CmoCh11G012310 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCytochrome b6/f complex subunit IV
LocationCmo_Chr11 : 7506139 .. 7508944 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGCAAGATGGTCTTAATGTAATGATACTCCTGCACGTATTTCGCGTGTATCTTACTTACTGGATGGGGGATTTCAAAAACCTTGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCGGTTATTGGGCAGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTCTTCAAGTACATAGGGTCTTGCTAGAGTTATTACGTGGAAGTGCTAGTGGGGGACAATCTACCTTGACTCGTTTTTCTAGTTTACACATTTTGACCTCTTCTTACTGCCTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTCTAGAGAATAGAAAGAATAGATTTCTAATTAGTTAGTTATGATTACTCGGGGGAGGAAGAAGAGTATTTCATTGCTGCAAATATGTCTGATTGAAAAATAATAGTTTCAGGGAATTCTTCGAAGAGAAAATAGATTATGGGAGGGAGTGTGCGACTTGAACTATTGATTGGGCCATGTGGATATATATATGTCTCTTTATCTGCTGGGATTCACAACCAAATGTGTCTTTATTCCAACCACCGGGAAAGCTCCATACAGAGGGTAGGTTGGTTCGCTTGAAGAGAATCTTTTCTATCTATGATCAGACTTGACCATGTCGTGCATGACCAGGCTCCGTAAGATCCAGTAGAATAGGTGATACATCTTGCTTCAGATTATGTTTTATCTATTTAACTTCCTCTACATTGACTCGATTTATGATACTATAGGAGTGAAAGAAGAGATCTAAAGAAGAACATAGGCTAGACTCTATTAGTAAGTAAGAAGTAAATCCTTTGCTTTGGATGTCAAAAGTCAGTATCCTTTAATGCTATTTGTGGGCTAAAGCTCGGAAGGTCTGAGACGACCCATAAAGCACTTGAACATCATCAACTTTGTAAGCCTACTTGGGTATTGAGCATTTATCTGTAAGAACTGAATGAGGTGTAATGGAGAATTCATTCTCTGGAAAACGGAATCTGCTCTATTTGTTCTTACATGGAATCAATCATTGATTTTATATCTGCATCCAGTTGGTTCGTTTGATTTGTGCTCGAGCCGGATGATGCAAAATTCTTATGTCCGGTTCTCTTTCGGGGGATGGATCCATTATAATTCACCTAATAAGACCAGATTTGAATGAGACAGTATTAAGAGCTAAATTGGCTAAGGGTATCGGTCATCATTATTACGGAGAACCCGCATGGCCTAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGATTTAGCAGTTATAGGACCATCAATGATTGGTGAACCCGCAGATCCATGTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCCTATTTCAAATCCTTCGTACAGTGCCAAATAAGAATATAAGTTATTGGGTCTTCTTTTAAGGGTTTCCGTGCCAAATAAGTTATTAGGTCTTCTTTAATGGTTTCCGTACCGGCGACATTCTTAACTGTACCCTTTTGGGAGAATGTCTAATATATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCTTTTGATTGGTACCGCAGTAGCCCTTTGGTTGGTGGAGCAAGATTATCGATTGAGAAATCCCTAACTTGAGGTCTTTTTGAAATTGATTCAATTGTGGTTCAATCTAAATCTATTGCTATTGCTTTTTCCTTAGTTTAGCCAATTTCTCATTCAAAGTAAACAAGGGGTAAGGCAGGGGTAAAGTCACTTTCTGTTTATTGTTTTGAAAATGGAAGTTTTCTTCTTCCGTTTCTGCATGTAAAAAAGGAATAAATAAATCAATCAAATTACGAGAGGCTGAATTCAGTGCTTCTTTAGGAGTGAAACTTTCCCATTGGTTCATATTTCGATCAAAATTCTCTCTTCTTTTTCATTCCCACCGTAGATTGAGTTCTGGGAGGAATTACAGCTCATCATTTTTGTTCACCAGAGAAAGAAGGCTCTGACATTCTGGCTTCGCTTCTTCTTGAGCCCAGACGCCAACGCAGGCGAGGTGTGAACTTCAAGAAAATCAAATGACGACTACTTTTGCACCTCCTGATCCTCAAACAAAGGAAAGGAGACCAATCTCTTTCTTGTGAGACTTTGTAATCCATAGGACCTACTCCAAAATCTCTTATCCGCGATTCCTCTCGGTTACCCCCGCTCGGACAGCCCCGAGGAAGTGAGGAATATCTTGGCATAATTGTCTGCTAATTCAGGTCTTGTTCCAGCTCCTTCGCCCTACGGGTCTCACAGCTTTTGCTCCTTCGCCCCAACAAAGTAAATCCACGCTCAATTGGAATCCTTTTCATTTTGCTTATCTTGAATCATTGATGAGAAGGAAGACTGGAATGCCAACACAGGAAATGCCTAAGCCTTTTTCCTCAGCAGGAGAAAATTCATACCGGTGTCATAGAGTTACTCCCATGGCCGGAATGAAAACCGACTCGAAGTAGGGAAAGGAAGAAGCAGCGAGGAAGTAGAGAAAGGTGCGAAACAAGCAGCGAGACTGTAAGGGCAAAGGAACGAATAGAATATACTTTACCCAGTTCAAGAAGTCCAATGCAGGGTGGTACTCTCACAGCTGATCTTTCTTGACTTTTATGCATTTACAGGATTGAATATGAATTGACTCAACTCTTTTTGTTCAGGTAAAGGAAGAAGACGAGTTGGAGAGGTTAAAGCAATGGAATAGAATATGCTTTACCCAGTGA

