CmoCh11G012250 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L2, chloroplastic
LocationCmo_Chr11 : 7430132 .. 7431622 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTAAATATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCATAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCGGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGTGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCGGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGGACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA
Homology
[Close]
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.3e-126
Identity = 234/278 (84.17%), Postives = 239/278 (85.97%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRR EK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGA+IGDTIVSGTEVPIKMGNALPLSA                  
Sbjct: 91  LIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSA------------------ 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 276

[Close]
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.1e-124
Identity = 229/276 (82.97%), Postives = 236/276 (85.51%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+H CGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+I GRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPI MGNALPLSA                  
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSA------------------ 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPS
Sbjct: 151 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRR 296
           +PIGRKKP TPWGYPALGRRSRKRNKYSD+ ILRRR
Sbjct: 271 SPIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 274

[Close]
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 6.5e-122
Identity = 227/278 (81.65%), Postives = 234/278 (84.17%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRN+KNI GRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNKKNIEGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGD+IVSGTEV IKMGNAL L                    
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDSIVSGTEVSIKMGNALRLG------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 ---------NALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSAT GQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATFGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRK P TPWGYPALGRRSRKRNKYSD+ ILRRR+K
Sbjct: 271 APIGRKNPTTPWGYPALGRRSRKRNKYSDSLILRRRTK 280

[Close]
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 5.9e-115
Identity = 217/276 (78.62%), Postives = 227/276 (82.25%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+I GRIVTIEYDPNRNAYIC
Sbjct: 31  ISGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI          G  +P+S  ++               
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTI--------VSGTEVPISMGNALP------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                        STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPS
Sbjct: 151 ------------LSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNC ATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRR 296
           APIGRKKP TPWGYPALGRRSRKR KYSD+FILRRR
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRKKYSDSFILRRR 273

[Close]
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.7e-114
Identity = 216/276 (78.26%), Postives = 226/276 (81.88%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+H CGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+  GRIVTIEYDPNRNAYIC
Sbjct: 30  IHGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYIC 89

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI          G  +P+S  ++               
Sbjct: 90  LIHYGDGEKRYILHPRGAIIGDTI--------VSGTEVPISMGNALP------------- 149

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                        STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPS
Sbjct: 150 ------------LSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPS 209

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 210 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 269

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRR 296
           APIGRKKP TPWGYPALGRRSRKRNKYSD+ ILRRR
Sbjct: 270 APIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272

[Close]
BLAST of CmoCh11G012250 vs. TrEMBL
Match: A0A0N9YKK9_9ROSA (50S ribosomal protein L2, chloroplastic OS=Ficus racemosa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 3.1e-147
Identity = 266/279 (95.34%), Postives = 272/279 (97.49%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYG+IVTIEYDPNRNAYIC
Sbjct: 37  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYIC 96

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSA-ISSSTSRKPYALEEACT 139
           LIHYG GEKRYILH RGA+IGDTIVSGTEVPIKMGNALPLSA ISSSTSRKPYALEEACT
Sbjct: 97  LIHYGGGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSAVISSSTSRKPYALEEACT 156

Query: 140 VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 199
           VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP
Sbjct: 157 VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 216

Query: 200 SGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 259
           SGEVRLI KNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG
Sbjct: 217 SGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 276

Query: 260 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           RAPIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 277 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 315

[Close]
BLAST of CmoCh11G012250 vs. TrEMBL
Match: T1WMD4_BERBE (50S ribosomal protein L2, chloroplastic OS=Berberis bealei GN=rpl2 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 3.1e-139
Identity = 256/278 (92.09%), Postives = 263/278 (94.60%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+ RCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK+I GRIVTIEYDPNRNA IC
Sbjct: 34  IYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNANIC 93

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHY DGEKRYILH RGAIIGDTIVSGTEVPI MGNALPLS ISS TS KPYALEEACTV
Sbjct: 94  LIHYRDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS-ISSYTSGKPYALEEACTV 153

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 154 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 213

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 214 GEVRLISKNCSATVGQVGNLGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 273

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRR+RK+ KYSD+ ILRRRSK
Sbjct: 274 APIGRKKPTTPWGYPALGRRNRKKKKYSDSLILRRRSK 310

