CmoCh11G012400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	26S protease regulatory subunit 6A like A
Location	Cmo_Chr11 : 7746188 .. 7748240 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTCATTTATCCCTCTCTGAAGATCGGTTGATGAAATTTTCGCCTTCAGTTTTTGTGAGCTCAGGCGATTCCACTCGAAATGGCGATCCTCGAACAAGACCAGTTGGCTTCATTCACCACAGATCGCATCATTCGAGCTCCTCGTCTTCTAGAAAACGAGATTCGGATCTTCAAGGTCTCAGAATTTCTACTTTTTTGTTCATATTCTGCGCCACAATACATCTTAATTAGGTCGAAGTTCCTCTGATGATGTTGTATAAATAGTGTGCGAGTATGTGTTTGGTGCCCTTGATTTTTGTGGGCGAGAAGTTGGATTGACAGAATATTTGTTGTAATGAGCTAAATAATGTGATGAATTTCGACTTCCTAGTTTTGTATGCATCTTATGATATATAAAATGTTCGATGGATATTGCCGTTTTCTGTTGATGAATGGTGATGGTATCTGATTTTGTTCGAATTTTGGGGTTTGAAGGAAGAGGTGCAAAGGACGAATTTGGAGTGGGATTTTTTCAAGGAAAAAAGTAAACGAGGACCAGGAGAAGATTAAACTTAATAAGCAGCTACCTTATTTGGTCGGGAATATAGTTGAGTTAATTTCTCTCGTCACATGTAGATTACATCTGTTCATTCATTCGGTCAATATAGTTAGAAATTGTATTAGTAGTTTTGAAAGCTGTGATTGAGTGAGTTGTAATATTTAGGGAATTTTGCAACCATTTACGTGCCGATGTAAAAGAAGTAGCTATTTTCAGAAAGAAGCAAACATGAGAGTAACTAAGAACAATGAATCAATAAGAGAAAATAACTTTAAAAAACAGTGAACAAACACATGTTTTTATTCGTATTTGTTATAGAGAACATATTGCTGTTCTTAATACCAAATTTCAACCAAACACCCCCAATTTTTAATACGTCGTGTTTTTGTTATGACAAGATAAAGTTCATTATTTATGTCAGTAGATCACGGATTTTATGTTATGATTAAAATGGCTAGTAAGTATCTATAAAAAAAAATTTGGGGTATAACTTCTACCACTCTGGGTTTTATTTGATTTGAGTTGTTTATTTTATTTCAAGTTTTTATGTGCCTGAAATTTAACTCTACATATGATTTTGATGCTACCAGATTCTGGAAATGAACCCAGAAGATGAAGCTGAAGAGATGGTGCAAATATTGATCTTGACTCACAAAGAAATCGAAAATGTGTTGCGTTAAACGCACCTACTCGCCAGGTGAGTTACTATTCTGCTTTTATAGATAACCTTATAGCTATCAGAGAAATAGCAATGAAACTCTAGAGAATTCTATTGCTCTATTTCCCAATGTAGTGGTGCTTTACTTCTTTAGGGATCAGGTTATGTATGCCATTTTTTACATATTCAAACGCGGATGGATATTTTGCGGGCTCCTCTCTTCAGAGATCCAACTTTTTTCTATTTTAGGATGCAGTGTTGTGATGGTCTGGTTACCTGGTTTTTATGATTTTCATAATGTTGTTATGGTATAGCACTATCACTCAGTATCAGACTAAGATTAGTTGGTTACAGTTTAAAATCTAACTTCTTTATTGTGAAAATGTCATACTTGATTCAATTTATGGCTCATGCTTTTTTTAAACTAGACAAGAGTTCTGATTCGTTCTATTCATTTAATCTCTGGACCATGTGAAATCCCAGCGTGTTTTGTTTTTGACTGCAGACAATCTTTTTACCTGTTGTTGGGATTGTTGATTCCAACAAATTAAAACCTGGTGATTTAGTTGAGAGTTACCTGATCTTGGACACTCTACCATCTGGGTACGATTCTAGAGTCGAGGCAATGGACGTTGATGAAAAGCATTAGAGGGTTGGAGAAGCAGGCAAGTCTCTAGCTTTCTCTAGGCATGCCTTATATGAACAATGAACATGCATTTGTTTTCGTCACATAATTGAGCATGTATCTACCCATTTATCATACAATTCCACACATTCTTTTTACGCATAACTTTCATTTTAGACCATAAAATTCAATTTTAGTGATTAGAAGGTTGAATGTATAACTTCAAGCGTG

