CmoCh11G012260 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L23
LocationCmo_Chr11 : 7431661 .. 7435822 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGGTAAATATTTCTCAGAACATGGAGTGTGAATCAAACCCATGTTTGAATTGAAATTGAGATACTGATGCAAGTTCTTCCCCTCTGAATCAGATAGATTCATATCTGAAAGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTTAGATACCTGTGACTCGATTGGTGAAATAGTATCTCTCTCCAAAAAAGCATGTTTTTTTTTACCGCCGCACAAAGAAAATATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATACGTAAAATCATAATTATTGATACGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATAGATGTGGATCTCGGACCTATGAATGGGGATATTCCCGAAACTCACAAAGAAAAAAGGAAGTGAGTTAGACAAAAAGAGAAGAAACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTTTTTATCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGAGCGAACACTACTTGAAAATGAAAATGGCTCTTCTGCTCAGAAATGAAATGTTCCTGGAAATTCTTGCTCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGATCGAACCATTTCTTCTGACCCTTTTTCAAATTTGATAAATGTTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTGTTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTTGTTTTGGATCTTCCAAATCATTCCCGGGGGAGGTCCGGACCCATTTTTTTTCTGATCCTTCGATAAAAAGATTCATTCTCTTTATAAAAAATAGGAGGTAGAATCAATAAATATTTCTTTTTCGATTCATCCCTGGAGTTGAATACCTCATTCAAGAATTGTTTTTGATCCAATCCGTAGGAATCAATAGAAAAGGAAAATCCCTTATGATACACCAGATCCGACTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATTCAAAATCGTGGTGTAACGTGTATCCCCTCCTGTTCCGGTCATGGAATAGATGAAATAAATAAATAAATGGATTTTTGTTCAAGAATGAAATCTTATTGGAACTGTCCATATCCAGTTCATCCTTCGGAACCATATCACATCCCGGATCTGATGAAATAGGATGAATTGAGACGGTATTTTATAAATACGCAATTATCTTGAATATATTAACTATTTCTTTATTTTCCGATTGCCTGGAAGGGACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCTCAATAGGATTCGAACCCATATGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGGATGATTATTCATCNTGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTTGATTTCTTCCGGAAGCGGATGATTATTCATCTGCTTCTCACGTTTCGTGAATAGCCGGGACATTGAGGAATATCCAGAAAAGCATTTAGGGAATCGGTCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTAGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCTGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATTAGAAGATCCTTTCAATTGGCTAGAATCTGTTACTTGAACGAAACTAGATCTTGTGGAATCATATTGAATATTTGACAAGACATTCCGTACCTTGCTAAAAAACTGATCCTTGTTTACCAACCACACATTGTCTAACCAAATCCAATTCTCTCTCGATATGTTCCTCAAAAAATCCGATTCGTGCGGATTCTTCCCCCAACTAAAGAAGAGATCTTGGCGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAATAGTTGACCTAGCTCCTTGTTGTTTGAAGAAGCCCTCCACTTCAATTGGTATTTTTTCACGAAAAGCAAACATGAGATAACAAATCCAGTCTTTCACTAAGATTTCGAATAGCTGTCCCGAATTCAAGTTGATTATGTTTTGCCTCTTCCTCGGAGAAAGACGATCAAACAATTCCCAATCATGGTCCTTGCGGATCTGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTTTCTCTTTGAATGAGATCTCAATTCCAGCGACGGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAAAGATCTTTTTTCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGGTTCTTCCAATGTATCATTTCTGAGTCCAATGAAATTCATAGGTATAGGAAGAAATCCTGTCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTAATACGATATATAAGGACCGCTACTACAAATAGTACTACACCCTTGATCGTGAAATATCGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATTCGAAAATCCAGGATTTGAATTGATGGCCGTTCATTAATTAAGTCCTCCTAAATTGCATTGATTTATACTAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

mRNA sequence

ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

Coding sequence (CDS)

ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG
Homology
[Close]
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match: RK23_SINAL (50S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match: RK23_ARATH (50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match: RK23_COFAR (50S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.3e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match: RK23_CITSI (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILF--HLLERKEL 239
           MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI    H L RK  
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGR 60

Query: 240 KSKYLIAWRYIYTKLL 254
           +   ++A    Y +++
Sbjct: 61  RMGPIMAHTMHYRRMI 76

[Close]
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match: RK23_EUCGG (50S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV 227
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV 47

[Close]
BLAST of CmoCh11G012260 vs. TrEMBL
Match: J7F224_ORYSI (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. indica GN=rpl23 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 65/117 (55.56%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV------------- 239
           MDGIKYAVFT+KS RLLGKNQYTFNVESG T+TEIKHWVELFFGVKV             
Sbjct: 1   MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGR 60

Query: 240 ----ILFH------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
               IL H                  LL+R++ K +YLI  R IYTK L RAHA EP
Sbjct: 61  RMGPILGHTMHYRRMIITLQPGYSIPLLDREKTKGEYLIIRRNIYTKHLSRAHAREP 117

[Close]
BLAST of CmoCh11G012260 vs. TrEMBL
Match: S4Z105_HORVS (50S ribosomal protein L23, chloroplastic OS=Hordeum vulgare subsp. spontaneum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 65/117 (55.56%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV------------- 239
           MDGIKYAVFT+KS RLLGKNQYTFNVESG T+TEIKHWVELFFGVKV             
Sbjct: 1   MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGR 60

Query: 240 ----ILFH------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
               IL H                  LL+R++ K +YLI  R IYTK L RAHA EP
Sbjct: 61  RIGPILGHTMHYRRMIITLQPGYSIPLLDREKTKGEYLIIRRNIYTKHLSRAHAREP 117

[Close]
BLAST of CmoCh11G012260 vs. TrEMBL
Match: S4Z1A8_HORVD (50S ribosomal protein L23, chloroplastic OS=Hordeum vulgare var. distichum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 65/117 (55.56%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV------------- 239
           MDGIKYAVFT+KS RLLGKNQYTFNVESG T+TEIKHWVELFFGVKV             
Sbjct: 1   MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGR 60

Query: 240 ----ILFH------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
               IL H                  LL+R++ K +YLI  R IYTK L RAHA EP
Sbjct: 61  RIGPILGHTMHYRRMIITLQPGYSIPLLDREKTKGEYLIIRRNIYTKHLSRAHAREP 117

[Close]
BLAST of CmoCh11G012260 vs. TrEMBL
Match: A0A0S2IEL1_9ROSI (Ribosomal protein L23 OS=Cucurbita digitata GN=rpl23 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. TrEMBL
Match: A0A0S2IEC6_9ROSI (Ribosomal protein L23 OS=Cucurbita cordata GN=rpl23 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. TAIR10
Match: ATCG00840.1 (ATCG00840.1 ribosomal protein L23.1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. TAIR10
Match: ATCG01300.1 (ATCG01300.1 ribosomal protein L23)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. NCBI nr
Match: gi|353685096|gb|AER12861.1| (ribosomal protein L23 (chloroplast) [Oryza sativa Indica Group])

HSP 1 Score: 109.4 bits (272), Expect = 9.7e-21
Identity = 65/117 (55.56%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV------------- 239
           MDGIKYAVFT+KS RLLGKNQYTFNVESG T+TEIKHWVELFFGVKV             
Sbjct: 1   MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGR 60

Query: 240 ----ILFH------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
               IL H                  LL+R++ K +YLI  R IYTK L RAHA EP
Sbjct: 61  RMGPILGHTMHYRRMIITLQPGYSIPLLDREKTKGEYLIIRRNIYTKHLSRAHAREP 117

[Close]
BLAST of CmoCh11G012260 vs. NCBI nr
Match: gi|521300993|gb|AGP50796.1| (ribosomal protein L23 (chloroplast) [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 109.4 bits (272), Expect = 9.7e-21
Identity = 65/117 (55.56%), Postives = 71/117 (60.68%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV------------- 239
           MDGIKYAVFT+KS RLLGKNQYTFNVESG T+TEIKHWVELFFGVKV             
Sbjct: 1   MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGR 60

