATTGTTAGCTATCTACTGATATCTGATATTAGGATTGATGCATTTTAACTTCCATTCTATAATTCTAATAAACCTATTAAATTTCGAATTTTAAGACCAACAGTATTTTAATGGCATTATGACTGTTACATCTAACTCCCCTGCAAATTTTCCTTCATTTTGAATTTGTTGATTTACCATTTTTTTTTAAACTGAGATTCAATTATGTTGATCTTCAACATCAACATTGATTTAAGCTTCACAGTTCATTGGTATTGACTATATTTTTTGTCCGACCGTCCATGATCTGTCCAAAAGTACTTCTCTGCCTCTTTCTGTCTAATTTACTTCAGACTCTCCATTTCTCTCTATTATCTCAAATTACCTACAAAATCCATTAAACGAGAAGCATTAAAAATAATTCGAGTTCTTAAAGAACTGGTGGGATATAGAGACCTAATTGTCTCTACCTTTCTATACCGAATGACAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTATGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAATAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTGTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATAATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCA

mRNA sequence

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTATGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAATAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTGTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATAATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCA

Coding sequence (CDS)

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGA
Homology
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BLAST of CmoCh11G012570 vs. Swiss-Prot
Match: FEN1_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.4e-54
Identity = 112/189 (59.26%), Postives = 132/189 (69.84%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY V SEDMDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP+QEAR+LFKEPLV TD
Sbjct: 233 CDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 168
           E++LDIKW++PDEEGLI+FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKP  NP
Sbjct: 293 EKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANP 352

[Close]
BLAST of CmoCh11G012570 vs. Swiss-Prot
Match: FEN1_ARATH (Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 2.8e-53
Identity = 113/187 (60.43%), Postives = 128/187 (68.45%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +       
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+ EAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 166
           EEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352

[Close]
BLAST of CmoCh11G012570 vs. Swiss-Prot
Match: FEN11_ORYSI (Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.6e-48
Identity = 112/191 (58.64%), Postives = 126/191 (65.97%), Query Frame = 1 

Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK----LKYLSNSF-DKSVV 75
           D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK    L+   + F D  ++
Sbjct: 171 DMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCIL 230

Query: 76  TG----------------KL------------------YQIPEGWPFQEARQLFKEPLVC 135
           +G                KL                  YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 SGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDIPEL--KWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVV 350

[Close]
BLAST of CmoCh11G012570 vs. Swiss-Prot
Match: FEN11_ORYSJ (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.6e-48
Identity = 112/191 (58.64%), Postives = 126/191 (65.97%), Query Frame = 1 

Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK----LKYLSNSF-DKSVV 75
           D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK    L+   + F D  ++
Sbjct: 171 DMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCIL 230

Query: 76  TG----------------KL------------------YQIPEGWPFQEARQLFKEPLVC 135
           +G                KL                  YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 SGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDIPEL--KWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVV 350

[Close]
BLAST of CmoCh11G012570 vs. Swiss-Prot
Match: FEN11_SORBI (Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-47
Identity = 109/191 (57.07%), Postives = 126/191 (65.97%), Query Frame = 1 

Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV----- 75
           D V+AVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEF+VAK L+ L  + D+ +     
Sbjct: 171 DKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCIL 230

Query: 76  -----------VTGKL----------------------YQIPEGWPFQEARQLFKEPLVC 135
                      + G+                       YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 CGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KWT PDEEGLISFLV +NGFN DRVTKA+EKIK+AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDVPEL--KWTPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPVA 350