mRNA sequence

AACTCATTTATCCCTCTCTGAAGATCGGTTGATGAAATTTTCGCCTTCAGTTTTTGTGAGCTCAGGCGATTCCACTCGAAATGGCGATCCTCGAACAAGACCAGTTGGCTTCATTCACCACAGATCGCATCATTCGAGCTCCTCGTCTTCTAGAAAACGAGATTCGGATCTTCAAGATTCTGGAAATGAACCCAGAAGATGAAGCTGAAGAGATGGTGCAAATATTGATCTTGACTCACAAAGAAATCGAAAATACAATCTTTTTACCTGTTGTTGGGATTGTTGATTCCAACAAATTAAAACCTGGTGATTTAGTTGAGAGTTACCTGATCTTGGACACTCTACCATCTGGGTACGATTCTAGAGTCGAGGCAATGGACGTTGATGAAAAGCATTAGAGGGTTGGAGAAGCAGGCAAGTCTCTAGCTTTCTCTAGGCATGCCTTATATGAACAATGAACATGCATTTGTTTTCGTCACATAATTGAGCATGTATCTACCCATTTATCATACAATTCCACACATTCTTTTTACGCATAACTTTCATTTTAGACCATAAAATTCAATTTTAGTGATTAGAAGGTTGAATGTATAACTTCAAGCGTG

Coding sequence (CDS)

ATGGCGATCCTCGAACAAGACCAGTTGGCTTCATTCACCACAGATCGCATCATTCGAGCTCCTCGTCTTCTAGAAAACGAGATTCGGATCTTCAAGATTCTGGAAATGAACCCAGAAGATGAAGCTGAAGAGATGGTGCAAATATTGATCTTGACTCACAAAGAAATCGAAAATACAATCTTTTTACCTGTTGTTGGGATTGTTGATTCCAACAAATTAAAACCTGGTGATTTAGTTGAGAGTTACCTGATCTTGGACACTCTACCATCTGGGTACGATTCTAGAGTCGAGGCAATGGACGTTGATGAAAAGCATTAG

Homology

[Close]

BLAST of CmoCh11G012400 vs. Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 68/153 (44.44%), Postives = 82/153 (53.59%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E+DQLAS +T+ I+RA RLLENEIRI                                  
Sbjct: 13  EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPY 72

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEMNPED+AEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 73  LVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKP 132

[Close]

BLAST of CmoCh11G012400 vs. Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.6e-20
Identity = 67/153 (43.79%), Postives = 81/153 (52.94%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E+DQLAS +T+ I RA RLL+NEIRI                                  
Sbjct: 13  EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPY 72

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEMNPED+AEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 73  LVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKP 132

[Close]

BLAST of CmoCh11G012400 vs. Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 65/153 (42.48%), Postives = 80/153 (52.29%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           + DQLAS +T+ I+RA RLL+NE R+                                  
Sbjct: 18  DDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPY 77

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEMNPEDEAEE    +          ++       TIFLPV+G+VD  KLKP
Sbjct: 78  LVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKP 137

[Close]

BLAST of CmoCh11G012400 vs. Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-19
Identity = 66/153 (43.14%), Postives = 80/153 (52.29%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E DQL + +T+ IIRA RLL+NEIRI                                  
Sbjct: 12  EDDQLHAMSTEDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPY 71

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEMNPE+EAEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 72  LVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKP 131

[Close]

BLAST of CmoCh11G012400 vs. Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-19
Identity = 68/153 (44.44%), Postives = 79/153 (51.63%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E DQLAS TTD I RA RLL NEIRI                                  
Sbjct: 12  EGDQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPY 71

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEM+PED+AEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 72  LVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKP 131

[Close]

BLAST of CmoCh11G012400 vs. TrEMBL
Match: A0A0D2U0A9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G125900 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIFKILEMNPEDEAEEMVQILILTHKEIENTIFLPV 64
           E+DQLAS TT+ I+RA RLL+NEIRI K    N + +++   + ++L       TIFLPV
Sbjct: 12  EEDQLASMTTEDIVRASRLLDNEIRILKEDGANIDLDSQRKGKCVVLK-TSTRQTIFLPV 71

Query: 65  VGIVDSNKLKPGDLV----ESYLILDTLPSGYDSRVEAMDVDEK 105
           VG+VD +KLKPGDLV    +SYLILDTLPS YDSRV+AM+VDEK
Sbjct: 72  VGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 114

[Close]

BLAST of CmoCh11G012400 vs. TrEMBL
Match: V7BIW3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G197100g PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 72/156 (46.15%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD I+RA RLL+NEIRI K                             
Sbjct: 9   ATFEDDQLANMTTDDIVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

[Close]

BLAST of CmoCh11G012400 vs. TrEMBL
Match: A0A0A0LWD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569300 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-20
Identity = 72/154 (46.75%), Postives = 84/154 (54.55%), Query Frame = 1