[Close]
BLAST of CmoCh11G012250 vs. TrEMBL
Match: A0A0D3RWJ5_9LAMI (Ribosomal protein L2 OS=Ruellia breedlovei GN=rpl2 PE=3 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 2.1e-135
Identity = 247/278 (88.85%), Postives = 255/278 (91.73%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRNE++IYGRIVTIEYDPNRNA IC
Sbjct: 31  IYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEQDIYGRIVTIEYDPNRNACIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGA+IGDTIVSGTEVPIKMGNALPLS            LEEACTV
Sbjct: 91  LIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSRNHHLHPESRMLLEEACTV 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEG+SATLKLPS
Sbjct: 151 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGESATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN G NQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSDN I+RRRSK
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLIVRRRSK 308

[Close]
BLAST of CmoCh11G012250 vs. TrEMBL
Match: A0A0N9Q032_POPCN (50S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 7.5e-133
Identity = 247/278 (88.85%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI+SGTEVPIKMGNALPLS                   
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLS------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
            E VLIDQKEESTSTDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 -EEVLIDQKEESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 288

[Close]
BLAST of CmoCh11G012250 vs. TrEMBL
Match: A0A0D4WNR1_POPTN (50S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 7.5e-133
Identity = 247/278 (88.85%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI+SGTEVPIKMGNALPLS                   
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLS------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
            E VLIDQKEESTSTDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 -EEVLIDQKEESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 288

[Close]
BLAST of CmoCh11G012250 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-111
Identity = 210/276 (76.09%), Postives = 222/276 (80.43%), Query Frame = 1 

Query: 22  GEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLI 81
           G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRN K+IYGRIVTIEYDPNRNAYICLI
Sbjct: 33  GQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLI 92

Query: 82  HYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWE 141
           HYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL+ +   T+              
Sbjct: 93  HYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTA-------------- 152

Query: 142 GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 201
                      + ++ LG              QLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 153 ---------IHNIEITLGRGG-----------QLARAAGAVAKLIAKEGKSATLKLPSGE 212

Query: 202 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 261
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 213 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 272

Query: 262 IGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           IGRKKP TPWGYPALGRR+RKR KYS+  ILRRRSK
Sbjct: 273 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of CmoCh11G012250 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-111
Identity = 210/276 (76.09%), Postives = 222/276 (80.43%), Query Frame = 1 

Query: 22  GEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLI 81
           G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRN K+IYGRIVTIEYDPNRNAYICLI
Sbjct: 33  GQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLI 92

Query: 82  HYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWE 141
           HYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL+ +   T+              
Sbjct: 93  HYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTA-------------- 152

Query: 142 GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 201
                      + ++ LG              QLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 153 ---------IHNIEITLGRGG-----------QLARAAGAVAKLIAKEGKSATLKLPSGE 212

Query: 202 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 261
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 213 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 272

Query: 262 IGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           IGRKKP TPWGYPALGRR+RKR KYS+  ILRRRSK
Sbjct: 273 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of CmoCh11G012250 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 115.2 bits (287), Expect = 7.1e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1 

Query: 156 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 215
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 216 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 275
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 276 GYPALG 278
           G P  G
Sbjct: 188 GKPCKG 193

[Close]
BLAST of CmoCh11G012250 vs. TAIR10
Match: AT3G51190.1 (AT3G51190.1 Ribosomal protein L2 family)

HSP 1 Score: 82.0 bits (201), Expect = 6.7e-16
Identity = 59/145 (40.69%), Postives = 76/145 (52.41%), Query Frame = 1 

Query: 156 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 215
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 216 GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 275
           GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G A
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGHA 227

Query: 276 PIGR--KKPATPWGYPALGRRSRKR 284
              R  K      G  A  R  R+R
Sbjct: 228 STVRRDKSAGAKVGQIAARRTGRRR 248

[Close]
BLAST of CmoCh11G012250 vs. TAIR10
Match: AT4G36130.1 (AT4G36130.1 Ribosomal protein L2 family)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-13
Identity = 75/263 (28.52%), Postives = 110/263 (41.83%), Query Frame = 1 