[Close]
BLAST of CmoCh11G012570 vs. TrEMBL
Match: A0A067JHI7_JATCU (Flap endonuclease 1 OS=Jatropha curcas GN=FEN1 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.4e-64
Identity = 139/244 (56.97%), Postives = 159/244 (65.16%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEFE+ K L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +    YQIP+ WP+QEAR+LFKEPLV TD
Sbjct: 233 CDYCDSIRGIGGLTALKLIRQHGCIETILENINRDRYQIPDDWPYQEARRLFKEPLVLTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
            E+ +IKWT PDEEGLI+FLVNENGFNSDRVTKA+EKIKAAKNKSSQGR+ESFFKPV N 
Sbjct: 293 GEEPEIKWTAPDEEGLIAFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANS 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 223
           SV  KRK TKCVL+SPK   + K      Y    KV GSLG PI+D   K   + PL   
Sbjct: 353 SVPVKRKETKCVLQSPKSATKSKMLSLQVYNFLPKVTGSLGLPIMDLGPKL--NMPLARG 412

[Close]
BLAST of CmoCh11G012570 vs. TrEMBL
Match: V4RRP9_9ROSI (Flap endonuclease 1 OS=Citrus clementina GN=FEN1 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-62
Identity = 141/244 (57.79%), Postives = 163/244 (66.80%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+QEAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQL IKW+ PDEEGLI+FLV+ENGFNSDRVTKA+EKIKAAKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHK-YSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVM 222
           S   KRK +KCVL+SPK  I+ + +S QA Y S  K+ G L    LD  SK+S   PL  
Sbjct: 353 SAPIKRKGSKCVLQSPKQEIKPRIFSLQACYSSGPKLNGGLCLLTLDLGSKHSS--PLGR 412

[Close]
BLAST of CmoCh11G012570 vs. TrEMBL
Match: A0A061F3A2_THECC (5'-3' exonuclease family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_026856 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 140/248 (56.45%), Postives = 167/248 (67.34%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDK----SVVTG 77
           VYAVASEDMDSLTFG+PRFLRHLMDPSSRK+PVMEFEVAK L+ L+ + D+     +++G
Sbjct: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEVAKVLEELNLTMDQFIDLCILSG 232

Query: 78  ----------------KL------------------YQIPEGWPFQEARQLFKEPLVCTD 137
                           KL                  Y IP+ WP+QEARQLF+EPLVCTD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIEHILQNINKERYSIPDDWPYQEARQLFQEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           +EQL++KW  PD+EGLI+FLVNENGFN DRVTKA+EKIKAAKNKSSQGR+ESFFKPV N 
Sbjct: 293 DEQLEMKWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKAAKNKSSQGRLESFFKPVGNT 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHK-YSPQAFYPSRTKVIGSLGT--PILDHSSKYSGSRPL 224
           S+  KRK TKC+L+ PKP ++ K  SPQ    SR K  GS+ T  P   HS+ +S     
Sbjct: 353 SIPIKRKGTKCMLQFPKPMLKSKILSPQVCKFSRPKGFGSMPTLGPDFKHSAAFS----- 412

[Close]
BLAST of CmoCh11G012570 vs. TrEMBL
Match: U5FR48_POPTR (Flap endonuclease 1 OS=Populus trichocarpa GN=FEN1 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.4e-61
Identity = 143/245 (58.37%), Postives = 163/245 (66.53%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDK----SVVTG 77
           VYAVASEDMDSLTFG+P FLRHLMDPSSRKIPVMEFE+ K L+ L+ S D+     +++G
Sbjct: 173 VYAVASEDMDSLTFGAPIFLRHLMDPSSRKIPVMEFEIPKILEGLNLSMDQFIDLCILSG 232

Query: 78  ----------------KL------------------YQIPEGWPFQEARQLFKEPLVCTD 137
                           KL                  YQIPE WP+QEARQLFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIESILENINKERYQIPEDWPYQEARQLFKEPAVLTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLD+KWT+PDEEGLI+FLVNENGFNSDRVTKA+EKIKAAKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDVKWTSPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRT--KVIGSLGTPILDHSSKYSGSRPLV 222
           S   KRK TKCVL+ PKP I+ K        S +  K IGSL    L+  SK+S + P  
Sbjct: 353 SQPVKRKGTKCVLRPPKPAIKLKMLSLQVCSSTSVPKTIGSLSMLTLNLFSKHSTTSP-- 412