Query: 4   LEQDQLASFTTDRIIRAPRLLENEIRIF-------------------------------- 63
           LE+DQLAS TT+ IIRA RLL+NEIRI                                 
Sbjct: 11  LEEDQLASMTTEDIIRASRLLDNEIRILKEEMQRTNLEWDSFKEKIKENQEKIKLNKQLP 70

Query: 64  -------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLK 105
                  +ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +KLK
Sbjct: 71  YLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLK 130

[Close]

BLAST of CmoCh11G012400 vs. TrEMBL
Match: A0A0L9TYE5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g166600 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-20
Identity = 71/156 (45.51%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD ++RA RLL+NEIRI K                             
Sbjct: 9   ATFEDDQLANMTTDDVVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

[Close]

BLAST of CmoCh11G012400 vs. TrEMBL
Match: A0A0S3SQD5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G173900 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-20
Identity = 71/156 (45.51%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD ++RA RLL+NEIRI K                             
Sbjct: 9   ATFEDDQLANMTTDDVVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

[Close]

BLAST of CmoCh11G012400 vs. TAIR10
Match: AT3G05530.1 (AT3G05530.1 regulatory particle triple-A ATPase 5A)

HSP 1 Score: 97.4 bits (241), Expect = 5.4e-21
Identity = 67/153 (43.79%), Postives = 81/153 (52.94%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E+DQLAS +T+ I RA RLL+NEIRI                                  
Sbjct: 13  EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPY 72

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEMNPED+AEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 73  LVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKP 132

[Close]

BLAST of CmoCh11G012400 vs. TAIR10
Match: AT1G09100.1 (AT1G09100.1 26S proteasome AAA-ATPase subunit RPT5B)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-20
Identity = 68/153 (44.44%), Postives = 79/153 (51.63%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIF--------------------------------- 64
           E DQLAS TTD I RA RLL NEIRI                                  
Sbjct: 12  EGDQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPY 71

Query: 65  ------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLKP 105
                 +ILEM+PED+AEE    +          ++       TIFLPVVG+VD + LKP
Sbjct: 72  LVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKP 131

[Close]

BLAST of CmoCh11G012400 vs. NCBI nr
Match: gi|763814176|gb|KJB81028.1| (hypothetical protein B456_013G125900 [Gossypium raimondii])

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-20
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 5   EQDQLASFTTDRIIRAPRLLENEIRIFKILEMNPEDEAEEMVQILILTHKEIENTIFLPV 64
           E+DQLAS TT+ I+RA RLL+NEIRI K    N + +++   + ++L       TIFLPV
Sbjct: 12  EEDQLASMTTEDIVRASRLLDNEIRILKEDGANIDLDSQRKGKCVVLK-TSTRQTIFLPV 71

Query: 65  VGIVDSNKLKPGDLV----ESYLILDTLPSGYDSRVEAMDVDEK 105
           VG+VD +KLKPGDLV    +SYLILDTLPS YDSRV+AM+VDEK
Sbjct: 72  VGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 114

[Close]

BLAST of CmoCh11G012400 vs. NCBI nr
Match: gi|593688629|ref|XP_007144949.1| (hypothetical protein PHAVU_007G197100g [Phaseolus vulgaris])

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-20
Identity = 72/156 (46.15%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD I+RA RLL+NEIRI K                             
Sbjct: 9   ATFEDDQLANMTTDDIVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

[Close]

BLAST of CmoCh11G012400 vs. NCBI nr
Match: gi|951029336|ref|XP_014514656.1| (PREDICTED: 26S protease regulatory subunit 6A homolog [Vigna radiata var. radiata])

HSP 1 Score: 105.1 bits (261), Expect = 7.4e-20
Identity = 71/156 (45.51%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD ++RA RLL+NEIRI K                             
Sbjct: 9   ATFEDDQLANMTTDDVVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

[Close]

BLAST of CmoCh11G012400 vs. NCBI nr
Match: gi|449435627|ref|XP_004135596.1| (PREDICTED: 26S protease regulatory subunit 6A homolog [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 7.4e-20
Identity = 72/154 (46.75%), Postives = 84/154 (54.55%), Query Frame = 1


Query: 4   LEQDQLASFTTDRIIRAPRLLENEIRIF-------------------------------- 63
           LE+DQLAS TT+ IIRA RLL+NEIRI                                 
Sbjct: 11  LEEDQLASMTTEDIIRASRLLDNEIRILKEEMQRTNLEWDSFKEKIKENQEKIKLNKQLP 70

Query: 64  -------KILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNKLK 105
                  +ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +KLK
Sbjct: 71  YLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLK 130

[Close]

BLAST of CmoCh11G012400 vs. NCBI nr
Match: gi|947043176|gb|KRG92900.1| (hypothetical protein GLYMA_20G236500 [Glycine max])