mRNA sequence

ATGGTCGGCAAGATGGTCTTAATGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCGGTTATTGGGCAGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTCTTCAAGTACATAGGGTCTTGCTAGAGTTATTACGTGGAAGTGCTAGTGGGGGACAATCTACCTTGACTCGTTTTTCTAGTTTACACATTTTGACCTCTTCTTACTGCCTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTACTATTGCATGTAACGTGGATTTAGCAGTTATAGGACCATCAATGATTGGTGAACCCGCAGATCCATGTGCAACTCCTTTGGAAATATTGCCGGAATGGTCTTCTTTAATGGTTTCCGTACCGGCGACATTCTTAACTGTACCCTTTTGGGAGAATATTGAGTTCTGGGAGGAATTACAGCTCATCATTTTTGTTCACCAGAGAAAGAAGGCTCTGACATTCTGGCTTCGCTTCTTCTTGAGCCCAGACGCCAACGCAGGCGAGGTAAAGGAAGAAGACGAGTTGGAGAGGTTAAAGCAATGGAATAGAATATGCTTTACCCAGTGA

Coding sequence (CDS)

ATGGTCGGCAAGATGGTCTTAATGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCGGTTATTGGGCAGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTCTTCAAGTACATAGGGTCTTGCTAGAGTTATTACGTGGAAGTGCTAGTGGGGGACAATCTACCTTGACTCGTTTTTCTAGTTTACACATTTTGACCTCTTCTTACTGCCTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTACTATTGCATGTAACGTGGATTTAGCAGTTATAGGACCATCAATGATTGGTGAACCCGCAGATCCATGTGCAACTCCTTTGGAAATATTGCCGGAATGGTCTTCTTTAATGGTTTCCGTACCGGCGACATTCTTAACTGTACCCTTTTGGGAGAATATTGAGTTCTGGGAGGAATTACAGCTCATCATTTTTGTTCACCAGAGAAAGAAGGCTCTGACATTCTGGCTTCGCTTCTTCTTGAGCCCAGACGCCAACGCAGGCGAGGTAAAGGAAGAAGACGAGTTGGAGAGGTTAAAGCAATGGAATAGAATATGCTTTACCCAGTGA
Homology
[Close]
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match: PETD_PANGI (Cytochrome b6-f complex subunit 4 OS=Panax ginseng GN=petD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match: PETD_GOSBA (Cytochrome b6-f complex subunit 4 OS=Gossypium barbadense GN=petD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVFLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match: PETD_CUCSA (Cytochrome b6-f complex subunit 4 OS=Cucumis sativus GN=petD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match: PETD_SOLLC (Cytochrome b6-f complex subunit 4 OS=Solanum lycopersicum GN=petD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match: PETD_NICSY (Cytochrome b6-f complex subunit 4 OS=Nicotiana sylvestris GN=petD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. TrEMBL
Match: G7JQB0_MEDTR (Cytochrome B(Amino-terminal)/b6/petB protein OS=Medicago truncatula GN=MTR_4g034790 PE=4 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 6.2e-22
Identity = 77/140 (55.00%), Postives = 86/140 (61.43%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFP 93
           AVKIVTGVP+A+ V    ++ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFP
Sbjct: 75  AVKIVTGVPDAIPVIGSSVVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVF--MLMHFP 134

Query: 94  MIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------ 150
           MIR             LAV+ PSMIGEPADP ATPLEILPEW                  
Sbjct: 135 MIR-------------LAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLG 194

[Close]
BLAST of CmoCh11G012310 vs. TrEMBL
Match: A0A151R2C1_CAJCA (Cytochrome b6 OS=Cajanus cajan GN=KK1_042080 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 82/166 (49.40%), Postives = 93/166 (56.02%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSY-------- 93
           AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +        
Sbjct: 94  AVKIVTGVPEAIPVIGSSLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 153