Query: 40  HRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHSRGAII 99
           HR G  K  +R ++F      + G +  I +DP R A +  + +    +           
Sbjct: 22  HRKGPAK--FRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFR----------- 81

Query: 100 GDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLG 159
                       K    L ++A    T +  Y  ++A  V   VL           +P G
Sbjct: 82  -----------FKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVL-------PLRSIPEG 141

Query: 160 TAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATVGQVG 219
             I N+E  +G  G  ARA+G  A +IA   +  ++ +KLPSG  +++   C A +GQV 
Sbjct: 142 AVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVA 201

Query: 220 NAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRAPIGR 279
             G  +K + +AG+          CW    P VRGV MNPV+HPHGGG     G A   R
Sbjct: 202 GGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVR 249

Query: 280 K--KPATPWGYPALGRRSRKRNK 286
           +   P    G  A  R  R R +
Sbjct: 262 RDAPPGKKVGLIAARRTGRLRGQ 249

[Close]
BLAST of CmoCh11G012250 vs. NCBI nr
Match: gi|944542124|ref|YP_009176044.1| (ribosomal protein L2 (chloroplast) [Ficus racemosa])

HSP 1 Score: 529.3 bits (1362), Expect = 4.5e-147
Identity = 266/279 (95.34%), Postives = 272/279 (97.49%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYG+IVTIEYDPNRNAYIC
Sbjct: 37  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYIC 96

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSA-ISSSTSRKPYALEEACT 139
           LIHYG GEKRYILH RGA+IGDTIVSGTEVPIKMGNALPLSA ISSSTSRKPYALEEACT
Sbjct: 97  LIHYGGGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSAVISSSTSRKPYALEEACT 156

Query: 140 VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 199
           VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP
Sbjct: 157 VWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 216

Query: 200 SGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 259
           SGEVRLI KNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG
Sbjct: 217 SGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG 276

Query: 260 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           RAPIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 277 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 315

[Close]
BLAST of CmoCh11G012250 vs. NCBI nr
Match: gi|552546157|ref|YP_008592707.1| (ribosomal protein L2 (chloroplast) [Berberis bealei])

HSP 1 Score: 502.7 bits (1293), Expect = 4.5e-139
Identity = 256/278 (92.09%), Postives = 263/278 (94.60%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+ RCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK+I GRIVTIEYDPNRNA IC
Sbjct: 34  IYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNANIC 93

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHY DGEKRYILH RGAIIGDTIVSGTEVPI MGNALPLS ISS TS KPYALEEACTV
Sbjct: 94  LIHYRDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS-ISSYTSGKPYALEEACTV 153

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 154 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 213

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 214 GEVRLISKNCSATVGQVGNLGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 273

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRR+RK+ KYSD+ ILRRRSK
Sbjct: 274 APIGRKKPTTPWGYPALGRRNRKKKKYSDSLILRRRSK 310

[Close]
BLAST of CmoCh11G012250 vs. NCBI nr
Match: gi|766544210|gb|AJS14460.1| (ribosomal protein L2 [Ruellia breedlovei])

HSP 1 Score: 490.0 bits (1260), Expect = 3.0e-135
Identity = 247/278 (88.85%), Postives = 255/278 (91.73%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRNE++IYGRIVTIEYDPNRNA IC
Sbjct: 31  IYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEQDIYGRIVTIEYDPNRNACIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGA+IGDTIVSGTEVPIKMGNALPLS            LEEACTV
Sbjct: 91  LIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSRNHHLHPESRMLLEEACTV 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEG+SATLKLPS
Sbjct: 151 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGESATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN G NQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSDN I+RRRSK
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLIVRRRSK 308

[Close]
BLAST of CmoCh11G012250 vs. NCBI nr
Match: gi|959125538|ref|YP_009186073.1| (ribosomal protein L2 (chloroplast) [Gynochthodes nanlingensis])

HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132
Identity = 247/278 (88.85%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAI+GDTIVSGTEVPIKMGNALPLS                   
Sbjct: 91  LIHYGDGEKRYILHPRGAILGDTIVSGTEVPIKMGNALPLS------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
             GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 --GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]
BLAST of CmoCh11G012250 vs. NCBI nr
Match: gi|849123898|ref|YP_009154451.1| (ribosomal protein L2 (chloroplast) [Populus tremula])

HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132
Identity = 247/278 (88.85%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI+SGTEVPIKMGNALPLS                   
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLS------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
            E VLIDQKEESTSTDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 -EEVLIDQKEESTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 288

The following BLAST results are available for this feature:
BLAST of CmoCh11G012250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2B_COFAR3.3e-12684.1750S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1[more]
RK2A_CHLSC4.1e-12482.9750S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3... [more]
RK2_PLAOC6.5e-12281.6550S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 ... [more]
RK2_DIOEL5.9e-11578.6250S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3... [more]
RK2A_LIRTU1.7e-11478.2650S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A P... [more]
BLAST of CmoCh11G012250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0N9YKK9_9ROSA3.1e-14795.3450S ribosomal protein L2, chloroplastic OS=Ficus racemosa GN=rpl2 PE=3 SV=1[more]
T1WMD4_BERBE3.1e-13992.0950S ribosomal protein L2, chloroplastic OS=Berberis bealei GN=rpl2 PE=3 SV=1[more]
A0A0D3RWJ5_9LAMI2.1e-13588.85Ribosomal protein L2 OS=Ruellia breedlovei GN=rpl2 PE=3 SV=1[more]
A0A0N9Q032_POPCN7.5e-13388.8550S ribosomal protein L2, chloroplastic OS=Populus canescens GN=rpl2 PE=3 SV=1[more]
A0A0D4WNR1_POPTN7.5e-13388.8550S ribosomal protein L2, chloroplastic OS=Populus tremula GN=rpl2 PE=3 SV=1[more]
BLAST of CmoCh11G012250 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.14.2e-11176.09ATCG00830.1 ribosomal protein L2[more]
ATCG01310.14.2e-11176.09ATCG01310.1 ribosomal protein L2[more]
AT2G44065.17.1e-2648.41 Ribosomal protein L2 family[more]
AT3G51190.16.7e-1640.69 Ribosomal protein L2 family[more]
AT4G36130.15.3e-1328.52 Ribosomal protein L2 family[more]
BLAST of CmoCh11G012250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944542124|ref|YP_009176044.1|4.5e-14795.34ribosomal protein L2 (chloroplast) [Ficus racemosa][more]
gi|552546157|ref|YP_008592707.1|4.5e-13992.09ribosomal protein L2 (chloroplast) [Berberis bealei][more]
gi|766544210|gb|AJS14460.1|3.0e-13588.85ribosomal protein L2 [Ruellia breedlovei][more]
gi|959125538|ref|YP_009186073.1|1.1e-13288.85ribosomal protein L2 (chloroplast) [Gynochthodes nanlingensis][more]
gi|849123898|ref|YP_009154451.1|1.1e-13288.85ribosomal protein L2 (chloroplast) [Populus tremula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002171Ribosomal_L2
IPR005880Ribosomal_L2_bac/org-type
IPR008991Translation_prot_SH3-like_sf
IPR012340NA-bd_OB-fold
IPR014722Rib_L2_dom2
IPR014726Ribosomal_L2_dom3
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR022669Ribosomal_L2_C
IPR022671Ribosomal_L2_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012250.1CmoCh11G012250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 20..119
score: 9.2E-175coord: 154..297
score: 9.2E
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 29..105
score: 6.3
IPR005880Ribosomal protein L2, bacterial/organellar-typeHAMAPMF_01320_BRibosomal_L2_Bcoord: 2..296
score: 39
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMsTIGR01171TIGR01171coord: 154..296
score: 5.3
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 155..294
score: 2.59
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 20..101
score: 7.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 24..112
score: 2.33
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 155..216
score: 7.0E-31coord: 105..120
score: 7.0
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 217..295
score: 1.4
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 29..105
score: 3.0
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 155..272
score: 4.8
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 111..274
score: 5.7
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 239..250
scor
NoneNo IPR availablePANTHERPTHR13691:SF1950S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 154..297
score: 9.2E-175coord: 20..119
score: 9.2E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012250Wax gourdcmowgoB0164
CmoCh11G012250Cucurbita maxima (Rimu)cmacmoB679
CmoCh11G012250Cucurbita pepo (Zucchini)cmocpeB127