CmoCh11G012330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr11 : 7554419 .. 7555234 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTGTCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAATTTAAAACTTCCCATGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTCTTATGCATTTCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACTGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAATAG

mRNA sequence

ATGAGGGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTGTCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAATTTAAAACTTCCCATGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTCTTATGCATTTCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACTGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAATAG

Coding sequence (CDS)

ATGAGGGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTGTCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAATTTAAAACTTCCCATGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTCTTATGCATTTCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACTGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAATAG
Homology
[Close]
BLAST of CmoCh11G012330 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 9.4e-50
Identity = 99/195 (50.77%), Postives = 138/195 (70.77%), Query Frame = 1 

Query: 46  NVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDK 105
           N+  I +K+P F GK+DPE YL+WE  +E +FNCHN+S+ +KV +   +FK+YA +WWD+
Sbjct: 68  NLRGIKIKVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQ 127

Query: 106 LMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTL 165
           L   RRR  E PID+W E K  MR+RFVP Y+ R++  KLQ L QG KSVE+Y+KEM+ L
Sbjct: 128 LTKDRRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVL 187

Query: 166 MDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSS 225
             R  ++ED EA MARFL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++R+SQ   +
Sbjct: 188 KIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRN 247

Query: 226 KTFPNSTSTWKKDSK 241
            T  NS S WK  +K
Sbjct: 248 STTFNSQS-WKDKTK 261

[Close]
BLAST of CmoCh11G012330 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 98/195 (50.26%), Postives = 139/195 (71.28%), Query Frame = 1 

Query: 46  NVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDK 105
           N+  I +K+P F GK+DPE YL+WE  +E +FNCHN+S+ +KV +   +FK+YA +WWD+
Sbjct: 68  NLRGIKIKVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQ 127

Query: 106 LMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTL 165
           L+  RRR  E PID+W E K  MR+RFVP Y+ R++  KL+ L QG KSVE+Y+KEM+ L
Sbjct: 128 LIKDRRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVL 187

Query: 166 MDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSS 225
             R  ++ED EA MARFL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++R+SQ   +
Sbjct: 188 KIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRN 247

Query: 226 KTFPNSTSTWKKDSK 241
            T  NS S WK  +K
Sbjct: 248 STTFNSQS-WKDKTK 261

[Close]
BLAST of CmoCh11G012330 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.3e-48
Identity = 97/207 (46.86%), Postives = 141/207 (68.12%), Query Frame = 1 

Query: 35  QRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQ 94
           +R  ++ R D ++G+I + +P F GK DPE YL+WE+ VE VF+CHN+S+EKKV L + +
Sbjct: 16  ERRSFELRSDNHLGNIKMTIPTFQGKNDPELYLEWERKVEHVFDCHNYSEEKKVKLAVVE 75

Query: 95  FKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKS 154
           F  Y  IWWD+ + ++RRN E  I +W E K  +R+RFVP ++ RD+ +KLQ+L QG  S
Sbjct: 76  FTDYVSIWWDQFVINKRRNGERFICTWEEMKVVIRRRFVPSHYHRDLHRKLQSLTQGSMS 135

Query: 155 VEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIER 214
           VEDYYKEM+  M R+ ++ED E  MARF+ GL  E+ D  +LQ Y  +E+LLH AI++ER
Sbjct: 136 VEDYYKEMELAMIRVNVEEDYEVTMARFIGGLKKEMVDVVELQHYVEVEDLLHKAIQVER 195

Query: 215 QIQRRSQLYSSKTFPNSTSTWKKDSKN 242
           Q++ +     SK   +S S W+ + KN
Sbjct: 196 QMKSKG---PSKVNSSSNSLWRSNWKN 219

[Close]
BLAST of CmoCh11G012330 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.2e-48
Identity = 104/243 (42.80%), Postives = 161/243 (66.26%), Query Frame = 1 

Query: 22  RGRDHGRRCHNLQQRV-PYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCH 81
           R  +H RR H+ ++RV P DD     +  + +++P F G  DP+EYL+WEK +E VFNC 
Sbjct: 413 RQTNHRRRRHDREERVLPRDD-----LAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQ 472

Query: 82  NFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRD 141
            +++E KV +  ++F+ YA  WWD+L+++RRR  + PI+SW + K  MRKRFVP ++ R+
Sbjct: 473 QYTEESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRE 532