Query: 94  ------------------CLMLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCAT 150
                               +L  FP++    I GTIACNV LAV+ PSMIGEPADP AT
Sbjct: 154 PKLAKGMGHNYYGEPAWPNDLLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFAT 213

[Close]
BLAST of CmoCh11G012310 vs. TrEMBL
Match: T1L7H0_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 72/177 (40.68%), Postives = 83/177 (46.89%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQ--------------------STLTRFSSL 93
           AVKIVTGVP+A+ V    L+ELLRGSAS GQ                      L  F  +
Sbjct: 121 AVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 180

Query: 94  H-------ILTSSYCLMLMH---------------FPMIRKQGISGTIACNVDLAVIGPS 150
                   +L +     + H               FP++    I GTIACNV LAV+ PS
Sbjct: 181 RKQDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVV----ILGTIACNVGLAVLEPS 240

[Close]
BLAST of CmoCh11G012310 vs. TrEMBL
Match: A0A0A7DU48_9MAGN (Cytochrome b6-f complex subunit 4 OS=Thalictrum coreanum GN=petD PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPFWEN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFWENV 117

[Close]
BLAST of CmoCh11G012310 vs. TrEMBL
Match: A0A0K1ZWS8_9ASTR (Cytochrome b6-f complex subunit 4 OS=Goodenia drummondii GN=petD PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 53/109 (48.62%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENIEFWEELQLIIFVHQRKKALTFWL 173
                   LMVSVPA  LTVPF+EN+  ++         +R  A TF+L
Sbjct: 96  PNKFLGVLLMVSVPAGLLTVPFFENVNKFQN------PFRRPVATTFFL 134

[Close]
BLAST of CmoCh11G012310 vs. TAIR10
Match: ATCG00730.1 (ATCG00730.1 photosynthetic electron transfer D)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-15
Identity = 48/86 (55.81%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPF EN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFLENV 117

[Close]
BLAST of CmoCh11G012310 vs. TAIR10
Match: ATCG00720.1 (ATCG00720.1 photosynthetic electron transfer B)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFP 93
           AVKIVTGVP+A+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHF 
Sbjct: 147 AVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVF--MLMHFL 206

Query: 94  MIRKQGISGTI 99
           MIRKQGISG +
Sbjct: 207 MIRKQGISGPL 215

[Close]
BLAST of CmoCh11G012310 vs. NCBI nr
Match: gi|922362640|ref|XP_003605602.2| (cytochrome B(amino-terminal)/b6/petB protein [Medicago truncatula])

HSP 1 Score: 112.5 bits (280), Expect = 9.0e-22
Identity = 77/140 (55.00%), Postives = 86/140 (61.43%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSYCLMLMHFP 93
           AVKIVTGVP+A+ V    ++ELLRGSAS GQSTLTRF SLH     +LT+ +  MLMHFP
Sbjct: 75  AVKIVTGVPDAIPVIGSSVVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVF--MLMHFP 134

Query: 94  MIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------------ 150
           MIR             LAV+ PSMIGEPADP ATPLEILPEW                  
Sbjct: 135 MIR-------------LAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLG 194

[Close]
BLAST of CmoCh11G012310 vs. NCBI nr
Match: gi|1012324784|gb|KYP36741.1| (Cytochrome b6 [Cajanus cajan])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 82/166 (49.40%), Postives = 93/166 (56.02%), Query Frame = 1 

Query: 34  AVKIVTGVPEALQV-HRVLLELLRGSASGGQSTLTRFSSLH-----ILTSSY-------- 93
           AVKIVTGVPEA+ V    L+ELLRGSAS GQSTLTRF SLH     +LT+ +        
Sbjct: 94  AVKIVTGVPEAIPVIGSSLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 153

Query: 94  ------------------CLMLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCAT 150
                               +L  FP++    I GTIACNV LAV+ PSMIGEPADP AT
Sbjct: 154 PKLAKGMGHNYYGEPAWPNDLLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFAT 213

[Close]
BLAST of CmoCh11G012310 vs. NCBI nr
Match: gi|746948502|ref|YP_009114900.1| (cytochrome b6/f complex subunit IV [Thalictrum coreanum])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENI 150
                   LMVSVPA  LTVPFWEN+
Sbjct: 96  PNKLLGVLLMVSVPAGLLTVPFWENV 117

[Close]
BLAST of CmoCh11G012310 vs. NCBI nr
Match: gi|917545252|gb|AKZ30597.1| (cytochrome b6/f complex subunit IV (chloroplast) [Goodenia drummondii])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 53/109 (48.62%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENIEFWEELQLIIFVHQRKKALTFWL 173
                   LMVSVPA  LTVPF+EN+  ++         +R  A TF+L
Sbjct: 96  PNKFLGVLLMVSVPAGLLTVPFFENVNKFQN------PFRRPVATTFFL 134