[Close]
BLAST of CmoCh11G012570 vs. TrEMBL
Match: A0A067EYR9_CITSI (Flap endonuclease 1 OS=Citrus sinensis GN=FEN1 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.5e-61
Identity = 137/233 (58.80%), Postives = 159/233 (68.24%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+QEAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQL IKW+ PDEEGLI+FLV+ENGFNSDRVTKA+EKIKAAKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHK-YSPQAFYPSRTKVIGSLGTPILDHSSKYS 211
           S   KRK +KCVL+SPK  I+ + +S QA Y S  K+ G L    LD  SK+S
Sbjct: 353 SAPIKRKGSKCVLQSPKQEIKPRIFSLQACYSSGPKLNGGLCLLTLDLGSKHS 405

[Close]
BLAST of CmoCh11G012570 vs. TAIR10
Match: AT5G26680.1 (AT5G26680.1 5'-3' exonuclease family protein)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-54
Identity = 113/187 (60.43%), Postives = 128/187 (68.45%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +       
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+ EAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 166
           EEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352

[Close]
BLAST of CmoCh11G012570 vs. NCBI nr
Match: gi|778662219|ref|XP_011659557.1| (PREDICTED: flap endonuclease 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 172/245 (70.20%), Postives = 189/245 (77.14%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTD 293

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 294 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 353

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV KCVL+SPKPG QHK+S QAFY SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 354 SVSIKRKVNKCVLRSPKPGAQHKFSLQAFYFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 413

[Close]
BLAST of CmoCh11G012570 vs. NCBI nr
Match: gi|778662222|ref|XP_011659562.1| (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 172/245 (70.20%), Postives = 189/245 (77.14%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV KCVL+SPKPG QHK+S QAFY SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 353 SVSIKRKVNKCVLRSPKPGAQHKFSLQAFYFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 412

[Close]
BLAST of CmoCh11G012570 vs. NCBI nr
Match: gi|659099215|ref|XP_008450491.1| (PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 9.0e-84
Identity = 172/245 (70.20%), Postives = 188/245 (76.73%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 78  ------------------------VTGKL-------YQIPEGWPFQEARQLFKEPLVCTD 137
                                   + G L       YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTD 293

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 294 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 353

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV K VL+ PKPG QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 354 SVSIKRKVNKRVLRFPKPGAQHKFSLQAFSFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 413

[Close]
BLAST of CmoCh11G012570 vs. NCBI nr
Match: gi|659099217|ref|XP_008450492.1| (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 9.0e-84
Identity = 172/245 (70.20%), Postives = 188/245 (76.73%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 78  ------------------------VTGKL-------YQIPEGWPFQEARQLFKEPLVCTD 137
                                   + G L       YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV K VL+ PKPG QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 353 SVSIKRKVNKRVLRFPKPGAQHKFSLQAFSFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 412

[Close]
BLAST of CmoCh11G012570 vs. NCBI nr
Match: gi|658056393|ref|XP_008363949.1| (PREDICTED: flap endonuclease 1 isoform X1 [Malus domestica])

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 145/246 (58.94%), Postives = 169/246 (68.70%), Query Frame = 1 

Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDK----SVVTG 77
           VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEF++AK L+ L+ + D+     +++G
Sbjct: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFDIAKVLEELNLTMDQFIDLCILSG 232

Query: 78  ----------------KL------------------YQIPEGWPFQEARQLFKEPLVCTD 137
                           KL                  YQIPE WP+QEAR+LFKEP+  +D
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEEWPYQEARRLFKEPVALSD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQ++IKWT PDEEGLI+FLVNENGFNSDRV KA+EKIKAAKNKSSQGR+ESFFKP  NP
Sbjct: 293 EEQVEIKWTAPDEEGLIAFLVNENGFNSDRVAKAIEKIKAAKNKSSQGRLESFFKPTANP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHK-YSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVM 224
           SV  KRK +KCVLK PKP  +HK +  Q   PSR  VIGS+  PIL   SK+    PL  
Sbjct: 353 SVPIKRKGSKCVLKCPKPATRHKMFFLQDCNPSRPTVIGSISLPILHLGSKH--LMPLAK 412