Query: 142 MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYS 201
           +  +L+ L QG KSVE+YYKEM+TLM R ++ ED EA+M+RF+ GLN +I D+ ++Q Y 
Sbjct: 533 LHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYV 592

Query: 202 NIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFE 261
            +EELLH AI  E+Q++RRS   S  +F +   ++ KD ++   K     I  K + + +
Sbjct: 593 ELEELLHKAIMFEKQLKRRS---SKPSFGSGKPSYHKDERSGFQKDYKPFIKPKVEDQDQ 647

Query: 262 KGE 264
           KG+
Sbjct: 653 KGK 647

[Close]
BLAST of CmoCh11G012330 vs. TrEMBL
Match: A5YPB7_9ROSI (Putative gag protein (Fragment) OS=(Populus tomentosa x Populus bolleana) x Populus tomentosa PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.4e-47
Identity = 90/173 (52.02%), Postives = 129/173 (74.57%), Query Frame = 1 

Query: 43  IDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIW 102
           +D ++ +I LK+P F GK DPE YL+WEK V+ +F+CH++S++KKV L I +F +YA IW
Sbjct: 1   MDGDLDTIKLKIPTFQGKNDPEAYLEWEKKVDWIFDCHSYSEQKKVKLVIIEFTEYALIW 60

Query: 103 WDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEM 162
           WD+++ SRRRN E P+ +W E K  MR+RFVP ++ RD+  KLQ L QG K+V++Y+KEM
Sbjct: 61  WDQIVISRRRNGERPVQTWGEMKVLMRRRFVPNHYYRDLYLKLQGLNQGYKTVDEYHKEM 120

Query: 163 DTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQ 216
           +  M R  + ED EA MARFLNGLN +IA+  +LQ Y  +E+++H+A K+ERQ
Sbjct: 121 EIAMIRANVVEDREATMARFLNGLNRDIANVVELQHYVELEDMVHMATKVERQ 173

[Close]
BLAST of CmoCh11G012330 vs. TAIR10
Match: AT1G40129.1 (AT1G40129.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-07
Identity = 37/150 (24.67%), Postives = 67/150 (44.67%), Query Frame = 1 

Query: 60  KTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPID 119
           ++  E+YL+WEK ++  F+  NF  E + +  +S     A  WW + +  R    E PI 
Sbjct: 85  QSRKEDYLEWEKNMDEWFSYKNFLSEMRFVCALSHLTGNAYKWWLQEVEDRLYYKEPPIT 144

Query: 120 SWVEFKESMRKRFVPQYFQRDMAQKLQA---LKQGRKSVEDYYKEMDTLMDRLELDEDME 179
            W + KE +R ++  Q   R     + A     Q ++ V   Y + + + ++   DE   
Sbjct: 145 LWRDLKEFLRNKYALQVSNRSRKVSITAQGLAAQEKEQVLAPYSKKNPIAEQQLKDE--- 204

Query: 180 ALMARFLNGLNTEIADKTDLQPYSNIEELL 207
             + + LN  N     K+  QP    +E++
Sbjct: 205 --ILKILNAYNKPKKAKSTSQPKMVTKEVV 229

[Close]
BLAST of CmoCh11G012330 vs. TAIR10
Match: AT2G15180.1 (AT2G15180.1 Zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 24/70 (34.29%), Postives = 36/70 (51.43%), Query Frame = 1 

Query: 66  YLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFK 125
           YLQWE  +   F  H+ + E K+ + + Q K  A  WWD+   +R     API +W   K
Sbjct: 119 YLQWESNMNYYFEFHSTAQEDKLSIALGQLKGSALWWWDQDEYNRWYERRAPIRTWERLK 178

Query: 126 ESMRKRFVPQ 136
            +M  ++ PQ
Sbjct: 179 WNMCAKYSPQ 188

[Close]
BLAST of CmoCh11G012330 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 219.5 bits (558), Expect = 6.9e-54
Identity = 122/266 (45.86%), Postives = 173/266 (65.04%), Query Frame = 1 

Query: 3   GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTD 62
           GD+ D  +D         MRGRD+ R             R+DR++GSI LK+P F GK D
Sbjct: 70  GDDVDDFDDQATVD----MRGRDNRRA-----------SRMDRDLGSIKLKIPSFQGKND 129