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-20
Identity = 72/156 (46.15%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 2   AILEQDQLASFTTDRIIRAPRLLENEIRIFK----------------------------- 61
           A  E DQLA+ TTD I+RA RLL+NEIRI K                             
Sbjct: 9   ANFEDDQLANMTTDDIVRASRLLDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQ 68

Query: 62  ----------ILEMNPEDEAEEMVQIL----------ILTHKEIENTIFLPVVGIVDSNK 105
                     ILEMNPEDEAEE    +          ++       TIFLPVVG+VD +K
Sbjct: 69  LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128

The following BLAST results are available for this feature:

BLAST of CmoCh11G012400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRS6A_BRACM	1.5e-20	44.44	26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 S...	[more]
PS6AA_ARATH	9.6e-20	43.79	26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE...	[more]
PRS6A_ORYSJ	1.3e-19	42.48	26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TB...	[more]
PRS6A_SOLLC	6.2e-19	43.14	26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 ...	[more]
PS6AB_ARATH	8.1e-19	44.44	26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE...	[more]

BLAST of CmoCh11G012400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2U0A9_GOSRA	3.0e-20	58.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G125900 PE=3 SV=1	[more]
V7BIW3_PHAVU	3.9e-20	46.15	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G197100g PE=3 SV=1	[more]
A0A0A0LWD4_CUCSA	5.1e-20	46.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569300 PE=3 SV=1	[more]
A0A0L9TYE5_PHAAN	5.1e-20	45.51	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g166600 PE=3 SV=1	[more]
A0A0S3SQD5_PHAAN	5.1e-20	45.51	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G173900 PE=...	[more]

BLAST of CmoCh11G012400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05530.1	5.4e-21	43.79	regulatory particle triple-A ATPase 5A	[more]
AT1G09100.1	4.6e-20	44.44	26S proteasome AAA-ATPase subunit RPT5B	[more]

BLAST of CmoCh11G012400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763814176\|gb\|KJB81028.1\|	4.3e-20	58.65	hypothetical protein B456_013G125900 [Gossypium raimondii]	[more]
gi\|593688629\|ref\|XP_007144949.1\|	5.6e-20	46.15	hypothetical protein PHAVU_007G197100g [Phaseolus vulgaris]	[more]
gi\|951029336\|ref\|XP_014514656.1\|	7.4e-20	45.51	PREDICTED: 26S protease regulatory subunit 6A homolog [Vigna radiata var. radiat...	[more]
gi\|449435627\|ref\|XP_004135596.1\|	7.4e-20	46.75	PREDICTED: 26S protease regulatory subunit 6A homolog [Cucumis sativus]	[more]
gi\|947043176\|gb\|KRG92900.1\|	9.6e-20	46.15	hypothetical protein GLYMA_20G236500 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019538	protein metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0030433	ER-associated ubiquitin-dependent protein catabolic process
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0045899	positive regulation of RNA polymerase II transcriptional preinitiation complex assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031597	cytosolic proteasome complex
cellular_component	GO:0031595	nuclear proteasome complex
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0036402	proteasome-activating ATPase activity
molecular_function	GO:0017025	TBP-class protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012400.1	CmoCh11G012400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23073	26S PROTEASE REGULATORY SUBUNIT	coord: 6..104 score: 3.0
None	No IPR available	PANTHER	PTHR23073:SF7	26S PROTEASE REGULATORY SUBUNIT 6A	coord: 6..104 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G012400	CmaCh11G011990	Cucurbita maxima (Rimu)	cmacmoB119
CmoCh11G012400	Lsi06G000970	Bottle gourd (USVL1VR-Ls)	cmolsiB134
CmoCh11G012400	MELO3C015296.2	Melon (DHL92) v3.6.1	cmomedB121
CmoCh11G012400	CsaV3_1G038720	Cucumber (Chinese Long) v3	cmocucB0107
CmoCh11G012400	Cla97C03G067640	Watermelon (97103) v2	cmowmbB103
CmoCh11G012400	Bhi02G001719	Wax gourd	cmowgoB0164
CmoCh11G012400	CsGy1G025620	Cucumber (Gy14) v2	cgybcmoB043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012400	Wild cucumber (PI 183967)	cmocpiB096
CmoCh11G012400	Cucumber (Chinese Long) v2	cmocuB094
CmoCh11G012400	Melon (DHL92) v3.5.1	cmomeB112
CmoCh11G012400	Watermelon (Charleston Gray)	cmowcgB103
CmoCh11G012400	Watermelon (97103) v1	cmowmB091
CmoCh11G012400	Cucurbita pepo (Zucchini)	cmocpeB130
CmoCh11G012400	Silver-seed gourd	carcmoB0632
CmoCh11G012400	Cucumber (Gy14) v1	cgycmoB0520