[Close]
BLAST of CmoCh11G012310 vs. NCBI nr
Match: gi|917546184|gb|AKZ31515.1| (cytochrome b6/f complex subunit IV (chloroplast) [Goodenia phillipsiae])

HSP 1 Score: 80.9 bits (198), Expect = 2.9e-12
Identity = 53/109 (48.62%), Postives = 62/109 (56.88%), Query Frame = 1 

Query: 82  MLMHFPMIRKQGISGTIACNVDLAVIGPSMIGEPADPCATPLEILPEW------------ 141
           +L  FP++    I GTIACNV LAV+ PSMIGEPADP ATPLEILPEW            
Sbjct: 36  LLYIFPVV----ILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTV 95

Query: 142 ------SSLMVSVPATFLTVPFWENIEFWEELQLIIFVHQRKKALTFWL 173
                   LMVSVPA  LTVPF EN+  ++         +R  A TF+L
Sbjct: 96  PNKFLGVLLMVSVPAGLLTVPFLENVNQFQN------PFRRPVATTFFL 134

The following BLAST results are available for this feature:
BLAST of CmoCh11G012310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PETD_PANGI5.3e-1455.81Cytochrome b6-f complex subunit 4 OS=Panax ginseng GN=petD PE=3 SV=1[more]
PETD_GOSBA5.3e-1455.81Cytochrome b6-f complex subunit 4 OS=Gossypium barbadense GN=petD PE=3 SV=1[more]
PETD_CUCSA5.3e-1455.81Cytochrome b6-f complex subunit 4 OS=Cucumis sativus GN=petD PE=3 SV=1[more]
PETD_SOLLC5.3e-1455.81Cytochrome b6-f complex subunit 4 OS=Solanum lycopersicum GN=petD PE=3 SV=1[more]
PETD_NICSY5.3e-1455.81Cytochrome b6-f complex subunit 4 OS=Nicotiana sylvestris GN=petD PE=3 SV=1[more]
BLAST of CmoCh11G012310 vs. TrEMBL
Match NameE-valueIdentityDescription
G7JQB0_MEDTR6.2e-2255.00Cytochrome B(Amino-terminal)/b6/petB protein OS=Medicago truncatula GN=MTR_4g034... [more]
A0A151R2C1_CAJCA1.1e-2149.40Cytochrome b6 OS=Cajanus cajan GN=KK1_042080 PE=3 SV=1[more]
T1L7H0_TRIUA1.1e-1340.68Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
A0A0A7DU48_9MAGN1.8e-1356.98Cytochrome b6-f complex subunit 4 OS=Thalictrum coreanum GN=petD PE=3 SV=1[more]
A0A0K1ZWS8_9ASTR9.0e-1348.62Cytochrome b6-f complex subunit 4 OS=Goodenia drummondii GN=petD PE=3 SV=1[more]
BLAST of CmoCh11G012310 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00730.13.0e-1555.81ATCG00730.1 photosynthetic electron transfer D[more]
ATCG00720.11.2e-1366.20ATCG00720.1 photosynthetic electron transfer B[more]
BLAST of CmoCh11G012310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922362640|ref|XP_003605602.2|9.0e-2255.00cytochrome B(amino-terminal)/b6/petB protein [Medicago truncatula][more]
gi|1012324784|gb|KYP36741.1|1.5e-2149.40Cytochrome b6 [Cajanus cajan][more]
gi|746948502|ref|YP_009114900.1|2.6e-1356.98cytochrome b6/f complex subunit IV [Thalictrum coreanum][more]
gi|917545252|gb|AKZ30597.1|1.3e-1248.62cytochrome b6/f complex subunit IV (chloroplast) [Goodenia drummondii][more]
gi|917546184|gb|AKZ31515.1|2.9e-1248.62cytochrome b6/f complex subunit IV (chloroplast) [Goodenia phillipsiae][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR005798Cyt_b/b6_C
IPR016174Di-haem_cyt_TM
IPR027387Cytb/b6-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012310.1CmoCh11G012310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 34..93
score: 8.
IPR005798Cytochrome b/b6, C-terminalunknownSSF81648a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 89..154
score: 7.8
IPR016174Di-haem cytochrome, transmembraneunknownSSF81342Transmembrane di-heme cytochromescoord: 50..106
score: 3.9
IPR027387Cytochrome b/b6-like domainGENE3DG3DSA:1.20.810.10coord: 34..95
score: 6.
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 96..116
score: 3.
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 34..159
score: 6.5
NoneNo IPR availablePANTHERPTHR19271:SF8CYTOCHROME B6coord: 34..159
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012310Cucurbita maxima (Rimu)cmacmoB679
CmoCh11G012310Cucurbita pepo (Zucchini)cmocpeB127
CmoCh11G012310Wax gourdcmowgoB0164