Query: 63  PEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 122
           PE YL+WEK VE VF+CHN+S+EKKV L   +F  YA IWWD+L+ SRRRN E PI++W 
Sbjct: 130 PEAYLEWEKKVELVFDCHNYSEEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTWE 189

Query: 123 EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 182
           E K  MR+RFVP ++ R++ Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ EA MARF
Sbjct: 190 EMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMARF 249

Query: 183 LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWK----KD 242
           L+GLN +IA+  DLQ Y  +E+++H+A+K+ERQ++++    S++T   S+S+WK    KD
Sbjct: 250 LHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWKSKWSKD 309

Query: 243 SKNIDYKHRNQEINEKPQAKFEKGES 265
            K +         + K      KG+S
Sbjct: 310 EKVVSKPKIEPIKDHKEGGNQSKGKS 317

[Close]
BLAST of CmoCh11G012330 vs. NCBI nr
Match: gi|823166069|ref|XP_012482973.1| (PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 9.0e-54
Identity = 114/247 (46.15%), Postives = 166/247 (67.21%), Query Frame = 1 

Query: 24  RDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFS 83
           R  G+R    + R    +RID ++ +  + +P F G++DPE YL+WEK VE VF CHN+S
Sbjct: 109 RRQGQRARGPRDR----ERIDDDLKNTKMAIPAFQGRSDPEAYLEWEKKVELVFECHNYS 168

Query: 84  DEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQ 143
           + KKV L   +F  YA IWWD+L  SRRRN E P+ +WVE K  MRKRF+P Y+ R++ Q
Sbjct: 169 ESKKVKLAAIEFSDYAIIWWDQLTMSRRRNGERPVSTWVEMKAIMRKRFIPAYYHRELYQ 228

Query: 144 KLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIE 203
           KLQ+L QG++SVEDYYKEM+  M R +++ED EA MARFL GLN +IA+  +L  Y  + 
Sbjct: 229 KLQSLTQGQRSVEDYYKEMEVAMIRADVEEDREATMARFLAGLNRDIANIVELHHYVEVI 288

Query: 204 ELLHIAIKIERQIQRRSQLYSSKTFPNSTST--WKKDSKNIDYKHRNQEIN-----EKPQ 263
           +++H+AIK+E+Q++R+    + ++FPN++ST  W + S   D   RN+E++      KP 
Sbjct: 289 DMVHMAIKVEKQLKRKG---TFRSFPNTSSTTKWGQGSNKRDLPSRNKEVSGATKFNKPM 348

[Close]
BLAST of CmoCh11G012330 vs. NCBI nr
Match: gi|985466622|ref|XP_015389621.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sinensis])

HSP 1 Score: 217.2 bits (552), Expect = 3.4e-53
Identity = 118/248 (47.58%), Postives = 165/248 (66.53%), Query Frame = 1 

Query: 21  MRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCH 80
           MRGRD+ R             RIDR++GSI LK+P F GK DPE YL+WEK VE VF+CH
Sbjct: 84  MRGRDNRRA-----------RRIDRDLGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCH 143

Query: 81  NFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRD 140
           N+  EKKV L   +F  YA IWWD+L+ SRRRN E PI++W E K  MR+RFVP ++ R+
Sbjct: 144 NYFKEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRE 203

Query: 141 MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYS 200
           + Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ EA MARFL+GLN +IA+  DLQ Y 
Sbjct: 204 LHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMARFLHGLNQDIANVIDLQYYV 263

Query: 201 NIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWK----KDSKNIDYKHRNQEINEKPQ 260
            +E+++H+A+K+ERQ++++    S++T   S+S+WK    KD K +         + K  
Sbjct: 264 ELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWKSKWSKDEKVVSKPKIEPIKDHKEG 317

Query: 261 AKFEKGES 265
               KG+S
Sbjct: 324 GNQSKGKS 317

[Close]
BLAST of CmoCh11G012330 vs. NCBI nr
Match: gi|848899820|ref|XP_012850053.1| (PREDICTED: uncharacterized protein LOC105969822 [Erythranthe guttata])

HSP 1 Score: 213.8 bits (543), Expect = 3.8e-52
Identity = 101/205 (49.27%), Postives = 149/205 (72.68%), Query Frame = 1 

Query: 41  DRIDRNVGSINLKLPMFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQ 100
           +R D N+G+I + +P F+G+ DPE Y++WE+ +E +F+CHN+S+ KKV L   +F  YA 
Sbjct: 104 NREDNNLGNIKVNIPSFHGRNDPEAYIEWERKMELLFDCHNYSEHKKVKLAAIEFSDYAI 163

Query: 101 IWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYK 160
           IWWD+L+ +RRRN E P+ +W E K  MRKRFVP Y+ R++ QKLQ LKQG +SVE+Y+K
Sbjct: 164 IWWDQLVLNRRRNRENPVATWDEMKSLMRKRFVPSYYFRELYQKLQNLKQGNRSVEEYFK 223

Query: 161 EMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRS 220
           EM+  M R+ ++ED EA MARFL GLN EIA+  +LQ Y  +E+++H+AIKIE Q++RR 
Sbjct: 224 EMEISMIRVNIEEDREATMARFLAGLNREIANVVELQHYVEMEDMVHMAIKIENQLKRRG 283

Query: 221 QLYSSKTFPNSTSTWKKDSKNIDYK 246
              + +  P+S+S+W+ +  + D K
Sbjct: 284 N--NPRPAPSSSSSWRHNGVSKDEK 306

[Close]
BLAST of CmoCh11G012330 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 213.0 bits (541), Expect = 6.5e-52
Identity = 122/266 (45.86%), Postives = 172/266 (64.66%), Query Frame = 1 

Query: 3   GDNSDHHEDNPHAVGHGLMRGRDHGRRCHNLQQRVPYDDRIDRNVGSINLKLPMFYGKTD 62
           GD+ D  +D         MRGRD+ R             RIDR++GSI LK+P F GK D
Sbjct: 70  GDDVDDFDDQATVD----MRGRDNRRA-----------RRIDRDLGSIKLKIPSFQGKHD 129

Query: 63  PEEYLQWEKTVESVFNCHNFSDEKKVLLCISQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 122
           PE YL+WEK VE VF+CHN+S+EKKV L   +F  YA IWWD+L+ SRRRN E PI++W 
Sbjct: 130 PEAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYAIIWWDQLVLSRRRNRERPINTWE 189

Query: 123 EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 182
           E K  MR+RFVP ++ R++ Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ E  MARF
Sbjct: 190 EMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEERET-MARF 249

Query: 183 LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQLYSSKTFPNSTSTWK----KD 242
           L+GLN +IA+  DLQ Y  +E+++H+A+K+ERQ++++    S++T   S+S+WK    KD
Sbjct: 250 LHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWKSKWSKD 309

Query: 243 SKNIDYKHRNQEINEKPQAKFEKGES 265
            K +         + K      KG+S
Sbjct: 310 EKVVSKPKIEPIKDHKEGGNQSKGKS 316

The following BLAST results are available for this feature:
BLAST of CmoCh11G012330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012330 vs. TrEMBL
Match NameE-valueIdentityDescription
E7BQD6_PEA9.4e-5050.77Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
E7BQD7_PEA1.6e-4950.26Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A0A151U9W8_CAJCA2.3e-4846.86Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1[more]
Q9LQH2_ARATH5.2e-4842.80F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1[more]
A5YPB7_9ROSI4.4e-4752.02Putative gag protein (Fragment) OS=(Populus tomentosa x Populus bolleana) x Popu... [more]
BLAST of CmoCh11G012330 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G40129.16.7e-0724.67 unknown protein[more]
AT2G15180.11.5e-0634.29 Zinc knuckle (CCHC-type) family protein[more]
BLAST of CmoCh11G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|568833665|ref|XP_006470999.1|6.9e-5445.86PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis][more]
gi|823166069|ref|XP_012482973.1|9.0e-5446.15PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii][more]
gi|985466622|ref|XP_015389621.1|3.4e-5347.58PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sin... [more]
gi|848899820|ref|XP_012850053.1|3.8e-5249.27PREDICTED: uncharacterized protein LOC105969822 [Erythranthe guttata][more]
gi|985456365|ref|XP_015387373.1|6.5e-5245.86PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012330.1CmoCh11G012330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 93..188
score: 3.0
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 42..217
score: 2.2
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 42..217
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012330Cucurbita pepo (Zucchini)cmocpeB127
CmoCh11G012330Wax gourdcmowgoB0164
CmoCh11G012330Cucurbita maxima (Rimu)cmacmoB679