The following BLAST results are available for this feature:
BLAST of CmoCh11G012570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FEN1_SOYBN4.4e-5459.26Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1[more]
FEN1_ARATH2.8e-5360.43Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2[more]
FEN11_ORYSI3.6e-4858.64Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3 SV=1[more]
FEN11_ORYSJ3.6e-4858.64Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1[more]
FEN11_SORBI1.4e-4757.07Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1[more]
BLAST of CmoCh11G012570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JHI7_JATCU9.4e-6456.97Flap endonuclease 1 OS=Jatropha curcas GN=FEN1 PE=3 SV=1[more]
V4RRP9_9ROSI6.8e-6257.79Flap endonuclease 1 OS=Citrus clementina GN=FEN1 PE=3 SV=1[more]
A0A061F3A2_THECC1.5e-6156.455'-3' exonuclease family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_... [more]
U5FR48_POPTR4.4e-6158.37Flap endonuclease 1 OS=Populus trichocarpa GN=FEN1 PE=3 SV=1[more]
A0A067EYR9_CITSI7.5e-6158.80Flap endonuclease 1 OS=Citrus sinensis GN=FEN1 PE=3 SV=1[more]
BLAST of CmoCh11G012570 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26680.11.6e-5460.43 5'-3' exonuclease family protein[more]
BLAST of CmoCh11G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778662219|ref|XP_011659557.1|1.9e-8670.20PREDICTED: flap endonuclease 1 isoform X1 [Cucumis sativus][more]
gi|778662222|ref|XP_011659562.1|1.9e-8670.20PREDICTED: flap endonuclease 1 isoform X2 [Cucumis sativus][more]
gi|659099215|ref|XP_008450491.1|9.0e-8470.20PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo][more]
gi|659099217|ref|XP_008450492.1|9.0e-8470.20PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo][more]
gi|658056393|ref|XP_008363949.1|1.1e-6558.94PREDICTED: flap endonuclease 1 isoform X1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR006086XPG-I_dom
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0044699 single-organism process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012570.1CmoCh11G012570.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 16..168
score: 3.2
IPR006086XPG-I domainPFAMPF00867XPG_Icoord: 16..55
score: 1.
IPR0200455'-3' exonuclease, C-terminal domainunknownSSF478075' to 3' exonuclease, C-terminal subdomaincoord: 73..153
score: 4.04
NoneNo IPR availablePANTHERPTHR11081:SF9FLAP ENDONUCLEASE 1coord: 16..168
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012570Cucumber (Gy14) v2cgybcmoB036
CmoCh11G012570Cucumber (Gy14) v2cgybcmoB049
CmoCh11G012570Melon (DHL92) v3.6.1cmomedB111
CmoCh11G012570Silver-seed gourdcarcmoB0632
CmoCh11G012570Cucumber (Chinese Long) v3cmocucB0097
CmoCh11G012570Cucumber (Chinese Long) v3cmocucB0109
CmoCh11G012570Cucurbita moschata (Rifu)cmocmoB048
CmoCh11G012570Cucumber (Gy14) v1cgycmoB0050
CmoCh11G012570Cucumber (Gy14) v1cgycmoB0051
CmoCh11G012570Cucurbita maxima (Rimu)cmacmoB079
CmoCh11G012570Cucurbita maxima (Rimu)cmacmoB119
CmoCh11G012570Wild cucumber (PI 183967)cmocpiB086
CmoCh11G012570Wild cucumber (PI 183967)cmocpiB099
CmoCh11G012570Cucumber (Chinese Long) v2cmocuB083
CmoCh11G012570Cucumber (Chinese Long) v2cmocuB096
CmoCh11G012570Melon (DHL92) v3.5.1cmomeB103
CmoCh11G012570Cucurbita pepo (Zucchini)cmocpeB130