Query: 240 ----ILFH------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
               IL H                  LL+R++ K +YLI  R IYTK L RAHA EP
Sbjct: 61  RIGPILGHTMHYRRMIITLQPGYSIPLLDREKTKGEYLIIRRNIYTKHLSRAHAREP 117

[Close]
BLAST of CmoCh11G012260 vs. NCBI nr
Match: gi|952954589|gb|ALO21950.1| (ribosomal protein L23 (plastid) [Cucurbita cordata])

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. NCBI nr
Match: gi|984913427|gb|AMC32143.1| (ribosomal protein L23 (chloroplast) [Chorispora tenella])

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILF--HLLERKEL 239
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI    H L  K  
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 240 KSKYLIAWRYIYTKLL 254
           +   L+  +  Y +++
Sbjct: 61  RKGLLLGLQKRYRRMI 76

[Close]
BLAST of CmoCh11G012260 vs. NCBI nr
Match: gi|297841017|ref|XP_002888390.1| (ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

The following BLAST results are available for this feature:
BLAST of CmoCh11G012260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK23_SINAL6.3e-2097.9250S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1[more]
RK23_ARATH6.3e-2097.9250S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3... [more]
RK23_COFAR6.3e-2097.9250S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1[more]
RK23_CITSI1.1e-1968.4250S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1[more]
RK23_EUCGG1.8e-1997.8750S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus ... [more]
BLAST of CmoCh11G012260 vs. TrEMBL
Match NameE-valueIdentityDescription
J7F224_ORYSI6.8e-2155.5650S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. indica GN=rpl23 ... [more]
S4Z105_HORVS6.8e-2155.5650S ribosomal protein L23, chloroplastic OS=Hordeum vulgare subsp. spontaneum GN... [more]
S4Z1A8_HORVD6.8e-2155.5650S ribosomal protein L23, chloroplastic OS=Hordeum vulgare var. distichum GN=rp... [more]
A0A0S2IEL1_9ROSI1.4e-18100.00Ribosomal protein L23 OS=Cucurbita digitata GN=rpl23 PE=3 SV=1[more]
A0A0S2IEC6_9ROSI1.4e-18100.00Ribosomal protein L23 OS=Cucurbita cordata GN=rpl23 PE=3 SV=1[more]
BLAST of CmoCh11G012260 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00840.13.5e-2197.92ATCG00840.1 ribosomal protein L23.1[more]
ATCG01300.13.5e-2197.92ATCG01300.1 ribosomal protein L23[more]
BLAST of CmoCh11G012260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|353685096|gb|AER12861.1|9.7e-2155.56ribosomal protein L23 (chloroplast) [Oryza sativa Indica Group][more]
gi|521300993|gb|AGP50796.1|9.7e-2155.56ribosomal protein L23 (chloroplast) [Hordeum vulgare subsp. vulgare][more]
gi|952954589|gb|ALO21950.1|2.0e-18100.00ribosomal protein L23 (plastid) [Cucurbita cordata][more]
gi|984913427|gb|AMC32143.1|5.9e-1868.42ribosomal protein L23 (chloroplast) [Chorispora tenella][more]
gi|297841017|ref|XP_002888390.1|1.0e-1797.92ribosomal protein L23 [Arabidopsis lyrata subsp. lyrata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR013025Ribosomal_L25/23
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012260.1CmoCh11G012260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 180..236
score: 3.7
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 180..229
score: 7.55
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 183..230
score: 7.0
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 107..227
score: 6.4
NoneNo IPR availablePANTHERPTHR11620:SF11SUBFAMILY NOT NAMEDcoord: 107..227
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012260Cucurbita pepo (Zucchini)cmocpeB127
CmoCh11G012260Wax gourdcmowgoB0164
CmoCh11G012260Cucurbita maxima (Rimu)cmacmoB679